Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABRA	137735	hgsc.bcm.edu	37	8	107773283	107773283	+	Silent	SNP	C	C	G	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ADAMTS20	80070	hgsc.bcm.edu	37	12	43825222	43825222	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AKAP4	8852	hgsc.bcm.edu	37	X	49963344	49963344	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AKAP8L	26993	hgsc.bcm.edu	37	19	15511799	15511799	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BPTF	2186	hgsc.bcm.edu	37	17	65942187	65942187	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C1orf55	163859	hgsc.bcm.edu	37	1	226180618	226180618	+	Silent	SNP	T	T	C	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CAMKK2	10645	hgsc.bcm.edu	37	12	121698132	121698132	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDK5RAP3	80279	hgsc.bcm.edu	37	17	46051372	46051372	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DENND4C	55667	hgsc.bcm.edu	37	9	19331996	19331996	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ELAVL4	1996	hgsc.bcm.edu	37	1	50666792	50666792	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ERBB3	2065	hgsc.bcm.edu	37	12	56478808	56478808	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM129C	199786	hgsc.bcm.edu	37	19	17664214	17664214	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM75A3	727830	hgsc.bcm.edu	37	9	40704227	40704227	+	Silent	SNP	C	T	T	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM83A	84985	hgsc.bcm.edu	37	8	124195554	124195554	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GALNT2	2590	hgsc.bcm.edu	37	1	230410256	230410256	+	Silent	SNP	G	G	C	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ITGA6	3655	hgsc.bcm.edu	37	2	173356019	173356019	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA0430	9665	hgsc.bcm.edu	37	16	15690639	15690639	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA1632	57724	hgsc.bcm.edu	37	18	43523194	43523194	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MIA3	375056	hgsc.bcm.edu	37	1	222826679	222826679	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NBPF3	84224	hgsc.bcm.edu	37	1	21806704	21806704	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NUF2	83540	hgsc.bcm.edu	37	1	163297295	163297295	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OR7D2	162998	hgsc.bcm.edu	37	19	9296955	9296955	+	Silent	SNP	A	A	G	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OSCAR	126014	hgsc.bcm.edu	37	19	54600307	54600307	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDE6C	5146	hgsc.bcm.edu	37	10	95372619	95372619	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTPRB	5787	hgsc.bcm.edu	37	12	70960250	70960250	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RBBP6	5930	hgsc.bcm.edu	37	16	24581248	24581248	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RPN1	6184	hgsc.bcm.edu	37	3	128356662	128356662	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SCARB1	949	hgsc.bcm.edu	37	12	125279747	125279747	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SENP8	123228	hgsc.bcm.edu	37	15	72432093	72432093	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLU7	10569	hgsc.bcm.edu	37	5	159833540	159833540	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TNFRSF21	27242	hgsc.bcm.edu	37	6	47251933	47251933	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
USP9X	8239	hgsc.bcm.edu	37	X	41077774	41077774	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4881-01	TCGA-CJ-4881-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VHL	7428	hgsc.bcm.edu	37	3	10191495	10191495	+	Missense_Mutation	SNP	T	T	C	rs28940297	unknown	TCGA-CJ-4881-01	TCGA-CJ-4881-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
