Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AFF1	4299	hgsc.bcm.edu	37	4	88053496	88053496	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AKAP13	11214	hgsc.bcm.edu	37	15	86198698	86198698	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
B4GALT6	9331	hgsc.bcm.edu	37	18	29218625	29218625	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BRDT	676	hgsc.bcm.edu	37	1	92442700	92442700	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BRE	9577	hgsc.bcm.edu	37	2	28117424	28117424	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC87	55231	hgsc.bcm.edu	37	11	66359725	66359725	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COG4	25839	hgsc.bcm.edu	37	16	70546246	70546246	+	Nonsense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CUL3	8452	hgsc.bcm.edu	37	2	225379414	225379414	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNAH11	8701	hgsc.bcm.edu	37	7	21742417	21742417	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EPHA1	2041	hgsc.bcm.edu	37	7	143090819	143090819	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FRRS1	391059	hgsc.bcm.edu	37	1	100214290	100214290	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HEATR5A	25938	hgsc.bcm.edu	37	14	31819067	31819067	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ITPR1	3708	hgsc.bcm.edu	37	3	4730230	4730230	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIF2C	11004	hgsc.bcm.edu	37	1	45205617	45205617	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KLK13	26085	hgsc.bcm.edu	37	19	51561875	51561875	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LAIR2	3904	hgsc.bcm.edu	37	19	55020248	55020248	+	Missense_Mutation	SNP	G	G	C	rs12949	unknown	TCGA-CJ-4876-01	TCGA-CJ-4876-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LMNB1	4001	hgsc.bcm.edu	37	5	126154654	126154654	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRRK2	120892	hgsc.bcm.edu	37	12	40714842	40714844	+	In_Frame_Del	DEL	TGA	TGA	-	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	TGA	TGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MKS1	54903	hgsc.bcm.edu	37	17	56283700	56283700	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RAI14	26064	hgsc.bcm.edu	37	5	34824236	34824236	+	Silent	SNP	G	G	C	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RUNX2	860	hgsc.bcm.edu	37	6	45514873	45514873	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SMARCC1	6599	hgsc.bcm.edu	37	3	47712153	47712153	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SOHLH2	54937	hgsc.bcm.edu	37	13	36748941	36748941	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SSC5D	284297	hgsc.bcm.edu	37	19	56029914	56029916	+	In_Frame_Del	DEL	CCA	CCA	-	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	CCA	CCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ST6GALNAC2	10610	hgsc.bcm.edu	37	17	74562266	74562266	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TBCB	1155	hgsc.bcm.edu	37	19	36611673	36611673	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TECPR1	25851	hgsc.bcm.edu	37	7	97870246	97870246	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMEM186	25880	hgsc.bcm.edu	37	16	8889990	8889990	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRAF3	7187	hgsc.bcm.edu	37	14	103357741	103357741	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZDHHC1	29800	hgsc.bcm.edu	37	16	67428940	67428940	+	Nonsense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4876-01	TCGA-CJ-4876-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
