Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ALDH1A1	216	hgsc.bcm.edu	37	9	75555088	75555088	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
APC	324	hgsc.bcm.edu	37	5	112175680	112175680	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C3	718	hgsc.bcm.edu	37	19	6712358	6712358	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C3orf63	23272	hgsc.bcm.edu	37	3	56667432	56667432	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM5B	57795	hgsc.bcm.edu	37	1	177242709	177242709	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM71B	153745	hgsc.bcm.edu	37	5	156592758	156592758	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HEPHL1	341208	hgsc.bcm.edu	37	11	93836116	93836116	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HERC1	8925	hgsc.bcm.edu	37	15	63986164	63986164	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IQGAP1	8826	hgsc.bcm.edu	37	15	91020913	91020913	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LAMA2	3908	hgsc.bcm.edu	37	6	129371227	129371227	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LIPE	3991	hgsc.bcm.edu	37	19	42912472	42912472	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LPHN3	23284	hgsc.bcm.edu	37	4	62598858	62598858	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LYST	1130	hgsc.bcm.edu	37	1	235971939	235971939	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MDH2	4191	hgsc.bcm.edu	37	7	75695632	75695632	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MOCS2	4338	hgsc.bcm.edu	37	5	52404436	52404436	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NT5C1B	93034	hgsc.bcm.edu	37	2	18765441	18765441	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OTC	5009	hgsc.bcm.edu	37	X	38262963	38262963	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PIK3C3	5289	hgsc.bcm.edu	37	18	39576651	39576651	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTOV1	53635	hgsc.bcm.edu	37	19	50358311	50358311	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RALGAPA1	253959	hgsc.bcm.edu	37	14	36143766	36143766	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RTTN	25914	hgsc.bcm.edu	37	18	67834206	67834206	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TPR	7175	hgsc.bcm.edu	37	1	186301459	186301459	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VHL	7428	hgsc.bcm.edu	37	3	10188309	10188309	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WDFY4	57705	hgsc.bcm.edu	37	10	49988080	49988080	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WNK3	65267	hgsc.bcm.edu	37	X	54228597	54228597	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZC3H7A	29066	hgsc.bcm.edu	37	16	11850099	11850099	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5452-01	TCGA-CZ-5452-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
