Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACSBG1	23205	hgsc.bcm.edu	37	15	78485853	78485853	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
AFAP1L1	134265	hgsc.bcm.edu	37	5	148680717	148680717	+	Missense_Mutation	SNP	G	G	A	rs61734415	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
APOB	338	hgsc.bcm.edu	37	2	21232203	21232203	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARNT2	9915	hgsc.bcm.edu	37	15	80762712	80762712	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATP1A2	477	hgsc.bcm.edu	37	1	160091025	160091025	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATP6V0A4	50617	hgsc.bcm.edu	37	7	138424285	138424285	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C4orf29	80167	hgsc.bcm.edu	37	4	128941249	128941249	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CACNA1D	776	hgsc.bcm.edu	37	3	53777118	53777118	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CASP1	834	hgsc.bcm.edu	37	11	104897592	104897592	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCDC99	54908	hgsc.bcm.edu	37	5	169026150	169026150	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CD2AP	23607	hgsc.bcm.edu	37	6	47567071	47567071	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CHD7	55636	hgsc.bcm.edu	37	8	61757864	61757864	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CLMN	79789	hgsc.bcm.edu	37	14	95669872	95669872	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CLYBL	171425	hgsc.bcm.edu	37	13	100543598	100543598	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COL1A2	1278	hgsc.bcm.edu	37	7	94051214	94051214	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CTNND2	1501	hgsc.bcm.edu	37	5	11159792	11159792	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DDX3X	1654	hgsc.bcm.edu	37	X	41203543	41203544	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DLC1	10395	hgsc.bcm.edu	37	8	13356870	13356870	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EPHB6	2051	hgsc.bcm.edu	37	7	142563322	142563322	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM186A	121006	hgsc.bcm.edu	37	12	50745857	50745857	+	Missense_Mutation	SNP	T	T	G	rs34602257	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GPM6A	2823	hgsc.bcm.edu	37	4	176556193	176556193	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HAGHL	84264	hgsc.bcm.edu	37	16	778954	778955	+	Frame_Shift_Ins	INS	-	-	GG	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HECW1	23072	hgsc.bcm.edu	37	7	43360303	43360303	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIF1A	547	hgsc.bcm.edu	37	2	241724433	241724433	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRBA	987	hgsc.bcm.edu	37	4	151392833	151392833	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MADCAM1	8174	hgsc.bcm.edu	37	19	501738	501738	+	Missense_Mutation	SNP	C	C	A	rs1063736	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAML1	9794	hgsc.bcm.edu	37	5	179201812	179201812	+	Silent	SNP	C	C	G	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MYST3	7994	hgsc.bcm.edu	37	8	41906418	41906418	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NEFH	4744	hgsc.bcm.edu	37	22	29885577	29885578	+	In_Frame_Ins	INS	-	-	AGAAGGCCAAGTCCCCTG	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NF1	4763	hgsc.bcm.edu	37	17	29586049	29586049	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NFE2L2	4780	hgsc.bcm.edu	37	2	178098960	178098960	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NIPSNAP3B	55335	hgsc.bcm.edu	37	9	107535329	107535329	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NOTCH2	4853	hgsc.bcm.edu	37	1	120458045	120458045	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PARN	5073	hgsc.bcm.edu	37	16	14711480	14711480	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PARP16	54956	hgsc.bcm.edu	37	15	65558909	65558909	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PASD1	139135	hgsc.bcm.edu	37	X	150842545	150842545	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PBRM1	55193	hgsc.bcm.edu	37	3	52588818	52588818	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCDHB9	56127	hgsc.bcm.edu	37	5	140569080	140569080	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PDE11A	50940	hgsc.bcm.edu	37	2	178936671	178936671	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PDE6A	5145	hgsc.bcm.edu	37	5	149286875	149286875	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PHYH	5264	hgsc.bcm.edu	37	10	13325777	13325777	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PIF1	80119	hgsc.bcm.edu	37	15	65114788	65114788	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLCZ1	89869	hgsc.bcm.edu	37	12	18836248	18836248	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
POT1	25913	hgsc.bcm.edu	37	7	124493109	124493109	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRRC2B	84726	hgsc.bcm.edu	37	9	134357757	134357757	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTPDC1	138639	hgsc.bcm.edu	37	9	96860800	96860800	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RAB33A	9363	hgsc.bcm.edu	37	X	129306194	129306194	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RASA2	5922	hgsc.bcm.edu	37	3	141328313	141328313	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RFC4	5984	hgsc.bcm.edu	37	3	186507790	186507790	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RRS1	23212	hgsc.bcm.edu	37	8	67342089	67342089	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SCUBE2	57758	hgsc.bcm.edu	37	11	9091015	9091015	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SELE	6401	hgsc.bcm.edu	37	1	169701065	169701065	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SETD2	29072	hgsc.bcm.edu	37	3	47164273	47164273	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SH3RF1	57630	hgsc.bcm.edu	37	4	170190302	170190302	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SI	6476	hgsc.bcm.edu	37	3	164733767	164733767	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC7A2	6542	hgsc.bcm.edu	37	8	17409424	17409424	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLCO4A1	28231	hgsc.bcm.edu	37	20	61299368	61299368	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SRP72	6731	hgsc.bcm.edu	37	4	57349375	57349375	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMEM45A	55076	hgsc.bcm.edu	37	3	100287743	100287743	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMEM59	9528	hgsc.bcm.edu	37	1	54509110	54509110	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF704	619279	hgsc.bcm.edu	37	8	81577290	81577290	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF805	390980	hgsc.bcm.edu	37	19	57752278	57752278	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5456-01	TCGA-CZ-5456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
