Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA7	10347	broad.mit.edu	37	19	1054031	1054031	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AGPAT5	55326	broad.mit.edu	37	8	6612685	6612685	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AVPR1A	552	broad.mit.edu	37	12	63543859	63543859	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BACH2	60468	broad.mit.edu	37	6	90647879	90647879	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BAIAP2	10458	broad.mit.edu	37	17	79027521	79027521	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BAZ2A	11176	broad.mit.edu	37	12	57007904	57007904	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C10orf91	170393	broad.mit.edu	37	10	134261287	134261287	+	Silent	SNP	C	T	T	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CASP2	835	broad.mit.edu	37	7	143000899	143000899	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CD300E	342510	broad.mit.edu	37	17	72613272	72613272	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CELA3B	23436	broad.mit.edu	37	1	22310726	22310726	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48612153	48612153	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COQ5	84274	broad.mit.edu	37	12	120966769	120966769	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
D4S234E	27065	broad.mit.edu	37	4	4389419	4389419	+	Silent	SNP	C	G	G	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DAXX	1616	broad.mit.edu	37	6	33289504	33289504	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EPC1	80314	broad.mit.edu	37	10	32635831	32635831	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM123A	219287	broad.mit.edu	37	13	25744223	25744223	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FBXO38	81545	broad.mit.edu	37	5	147778625	147778625	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108521914	108521914	+	Silent	SNP	A	G	G	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FOXO1	2308	broad.mit.edu	37	13	41134652	41134652	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FOXR2	139628	broad.mit.edu	37	X	55650703	55650703	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GAP43	2596	broad.mit.edu	37	3	115439677	115439677	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IGSF22	283284	broad.mit.edu	37	11	18738373	18738373	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IREB2	3658	broad.mit.edu	37	15	78778167	78778167	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KAT5	10524	broad.mit.edu	37	11	65484261	65484261	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94088412	94088412	+	Silent	SNP	C	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KLHL25	64410	broad.mit.edu	37	15	86311567	86311567	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LPIN1	23175	broad.mit.edu	37	2	11911528	11911528	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LSP1	4046	broad.mit.edu	37	11	1908746	1908746	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAX	4149	broad.mit.edu	37	14	65569055	65569055	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MRPS5	64969	broad.mit.edu	37	2	95780928	95780928	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MTMR15	22909	broad.mit.edu	37	15	31220813	31220813	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYO5C	55930	broad.mit.edu	37	15	52539694	52539694	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR10AG1	282770	broad.mit.edu	37	11	55735328	55735328	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR4D6	219983	broad.mit.edu	37	11	59224931	59224931	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR5V1	81696	broad.mit.edu	37	6	29323588	29323588	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52621446	52621446	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57325907	57325907	+	Silent	SNP	T	G	G	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PGD	5226	broad.mit.edu	37	1	10477169	10477169	+	Silent	SNP	C	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PHLPP1	23239	broad.mit.edu	37	18	60646514	60646514	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81183400	81183400	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLAU	5328	broad.mit.edu	37	10	75675037	75675037	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POLD1	5424	broad.mit.edu	37	19	50918766	50918766	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121651006	121651006	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121651023	121651023	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RANBP6	26953	broad.mit.edu	37	9	6014830	6014830	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RNF40	9810	broad.mit.edu	37	16	30774777	30774777	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RNPEPL1	57140	broad.mit.edu	37	2	241516160	241516160	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SEC16A	9919	broad.mit.edu	37	9	139369367	139369367	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SERPINA12	145264	broad.mit.edu	37	14	94964360	94964360	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SERPINE1	5054	broad.mit.edu	37	7	100778823	100778823	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75708659	75708659	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21331930	21331930	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPNS1	83985	broad.mit.edu	37	16	28993800	28993800	+	Silent	SNP	C	T	T	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TAF5L	27097	broad.mit.edu	37	1	229730773	229730773	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TFDP2	7029	broad.mit.edu	37	3	141692908	141692908	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TFDP3	51270	broad.mit.edu	37	X	132352095	132352095	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBR1	197131	broad.mit.edu	37	15	43281101	43281101	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WDR78	79819	broad.mit.edu	37	1	67292538	67292538	+	Silent	SNP	C	T	T	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100395076	100395076	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZDHHC9	51114	broad.mit.edu	37	X	128962964	128962964	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF154	7710	broad.mit.edu	37	19	58213740	58213740	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF395	55893	broad.mit.edu	37	8	28209116	28209116	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4913-01	TCGA-CJ-4913-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
