Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ARG1	383	hgsc.bcm.edu	37	6	131904255	131904256	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ASMT	438	hgsc.bcm.edu	37	X	1755401	1755401	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATAD5	79915	hgsc.bcm.edu	37	17	29182285	29182285	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C16orf73	254528	hgsc.bcm.edu	37	16	1884331	1884331	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C2CD3	26005	hgsc.bcm.edu	37	11	73834106	73834106	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDC25C	995	hgsc.bcm.edu	37	5	137666708	137666708	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDK12	51755	hgsc.bcm.edu	37	17	37682372	37682372	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM19A2	338811	hgsc.bcm.edu	37	12	62148732	62148732	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FCRL4	83417	hgsc.bcm.edu	37	1	157557704	157557704	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GPNMB	10457	hgsc.bcm.edu	37	7	23309735	23309735	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GTDC1	79712	hgsc.bcm.edu	37	2	144899563	144899563	+	Missense_Mutation	SNP	G	G	A	rs114650281	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GTDC1	79712	hgsc.bcm.edu	37	2	144899563	144899564	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	GA	GA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HOXA1	3198	hgsc.bcm.edu	37	7	27135314	27135316	+	In_Frame_Del	DEL	CGA	CGA	-	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	CGA	CGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRAS	3845	hgsc.bcm.edu	37	12	25380278	25380278	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LMLN	89782	hgsc.bcm.edu	37	3	197748373	197748373	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRP4	4038	hgsc.bcm.edu	37	11	46895081	46895081	+	Silent	SNP	G	G	A	rs17848229	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRRC4C	57689	hgsc.bcm.edu	37	11	40136130	40136130	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRTOMT	220074	hgsc.bcm.edu	37	11	71816983	71816983	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NLRP9	338321	hgsc.bcm.edu	37	19	56243947	56243947	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NR1I2	8856	hgsc.bcm.edu	37	3	119528965	119528965	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NRP1	8829	hgsc.bcm.edu	37	10	33474623	33474623	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OXCT1	5019	hgsc.bcm.edu	37	5	41862745	41862745	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PARP4	143	hgsc.bcm.edu	37	13	25033188	25033188	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PBRM1	55193	hgsc.bcm.edu	37	3	52696199	52696199	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PEX5L	51555	hgsc.bcm.edu	37	3	179592212	179592212	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PIK3C2A	5286	hgsc.bcm.edu	37	11	17135986	17135986	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLCZ1	89869	hgsc.bcm.edu	37	12	18836248	18836248	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PSMD3	5709	hgsc.bcm.edu	37	17	38153787	38153787	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTEN	5728	hgsc.bcm.edu	37	10	89690845	89690845	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTEN	5728	hgsc.bcm.edu	37	10	89717714	89717714	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RFC1	5981	hgsc.bcm.edu	37	4	39297338	39297338	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RIPK2	8767	hgsc.bcm.edu	37	8	90796294	90796294	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RPL3	6122	hgsc.bcm.edu	37	22	39713525	39713525	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SEC61B	10952	hgsc.bcm.edu	37	9	101984847	101984847	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SEMA3D	223117	hgsc.bcm.edu	37	7	84636124	84636124	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC2A4RG	56731	hgsc.bcm.edu	37	20	62373331	62373331	+	Silent	SNP	T	T	A	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
STMN2	11075	hgsc.bcm.edu	37	8	80549106	80549106	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRAF3IP2	10758	hgsc.bcm.edu	37	6	111913024	111913024	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRPM7	54822	hgsc.bcm.edu	37	15	50940938	50940938	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TTC37	9652	hgsc.bcm.edu	37	5	94876456	94876456	+	Silent	SNP	T	T	G	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
YTHDF3	253943	hgsc.bcm.edu	37	8	64099319	64099319	+	Missense_Mutation	SNP	G	G	A	rs61745071	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZMYM2	7750	hgsc.bcm.edu	37	13	20637092	20637092	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5454-01	TCGA-CZ-5454-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
