Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA8	10351	broad.mit.edu	37	17	66883567	66883567	+	Silent	SNP	G	C	C	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ACTR6	64431	broad.mit.edu	37	12	100601498	100601498	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AIDA	64853	broad.mit.edu	37	1	222867134	222867134	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BAP1	8314	broad.mit.edu	37	3	52437168	52437168	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BIRC3	330	broad.mit.edu	37	11	102206699	102206699	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BLM	641	broad.mit.edu	37	15	91292871	91292871	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BSX	390259	broad.mit.edu	37	11	122850082	122850082	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136700123	136700123	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COBLL1	22837	broad.mit.edu	37	2	165551129	165551129	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COG8	84342	broad.mit.edu	37	16	69368915	69368915	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CPAMD8	27151	broad.mit.edu	37	19	17039855	17039855	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CRY1	1407	broad.mit.edu	37	12	107393578	107393578	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155155839	155155839	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAJC16	23341	broad.mit.edu	37	1	15893684	15893684	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103349892	103349892	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
E2F3	1871	broad.mit.edu	37	6	20481597	20481597	+	Silent	SNP	C	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EIF2AK4	440275	broad.mit.edu	37	15	40308848	40308848	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EVI2B	2124	broad.mit.edu	37	17	29632303	29632303	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GFRA4	64096	broad.mit.edu	37	20	3641432	3641432	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR152	390212	broad.mit.edu	37	11	67219407	67219407	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR45	11250	broad.mit.edu	37	2	105859013	105859013	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IGDCC3	9543	broad.mit.edu	37	15	65624284	65624284	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IGSF9B	22997	broad.mit.edu	37	11	133807380	133807380	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IL16	3603	broad.mit.edu	37	15	81591913	81591913	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
INTS4	92105	broad.mit.edu	37	11	77614629	77614629	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IRS1	3667	broad.mit.edu	37	2	227662246	227662246	+	Silent	SNP	G	C	C	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	123987876	123987876	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KCNV2	169522	broad.mit.edu	37	9	2718826	2718826	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KHK	3795	broad.mit.edu	37	2	27320391	27320391	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KTN1	3895	broad.mit.edu	37	14	56104005	56104005	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LPIN3	64900	broad.mit.edu	37	20	39984632	39984632	+	Silent	SNP	T	C	C	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LTBP3	4054	broad.mit.edu	37	11	65308037	65308037	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LUC7L2	51631	broad.mit.edu	37	7	139086943	139086943	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MACROD2	140733	broad.mit.edu	37	20	15412069	15412069	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MFSD2A	84879	broad.mit.edu	37	1	40430907	40430907	+	Silent	SNP	C	T	T	rs115805986	by1000genomes	TCGA-CJ-4923-01	TCGA-CJ-4923-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MGAT3	4248	broad.mit.edu	37	22	39884700	39884700	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50724674	50724674	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR4B1	119765	broad.mit.edu	37	11	48238947	48238947	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OTOP1	133060	broad.mit.edu	37	4	4190659	4190659	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52582140	52582140	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDH1	5097	broad.mit.edu	37	5	141233715	141233715	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PNPLA6	10908	broad.mit.edu	37	19	7615512	7615512	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRPF8	10594	broad.mit.edu	37	17	1579248	1579248	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PYDC2	152138	broad.mit.edu	37	3	191179038	191179038	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RUNDC3B	154661	broad.mit.edu	37	7	87436831	87436831	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SELENBP1	8991	broad.mit.edu	37	1	151339307	151339307	+	Silent	SNP	C	T	T	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SFRS17A	8227	broad.mit.edu	37	X	1712782	1712782	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SRPX2	27286	broad.mit.edu	37	X	99920579	99920579	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
STK17B	9262	broad.mit.edu	37	2	197002269	197002269	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SYNJ2	8871	broad.mit.edu	37	6	158497795	158497795	+	Silent	SNP	A	G	G	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TBL1Y	90665	broad.mit.edu	37	Y	6931951	6931951	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TOP3B	8940	broad.mit.edu	37	22	22317229	22317229	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TUBD1	51174	broad.mit.edu	37	17	57963523	57963523	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100148945	100148945	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFR	51663	broad.mit.edu	37	5	32404076	32404076	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF184	7738	broad.mit.edu	37	6	27420046	27420046	+	Nonsense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZSWIM4	65249	broad.mit.edu	37	19	13910687	13910687	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4923-01	TCGA-CJ-4923-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
