Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ATXN1	6310	hgsc.bcm.edu	37	6	16328275	16328275	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C18orf19	125228	hgsc.bcm.edu	37	18	13681611	13681611	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CARS	833	hgsc.bcm.edu	37	11	3028150	3028150	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CLCN2	1181	hgsc.bcm.edu	37	3	184064478	184064479	+	Frame_Shift_Del	DEL	CT	CT	-	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DEGS1	8560	hgsc.bcm.edu	37	1	224377848	224377848	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM179B	23116	hgsc.bcm.edu	37	14	45433129	45433129	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM188A	80013	hgsc.bcm.edu	37	10	15902225	15902225	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FBXO18	84893	hgsc.bcm.edu	37	10	5963284	5963284	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FCF1	51077	hgsc.bcm.edu	37	14	75200825	75200825	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GTF2E2	2961	hgsc.bcm.edu	37	8	30436496	30436496	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GYS2	2998	hgsc.bcm.edu	37	12	21713365	21713365	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LCT	3938	hgsc.bcm.edu	37	2	136566910	136566910	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LILRA5	353514	hgsc.bcm.edu	37	19	54822747	54822747	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRRC50	123872	hgsc.bcm.edu	37	16	84211399	84211399	+	Silent	SNP	T	T	C	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRRK2	120892	hgsc.bcm.edu	37	12	40692241	40692241	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LYPD1	116372	hgsc.bcm.edu	37	2	133403819	133403819	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC16	94025	hgsc.bcm.edu	37	19	9061085	9061085	+	Silent	SNP	G	G	T	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NRN1	51299	hgsc.bcm.edu	37	6	6002641	6002641	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ODZ1	10178	hgsc.bcm.edu	37	X	123517592	123517592	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PKP4	8502	hgsc.bcm.edu	37	2	159481890	159481890	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PSMD2	5708	hgsc.bcm.edu	37	3	184022099	184022099	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RAD23A	5886	hgsc.bcm.edu	37	19	13058667	13058667	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RP1L1	94137	hgsc.bcm.edu	37	8	10467579	10467581	+	In_Frame_Del	DEL	TTC	TTC	-	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	TTC	TTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC12A5	57468	hgsc.bcm.edu	37	20	44686173	44686173	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMEM64	169200	hgsc.bcm.edu	37	8	91657421	91657421	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
USP54	159195	hgsc.bcm.edu	37	10	75258858	75258858	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZFYVE9	9372	hgsc.bcm.edu	37	1	52704839	52704839	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF33A	7581	hgsc.bcm.edu	37	10	38343536	38343539	+	Frame_Shift_Del	DEL	TATT	TATT	-	novel	.	TCGA-CJ-4895-01	TCGA-CJ-4895-01	TATT	TATT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
