Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA13	154664	hgsc.bcm.edu	37	7	48314043	48314043	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ACOT9	23597	hgsc.bcm.edu	37	X	23754070	23754070	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ACSBG1	23205	hgsc.bcm.edu	37	15	78526760	78526760	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
AFAP1	60312	hgsc.bcm.edu	37	4	7783208	7783208	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ANKRD34B	340120	hgsc.bcm.edu	37	5	79855596	79855596	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ASCC3	10973	hgsc.bcm.edu	37	6	101110412	101110412	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATM	472	hgsc.bcm.edu	37	11	108186612	108186612	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BARD1	580	hgsc.bcm.edu	37	2	215632207	215632207	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BIRC2	329	hgsc.bcm.edu	37	11	102221673	102221673	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C11orf41	25758	hgsc.bcm.edu	37	11	33565134	33565134	+	Silent	SNP	C	C	T	rs78046896	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CA10	56934	hgsc.bcm.edu	37	17	50149723	50149723	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CETP	1071	hgsc.bcm.edu	37	16	57003424	57003424	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CHD7	55636	hgsc.bcm.edu	37	8	61732614	61732614	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CXCR6	10663	hgsc.bcm.edu	37	3	45988547	45988547	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DDB1	1642	hgsc.bcm.edu	37	11	61081632	61081632	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DISP1	84976	hgsc.bcm.edu	37	1	223179160	223179160	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DMP1	1758	hgsc.bcm.edu	37	4	88583134	88583134	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DMRT3	58524	hgsc.bcm.edu	37	9	990589	990589	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ECHDC3	79746	hgsc.bcm.edu	37	10	11797428	11797428	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ETV1	2115	hgsc.bcm.edu	37	7	13975450	13975450	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM70B	348013	hgsc.bcm.edu	37	13	114514719	114514719	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HMCN1	83872	hgsc.bcm.edu	37	1	185953431	185953431	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IL20RB	53833	hgsc.bcm.edu	37	3	136710849	136710849	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIAA0564	23078	hgsc.bcm.edu	37	13	42275640	42275640	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIF4B	285643	hgsc.bcm.edu	37	5	154394373	154394373	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KLF8	11279	hgsc.bcm.edu	37	X	56292017	56292017	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LOXHD1	125336	hgsc.bcm.edu	37	18	44114312	44114312	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAK	4117	hgsc.bcm.edu	37	6	10796259	10796259	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MSH2	4436	hgsc.bcm.edu	37	2	47707855	47707855	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NCKAP5	344148	hgsc.bcm.edu	37	2	133540313	133540313	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NF2	4771	hgsc.bcm.edu	37	22	30051652	30051652	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NOV	4856	hgsc.bcm.edu	37	8	120435157	120435157	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NSD1	64324	hgsc.bcm.edu	37	5	176687051	176687051	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PAPD4	167153	hgsc.bcm.edu	37	5	78977830	78977830	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCNX	22990	hgsc.bcm.edu	37	14	71514655	71514655	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLXNA4	91584	hgsc.bcm.edu	37	7	131982903	131982903	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PPP2R3A	5523	hgsc.bcm.edu	37	3	135809482	135809482	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRPF19	27339	hgsc.bcm.edu	37	11	60671329	60671329	+	Silent	SNP	A	A	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTGS2	5743	hgsc.bcm.edu	37	1	186647484	186647484	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTPRT	11122	hgsc.bcm.edu	37	20	40713330	40713330	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RAPGEF3	10411	hgsc.bcm.edu	37	12	48137448	48137448	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SFTPD	6441	hgsc.bcm.edu	37	10	81702178	81702178	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SPTA1	6708	hgsc.bcm.edu	37	1	158618345	158618345	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SYK	6850	hgsc.bcm.edu	37	9	93636536	93636536	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TAF1L	138474	hgsc.bcm.edu	37	9	32635190	32635190	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
THOC7	80145	hgsc.bcm.edu	37	3	63824088	63824088	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TNMD	64102	hgsc.bcm.edu	37	X	99852576	99852576	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TTN	7273	hgsc.bcm.edu	37	2	179406075	179406075	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UBR2	23304	hgsc.bcm.edu	37	6	42637945	42637945	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZBTB41	360023	hgsc.bcm.edu	37	1	197169316	197169316	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF24	7572	hgsc.bcm.edu	37	18	32919802	32919802	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF879	345462	hgsc.bcm.edu	37	5	178459326	178459326	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5462-01	TCGA-CZ-5462-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
