Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA1	19	hgsc.bcm.edu	37	9	107573110	107573110	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
AHR	196	hgsc.bcm.edu	37	7	17379447	17379448	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ANKRD1	27063	hgsc.bcm.edu	37	10	92679944	92679944	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARID2	196528	hgsc.bcm.edu	37	12	46245726	46245726	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATM	472	hgsc.bcm.edu	37	11	108203548	108203548	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CLUAP1	23059	hgsc.bcm.edu	37	16	3573215	3573215	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNAH14	127602	hgsc.bcm.edu	37	1	225266907	225266907	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DUOX1	53905	hgsc.bcm.edu	37	15	45434244	45434244	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM160A1	729830	hgsc.bcm.edu	37	4	152577469	152577469	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FRMPD1	22844	hgsc.bcm.edu	37	9	37744613	37744613	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
G3BP1	10146	hgsc.bcm.edu	37	5	151179550	151179550	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GDPD1	284161	hgsc.bcm.edu	37	17	57334552	57334552	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GJA10	84694	hgsc.bcm.edu	37	6	90604723	90604723	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GOLGA4	2803	hgsc.bcm.edu	37	3	37343778	37343778	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
INPP4B	8821	hgsc.bcm.edu	37	4	143067033	143067034	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
JHDM1D	80853	hgsc.bcm.edu	37	7	139796808	139796808	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAGEA5	4104	hgsc.bcm.edu	37	X	151283746	151283746	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MIA2	117153	hgsc.bcm.edu	37	14	39717089	39717089	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MLL3	58508	hgsc.bcm.edu	37	7	151960100	151960100	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MYH1	4619	hgsc.bcm.edu	37	17	10400637	10400637	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NUP153	9972	hgsc.bcm.edu	37	6	17640249	17640249	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OSGEP	55644	hgsc.bcm.edu	37	14	20916148	20916148	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PBRM1	55193	hgsc.bcm.edu	37	3	52584765	52584766	+	Frame_Shift_Ins	INS	-	-	TT	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PKN2	5586	hgsc.bcm.edu	37	1	89236126	89236126	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLG	5340	hgsc.bcm.edu	37	6	161155095	161155095	+	Silent	SNP	C	C	T	rs113153850	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRUNE2	158471	hgsc.bcm.edu	37	9	79438564	79438564	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRUNE2	158471	hgsc.bcm.edu	37	9	79438565	79438565	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTPRJ	5795	hgsc.bcm.edu	37	11	48188814	48188814	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTPRR	5801	hgsc.bcm.edu	37	12	71033004	71033004	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PYGO1	26108	hgsc.bcm.edu	37	15	55838992	55838992	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RELN	5649	hgsc.bcm.edu	37	7	103113286	103113286	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RG9MTD2	93587	hgsc.bcm.edu	37	4	100479309	100479309	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SERPINA10	51156	hgsc.bcm.edu	37	14	94756558	94756560	+	In_Frame_Del	DEL	TGA	TGA	-	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	TGA	TGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SETD2	29072	hgsc.bcm.edu	37	3	47139521	47139523	+	In_Frame_Del	DEL	AGG	AGG	-	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	AGG	AGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SFMBT2	57713	hgsc.bcm.edu	37	10	7217995	7217995	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SFMBT2	57713	hgsc.bcm.edu	37	10	7217996	7217996	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TAS2R50	259296	hgsc.bcm.edu	37	12	11138584	11138584	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TAX1BP1	8887	hgsc.bcm.edu	37	7	27856058	27856059	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
THRAP3	9967	hgsc.bcm.edu	37	1	36752383	36752383	+	Silent	SNP	T	T	A	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TPD52L3	89882	hgsc.bcm.edu	37	9	6328676	6328676	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UPF2	26019	hgsc.bcm.edu	37	10	12039754	12039754	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VHL	7428	hgsc.bcm.edu	37	3	10191593	10191593	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WSB2	55884	hgsc.bcm.edu	37	12	118481141	118481141	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WSB2	55884	hgsc.bcm.edu	37	12	118481144	118481144	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZCCHC9	84240	hgsc.bcm.edu	37	5	80608438	80608438	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZMPSTE24	10269	hgsc.bcm.edu	37	1	40726535	40726535	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF100	163227	hgsc.bcm.edu	37	19	21909967	21909967	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF287	57336	hgsc.bcm.edu	37	17	16456102	16456102	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5460-01	TCGA-CZ-5460-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
