Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ARHGAP31	57514	hgsc.bcm.edu	37	3	119133103	119133103	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C13orf18	80183	hgsc.bcm.edu	37	13	46918949	46918949	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C3	718	hgsc.bcm.edu	37	19	6702221	6702221	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C9orf57	138240	hgsc.bcm.edu	37	9	74667326	74667326	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CACNA1E	777	hgsc.bcm.edu	37	1	181453105	181453105	+	Silent	SNP	T	T	C	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CC2D2A	57545	hgsc.bcm.edu	37	4	15538634	15538634	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDH19	28513	hgsc.bcm.edu	37	18	64172226	64172226	+	Silent	SNP	A	A	G	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CLRN2	645104	hgsc.bcm.edu	37	4	17524535	17524535	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COMMD7	149951	hgsc.bcm.edu	37	20	31291229	31291229	+	Silent	SNP	C	C	A	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DIAPH1	1729	hgsc.bcm.edu	37	5	140905613	140905613	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNAH12	201625	hgsc.bcm.edu	37	3	57405106	57405106	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DST	667	hgsc.bcm.edu	37	6	56495059	56495059	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HLA-DQB1	3119	hgsc.bcm.edu	37	6	32629146	32629146	+	Silent	SNP	G	G	A	rs112517017	unknown	TCGA-CJ-4887-01	TCGA-CJ-4887-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ITPKC	80271	hgsc.bcm.edu	37	19	41223765	41223765	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA2022	340533	hgsc.bcm.edu	37	X	73962408	73962408	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LIMCH1	22998	hgsc.bcm.edu	37	4	41664844	41664844	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MRPL18	29074	hgsc.bcm.edu	37	6	160218373	160218373	+	Silent	SNP	T	T	C	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MTOR	2475	hgsc.bcm.edu	37	1	11182158	11182158	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MTOR	2475	hgsc.bcm.edu	37	1	11272938	11272938	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CJ-4887-01	TCGA-CJ-4887-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NPR1	4881	hgsc.bcm.edu	37	1	153658648	153658648	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PARP8	79668	hgsc.bcm.edu	37	5	50093052	50093052	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLOD2	5352	hgsc.bcm.edu	37	3	145804638	145804638	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
POLR3B	55703	hgsc.bcm.edu	37	12	106895189	106895189	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PPFIA1	8500	hgsc.bcm.edu	37	11	70200406	70200406	+	Splice_Site	SNP	G	G	T	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRKCZ	5590	hgsc.bcm.edu	37	1	2077494	2077494	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRODH2	58510	hgsc.bcm.edu	37	19	36303154	36303154	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTGFRN	5738	hgsc.bcm.edu	37	1	117484595	117484595	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RPAP1	26015	hgsc.bcm.edu	37	15	41810335	41810335	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TAF15	8148	hgsc.bcm.edu	37	17	34171885	34171885	+	Silent	SNP	C	C	A	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TNR	7143	hgsc.bcm.edu	37	1	175293500	175293500	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF717	100131827	hgsc.bcm.edu	37	3	75786608	75786608	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4887-01	TCGA-CJ-4887-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF804A	91752	hgsc.bcm.edu	37	2	185802211	185802211	+	Missense_Mutation	SNP	C	C	A	rs5836928	unknown	TCGA-CJ-4887-01	TCGA-CJ-4887-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
