Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AKT1S1	84335	broad.mit.edu	37	19	50374936	50374936	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BBOX1	8424	broad.mit.edu	37	11	27147298	27147299	+	Missense_Mutation	DNP	GC	TA	TA	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	GC	GC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C10orf18	54906	broad.mit.edu	37	10	5789077	5789077	+	Silent	SNP	A	C	C	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C20orf186	149954	broad.mit.edu	37	20	31690805	31690805	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C2orf39	92749	broad.mit.edu	37	2	26677586	26677586	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25583110	25583110	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CEP135	9662	broad.mit.edu	37	4	56825852	56825852	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13056647	13056647	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40033900	40033900	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48609479	48609479	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CR2	1380	broad.mit.edu	37	1	207648341	207648341	+	Silent	SNP	C	T	T	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2818703	2818703	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DTWD2	285605	broad.mit.edu	37	5	118280326	118280326	+	Silent	SNP	A	G	G	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FBLN7	129804	broad.mit.edu	37	2	112896287	112896287	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135485423	135485423	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR137C	283554	broad.mit.edu	37	14	53020188	53020188	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IDS	3423	broad.mit.edu	37	X	148577954	148577954	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IGF2R	3482	broad.mit.edu	37	6	160465623	160465623	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
JMJD6	23210	broad.mit.edu	37	17	74721938	74721938	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRMP	4033	broad.mit.edu	37	12	25232338	25232338	+	Nonsense_Mutation	SNP	T	G	G	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	74972836	74972836	+	Silent	SNP	C	T	T	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAT2A	4144	broad.mit.edu	37	2	85768975	85768975	+	Silent	SNP	T	C	C	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NFKBIL2	4796	broad.mit.edu	37	8	145666223	145666223	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NHP2L1	4809	broad.mit.edu	37	22	42071041	42071041	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NOTCH2NL	388677	broad.mit.edu	37	1	145281487	145281487	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR4D1	26689	broad.mit.edu	37	17	56232813	56232813	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PAF1	54623	broad.mit.edu	37	19	39880362	39880362	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POGK	57645	broad.mit.edu	37	1	166816822	166816822	+	Silent	SNP	C	G	G	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRAMEF1	65121	broad.mit.edu	37	1	12854406	12854406	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RNF40	9810	broad.mit.edu	37	16	30777596	30777596	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SEMG1	6406	broad.mit.edu	37	20	43836172	43836172	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC47A1	55244	broad.mit.edu	37	17	19470436	19470436	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC4A2	6522	broad.mit.edu	37	7	150772425	150772425	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC6A14	11254	broad.mit.edu	37	X	115576198	115576198	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52540712	52540712	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TCOF1	6949	broad.mit.edu	37	5	149743741	149743741	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRPM7	54822	broad.mit.edu	37	15	50891464	50891464	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TSGA10IP	254187	broad.mit.edu	37	11	65714961	65714961	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBE4A	9354	broad.mit.edu	37	11	118263549	118263549	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBN2	254048	broad.mit.edu	37	7	138958746	138958746	+	Silent	SNP	T	A	A	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USP50	373509	broad.mit.edu	37	15	50835798	50835798	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VIL1	7429	broad.mit.edu	37	2	219299387	219299387	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WNT3A	89780	broad.mit.edu	37	1	228246774	228246774	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZC3H12A	80149	broad.mit.edu	37	1	37945923	37945923	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4899-01	TCGA-CJ-4899-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
