Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2M	2	broad.mit.edu	37	12	9225307	9225307	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ABL1	25	broad.mit.edu	37	9	133750263	133750263	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ACTR3B	57180	broad.mit.edu	37	7	152550641	152550641	+	Silent	SNP	A	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178771139	178771139	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADAR	103	broad.mit.edu	37	1	154574246	154574246	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247061603	247061603	+	Silent	SNP	G	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALDH1B1	219	broad.mit.edu	37	9	38395753	38395753	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALG13	79868	broad.mit.edu	37	X	110964871	110964871	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANKK1	255239	broad.mit.edu	37	11	113270032	113270032	+	Silent	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANKRD50	57182	broad.mit.edu	37	4	125631599	125631599	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
APOBEC1	339	broad.mit.edu	37	12	7802168	7802168	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARID5A	10865	broad.mit.edu	37	2	97217964	97217964	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARMCX5	64860	broad.mit.edu	37	X	101857826	101857826	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARMCX6	54470	broad.mit.edu	37	X	100871360	100871360	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47559972	47559972	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATP13A1	57130	broad.mit.edu	37	19	19767887	19767887	+	Silent	SNP	C	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160151511	160151511	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AXIN1	8312	broad.mit.edu	37	16	396564	396564	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AZI1	22994	broad.mit.edu	37	17	79169644	79169644	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BAT1	7919	broad.mit.edu	37	6	31507024	31507024	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BCL11B	64919	broad.mit.edu	37	14	99640573	99640573	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33565649	33565649	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C1orf14	81626	broad.mit.edu	37	1	182908433	182908433	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C9orf5	23731	broad.mit.edu	37	9	111855820	111855820	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CAMTA2	23125	broad.mit.edu	37	17	4872277	4872277	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CANX	821	broad.mit.edu	37	5	179149818	179149818	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CASQ2	845	broad.mit.edu	37	1	116243998	116243998	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCDC116	164592	broad.mit.edu	37	22	21989453	21989453	+	Silent	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCT8	10694	broad.mit.edu	37	21	30442596	30442596	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31299715	31299715	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDKL5	6792	broad.mit.edu	37	X	18622812	18622812	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDX1	1044	broad.mit.edu	37	5	149563073	149563073	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CEBPG	1054	broad.mit.edu	37	19	33870405	33870405	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238280464	238280464	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COQ5	84274	broad.mit.edu	37	12	120954469	120954469	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CRYGB	1419	broad.mit.edu	37	2	209007637	209007637	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CYP19A1	1588	broad.mit.edu	37	15	51514629	51514629	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CYP2C19	1557	broad.mit.edu	37	10	96580386	96580386	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	62973695	62973695	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DUS2L	54920	broad.mit.edu	37	16	68071947	68071947	+	Silent	SNP	T	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103093809	103093809	+	Nonsense_Mutation	SNP	T	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EFR3A	23167	broad.mit.edu	37	8	132956999	132956999	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EIF2AK2	5610	broad.mit.edu	37	2	37366825	37366825	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EIF4G1	1981	broad.mit.edu	37	3	184049812	184049812	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ELMOD3	84173	broad.mit.edu	37	2	85598666	85598666	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EMILIN2	84034	broad.mit.edu	37	18	2890714	2890714	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EML5	161436	broad.mit.edu	37	14	89202708	89202708	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ENPP3	5169	broad.mit.edu	37	6	131995388	131995388	+	Silent	SNP	A	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	111979310	111979310	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EPHX1	2052	broad.mit.edu	37	1	226027665	226027665	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ETV3	2117	broad.mit.edu	37	1	157105442	157105442	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM123C	205147	broad.mit.edu	37	2	131521736	131521736	+	Silent	SNP	A	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM153B	202134	broad.mit.edu	37	5	175528095	175528095	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM190B	54462	broad.mit.edu	37	10	86130950	86130950	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM19A4	151647	broad.mit.edu	37	3	68788346	68788346	+	Silent	SNP	G	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177249817	177249817	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48566087	48566087	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FTSJ3	117246	broad.mit.edu	37	17	61898808	61898808	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GABRE	2564	broad.mit.edu	37	X	151123262	151123262	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GNA13	10672	broad.mit.edu	37	17	63010386	63010386	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPATCH2	55105	broad.mit.edu	37	1	217665062	217665062	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR133	283383	broad.mit.edu	37	12	131616270	131616270	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GRAMD1A	57655	broad.mit.edu	37	19	35501012	35501012	+	Silent	SNP	G	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GSPT1	2935	broad.mit.edu	37	16	11971401	11971401	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HJURP	55355	broad.mit.edu	37	2	234754423	234754423	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HSP90AA1	3320	broad.mit.edu	37	14	102552583	102552583	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HSPH1	10808	broad.mit.edu	37	13	31729705	31729705	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HTR2C	3358	broad.mit.edu	37	X	113965887	113965887	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
INTS8	55656	broad.mit.edu	37	8	95861709	95861709	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IRAK1	3654	broad.mit.edu	37	X	153278674	153278674	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA0913	23053	broad.mit.edu	37	10	75556685	75556685	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94129061	94129061	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIF27	55582	broad.mit.edu	37	9	86518027	86518027	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LIPE	3991	broad.mit.edu	37	19	42930516	42930516	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LONRF3	79836	broad.mit.edu	37	X	118108850	118108850	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170103247	170103247	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAGEE1	57692	broad.mit.edu	37	X	75650469	75650469	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAP3K1	4214	broad.mit.edu	37	5	56160679	56160679	+	Nonsense_Mutation	SNP	T	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MARS2	92935	broad.mit.edu	37	2	198570416	198570416	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MCCC1	56922	broad.mit.edu	37	3	182759359	182759359	+	Silent	SNP	C	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MCM8	84515	broad.mit.edu	37	20	5948539	5948539	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MFN1	55669	broad.mit.edu	37	3	179096586	179096586	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MFSD7	84179	broad.mit.edu	37	4	677418	677418	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MIR550-1	693133	broad.mit.edu	37	7	30329467	30329467	+	miRNA	SNP	T	C	C	rs71528599	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MKRN3	7681	broad.mit.edu	37	15	23811293	23811293	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MTMR10	54893	broad.mit.edu	37	15	31234125	31234125	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYH14	79784	broad.mit.edu	37	19	50753042	50753042	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NACA	4666	broad.mit.edu	37	12	57114669	57114669	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NCAPG2	54892	broad.mit.edu	37	7	158447311	158447311	+	Silent	SNP	G	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56369055	56369055	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120462002	120462002	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36340513	36340513	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NR3C2	4306	broad.mit.edu	37	4	149356735	149356735	+	Silent	SNP	T	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OGFOD1	55239	broad.mit.edu	37	16	56485531	56485531	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OGG1	4968	broad.mit.edu	37	3	9792055	9792055	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22382616	22382616	+	Silent	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR52L1	338751	broad.mit.edu	37	11	6007950	6007950	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OSTalpha	200931	broad.mit.edu	37	3	195954575	195954575	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	118982390	118982390	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91873325	91873325	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233363106	233363106	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDIA2	64714	broad.mit.edu	37	16	336870	336870	+	Silent	SNP	T	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PHTF2	57157	broad.mit.edu	37	7	77538203	77538203	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PMP22	5376	broad.mit.edu	37	17	15142905	15142905	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121263752	121263752	+	Silent	SNP	T	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRDM12	59335	broad.mit.edu	37	9	133542139	133542139	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTK7	5754	broad.mit.edu	37	6	43107181	43107181	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTPN3	5774	broad.mit.edu	37	9	112172526	112172526	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121650685	121650685	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
QSER1	79832	broad.mit.edu	37	11	32955024	32955024	+	Silent	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAD51	5888	broad.mit.edu	37	15	41022091	41022091	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RECQL5	9400	broad.mit.edu	37	17	73657711	73657711	+	Silent	SNP	A	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RIMS4	140730	broad.mit.edu	37	20	43386410	43386410	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPH3AL	9501	broad.mit.edu	37	17	169255	169255	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237586481	237586481	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SART3	9733	broad.mit.edu	37	12	108929135	108929136	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50903133	50903133	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38962724	38962724	+	Silent	SNP	G	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SEMA4A	64218	broad.mit.edu	37	1	156127886	156127886	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC16A4	9122	broad.mit.edu	37	1	110906399	110906399	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC4A4	8671	broad.mit.edu	37	4	72316908	72316908	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SNW1	22938	broad.mit.edu	37	14	78184796	78184796	+	Silent	SNP	A	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ST6GAL2	84620	broad.mit.edu	37	2	107460175	107460175	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70514054	70514054	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SULT2A1	6822	broad.mit.edu	37	19	48385434	48385434	+	Silent	SNP	A	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TANC2	26115	broad.mit.edu	37	17	61498351	61498351	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65274893	65274893	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TFDP3	51270	broad.mit.edu	37	X	132351883	132351883	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TFE3	7030	broad.mit.edu	37	X	48900725	48900725	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
THAP9	79725	broad.mit.edu	37	4	83838940	83838940	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19698767	19698767	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77435329	77435329	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTC12	54970	broad.mit.edu	37	11	113230094	113230094	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179490104	179490104	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126216954	126216954	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	862733	862733	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
YME1L1	10730	broad.mit.edu	37	10	27437893	27437893	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZAK	51776	broad.mit.edu	37	2	174131419	174131419	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZER1	10444	broad.mit.edu	37	9	131514950	131514950	+	Splice_Site	SNP	A	C	C	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZKSCAN3	80317	broad.mit.edu	37	6	28329128	28329128	+	Silent	SNP	C	T	T	novel	unknown	TCGA-CJ-4920-01	TCGA-CJ-4920-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
