Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACSM5	54988	hgsc.bcm.edu	37	16	20451155	20451155	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ANAPC1	64682	hgsc.bcm.edu	37	2	112588911	112588911	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARHGAP21	57584	hgsc.bcm.edu	37	10	25010766	25010766	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATP6V0A1	535	hgsc.bcm.edu	37	17	40639358	40639358	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
B4GALNT1	2583	hgsc.bcm.edu	37	12	58020659	58020659	+	Silent	SNP	A	A	G	rs113015273	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BEND5	79656	hgsc.bcm.edu	37	1	49202056	49202056	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C2orf3	6936	hgsc.bcm.edu	37	2	75893178	75893178	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C2orf80	389073	hgsc.bcm.edu	37	2	209051784	209051784	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C8orf37	157657	hgsc.bcm.edu	37	8	96272706	96272706	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCNB3	85417	hgsc.bcm.edu	37	X	50053811	50053811	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDON	50937	hgsc.bcm.edu	37	11	125891274	125891274	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COL21A1	81578	hgsc.bcm.edu	37	6	55933843	55933843	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CSNK1A1L	122011	hgsc.bcm.edu	37	13	37679100	37679100	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DLG2	1740	hgsc.bcm.edu	37	11	83544667	83544667	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EDIL3	10085	hgsc.bcm.edu	37	5	83402565	83402565	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM164A	51101	hgsc.bcm.edu	37	8	79610701	79610701	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM186A	121006	hgsc.bcm.edu	37	12	50745913	50745948	+	In_Frame_Del	DEL	TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA	TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA	-	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA	TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM21A	387680	hgsc.bcm.edu	37	10	51829431	51829431	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FBXO43	286151	hgsc.bcm.edu	37	8	101146397	101146398	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GGNBP2	79893	hgsc.bcm.edu	37	17	34935726	34935726	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GREB1L	80000	hgsc.bcm.edu	37	18	19093876	19093876	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HDAC7	51564	hgsc.bcm.edu	37	12	48185052	48185052	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LIG4	3981	hgsc.bcm.edu	37	13	108861063	108861063	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LOXHD1	125336	hgsc.bcm.edu	37	18	44122812	44122812	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LPPR1	54886	hgsc.bcm.edu	37	9	104048510	104048510	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MEGF10	84466	hgsc.bcm.edu	37	5	126774247	126774247	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MET	4233	hgsc.bcm.edu	37	7	116339800	116339800	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MRPS18C	51023	hgsc.bcm.edu	37	4	84379580	84379580	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NAIP	4671	hgsc.bcm.edu	37	5	70308329	70308329	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NPR1	4881	hgsc.bcm.edu	37	1	153659728	153659728	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NTRK3	4916	hgsc.bcm.edu	37	15	88423631	88423631	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PGPEP1L	145814	hgsc.bcm.edu	37	15	99512702	99512702	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PIK3CA	5290	hgsc.bcm.edu	37	3	178952083	178952083	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RAB18	22931	hgsc.bcm.edu	37	10	27822869	27822869	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RGS9	8787	hgsc.bcm.edu	37	17	63154436	63154436	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RPS4Y1	6192	hgsc.bcm.edu	37	Y	2709666	2709666	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RQCD1	9125	hgsc.bcm.edu	37	2	219447710	219447710	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RQCD1	9125	hgsc.bcm.edu	37	2	219447712	219447712	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RYR1	6261	hgsc.bcm.edu	37	19	39028524	39028524	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SCGB1D1	10648	hgsc.bcm.edu	37	11	61960873	61960873	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SETD2	29072	hgsc.bcm.edu	37	3	47144880	47144880	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SGPL1	8879	hgsc.bcm.edu	37	10	72631655	72631655	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLFN14	342618	hgsc.bcm.edu	37	17	33884519	33884519	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SUV39H2	79723	hgsc.bcm.edu	37	10	14941677	14941677	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SYNE1	23345	hgsc.bcm.edu	37	6	152565703	152565703	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMOD2	29767	hgsc.bcm.edu	37	15	52098676	52098676	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TP53INP1	94241	hgsc.bcm.edu	37	8	95952145	95952145	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VRK2	7444	hgsc.bcm.edu	37	2	58275998	58275998	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WWP1	11059	hgsc.bcm.edu	37	8	87460476	87460476	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZFP14	57677	hgsc.bcm.edu	37	19	36832152	36832152	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5461-01	TCGA-CZ-5461-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
