Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCB5	340273	broad.mit.edu	37	7	20685734	20685734	+	Silent	SNP	T	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ACAP2	23527	broad.mit.edu	37	3	195009916	195009916	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AMAC1	146861	broad.mit.edu	37	17	33521121	33521121	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANXA6	309	broad.mit.edu	37	5	150519791	150519791	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
APH1B	83464	broad.mit.edu	37	15	63569840	63569840	+	Silent	SNP	C	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARMCX5	64860	broad.mit.edu	37	X	101858509	101858509	+	Silent	SNP	A	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATP2A1	487	broad.mit.edu	37	16	28909648	28909648	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BMP5	653	broad.mit.edu	37	6	55620404	55620404	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BRPF3	27154	broad.mit.edu	37	6	36185716	36185716	+	Silent	SNP	A	G	G	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C11orf46	120534	broad.mit.edu	37	11	30358133	30358133	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C14orf106	55320	broad.mit.edu	37	14	45673409	45673409	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C5orf54	63920	broad.mit.edu	37	5	159821039	159821039	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C9orf131	138724	broad.mit.edu	37	9	35044086	35044086	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CIC	23152	broad.mit.edu	37	19	42797181	42797181	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140122558	140122558	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COIL	8161	broad.mit.edu	37	17	55028280	55028280	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207867951	207867951	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34033301	34033301	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11593688	11593688	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56357198	56357198	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EIF2C2	27161	broad.mit.edu	37	8	141559213	141559213	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EIF2C3	192669	broad.mit.edu	37	1	36509078	36509078	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	96706398	96706398	+	Silent	SNP	A	G	G	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EXT1	2131	broad.mit.edu	37	8	118825167	118825167	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
F11	2160	broad.mit.edu	37	4	187201213	187201213	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FGD5	152273	broad.mit.edu	37	3	14964587	14964587	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FNDC3B	64778	broad.mit.edu	37	3	172096213	172096213	+	Silent	SNP	C	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FSTL4	23105	broad.mit.edu	37	5	132736492	132736492	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GGT5	2687	broad.mit.edu	37	22	24621029	24621029	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135482053	135482053	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPRASP2	114928	broad.mit.edu	37	X	101971084	101971084	+	Silent	SNP	C	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPRC5A	9052	broad.mit.edu	37	12	13061472	13061472	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13717155	13717155	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HIVEP1	3096	broad.mit.edu	37	6	12120167	12120167	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IRAK1BP1	134728	broad.mit.edu	37	6	79607842	79607842	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39763950	39763950	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LY6E	4061	broad.mit.edu	37	8	144103076	144103077	+	Missense_Mutation	DNP	GC	CT	CT	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	GC	GC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LYL1	4066	broad.mit.edu	37	19	13211728	13211728	+	Silent	SNP	C	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MARCH7	64844	broad.mit.edu	37	2	160585646	160585646	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MRPS18A	55168	broad.mit.edu	37	6	43655468	43655468	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUDENG	55745	broad.mit.edu	37	14	57748924	57748924	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236192916	236192916	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR5P2	120065	broad.mit.edu	37	11	7818120	7818120	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHGB3	56102	broad.mit.edu	37	5	140750994	140750994	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDE6B	5158	broad.mit.edu	37	4	654278	654278	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLA2G4A	5321	broad.mit.edu	37	1	186839572	186839572	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PODXL	5420	broad.mit.edu	37	7	131194125	131194125	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POLDIP2	26073	broad.mit.edu	37	17	26681591	26681591	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRKG2	5593	broad.mit.edu	37	4	82126123	82126123	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40944543	40944544	+	Missense_Mutation	DNP	CC	AA	AA	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPAP1	26015	broad.mit.edu	37	15	41822090	41822090	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RSPRY1	89970	broad.mit.edu	37	16	57265168	57265168	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42618593	42618593	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC13A5	284111	broad.mit.edu	37	17	6594203	6594203	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC17A5	26503	broad.mit.edu	37	6	74354149	74354149	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC44A4	80736	broad.mit.edu	37	6	31846720	31846720	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48809480	48809480	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TAF15	8148	broad.mit.edu	37	17	34161584	34161584	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TDRD9	122402	broad.mit.edu	37	14	104465033	104465033	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10188322	10188322	+	Splice_Site	SNP	T	C	C	rs5030815	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WDR27	253769	broad.mit.edu	37	6	170070745	170070745	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZMYM4	9202	broad.mit.edu	37	1	35870746	35870746	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF594	84622	broad.mit.edu	37	17	5086703	5086703	+	Silent	SNP	G	T	T	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF749	388567	broad.mit.edu	37	19	57954668	57954668	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-CZ-4856-01	TCGA-CZ-4856-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
