Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AP4M1	9179	hgsc.bcm.edu	37	7	99700547	99700547	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
B4GALNT3	283358	hgsc.bcm.edu	37	12	667220	667220	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C11orf93	120376	hgsc.bcm.edu	37	11	111179126	111179126	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C16orf3	750	hgsc.bcm.edu	37	16	90095480	90095480	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C1orf168	199920	hgsc.bcm.edu	37	1	57189298	57189298	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCDC129	223075	hgsc.bcm.edu	37	7	31617614	31617614	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CLCN6	1185	hgsc.bcm.edu	37	1	11896171	11896171	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CLDN10	9071	hgsc.bcm.edu	37	13	96230215	96230215	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CR1	1378	hgsc.bcm.edu	37	1	207790124	207790124	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CRIPAK	285464	hgsc.bcm.edu	37	4	1388622	1388623	+	Frame_Shift_Ins	INS	-	-	CA	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ELTD1	64123	hgsc.bcm.edu	37	1	79387344	79387344	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GALNT11	63917	hgsc.bcm.edu	37	7	151791383	151791383	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GUCY1A3	2982	hgsc.bcm.edu	37	4	156634339	156634339	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCND2	3751	hgsc.bcm.edu	37	7	119915447	119915447	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCNK5	8645	hgsc.bcm.edu	37	6	39162007	39162007	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KLHL32	114792	hgsc.bcm.edu	37	6	97423877	97423877	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LPCAT3	10162	hgsc.bcm.edu	37	12	7090783	7090783	+	Silent	SNP	A	A	C	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAML3	55534	hgsc.bcm.edu	37	4	140640694	140640694	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MARCH5	54708	hgsc.bcm.edu	37	10	94110949	94110949	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAX	4149	hgsc.bcm.edu	37	14	65560495	65560495	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MMP12	4321	hgsc.bcm.edu	37	11	102736586	102736586	+	Silent	SNP	A	A	C	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MMP8	4317	hgsc.bcm.edu	37	11	102595498	102595498	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MYH11	4629	hgsc.bcm.edu	37	16	15880487	15880487	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NLRP7	199713	hgsc.bcm.edu	37	19	55450708	55450708	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NTRK3	4916	hgsc.bcm.edu	37	15	88423602	88423602	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NXNL2	158046	hgsc.bcm.edu	37	9	91159434	91159434	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR2J2	26707	hgsc.bcm.edu	37	6	29141585	29141585	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR4S2	219431	hgsc.bcm.edu	37	11	55418663	55418663	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PEAK1	79834	hgsc.bcm.edu	37	15	77471164	77471164	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PIK3CG	5294	hgsc.bcm.edu	37	7	106513314	106513314	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PPP1R3A	5506	hgsc.bcm.edu	37	7	113518058	113518058	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PSMC3IP	29893	hgsc.bcm.edu	37	17	40725152	40725152	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RABL3	285282	hgsc.bcm.edu	37	3	120461341	120461341	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RFC4	5984	hgsc.bcm.edu	37	3	186508151	186508151	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RPL26L1	51121	hgsc.bcm.edu	37	5	172386880	172386880	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SGIP1	84251	hgsc.bcm.edu	37	1	67161174	67161174	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC3A1	6519	hgsc.bcm.edu	37	2	44547384	44547385	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLCO3A1	28232	hgsc.bcm.edu	37	15	92669422	92669422	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SMAD4	4089	hgsc.bcm.edu	37	18	48573506	48573506	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SRRT	51593	hgsc.bcm.edu	37	7	100479746	100479746	+	Silent	SNP	C	C	G	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMEM98	26022	hgsc.bcm.edu	37	17	31260288	31260288	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TP53	7157	hgsc.bcm.edu	37	17	7577124	7577124	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TPRN	286262	hgsc.bcm.edu	37	9	140093554	140093554	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VHL	7428	hgsc.bcm.edu	37	3	10188206	10188206	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VPS13C	54832	hgsc.bcm.edu	37	15	62214721	62214721	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZC3H13	23091	hgsc.bcm.edu	37	13	46543242	46543242	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZCCHC6	79670	hgsc.bcm.edu	37	9	88924130	88924130	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZMYM2	7750	hgsc.bcm.edu	37	13	20660011	20660011	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF564	163050	hgsc.bcm.edu	37	19	12638453	12638453	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF609	23060	hgsc.bcm.edu	37	15	64967099	64967099	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF677	342926	hgsc.bcm.edu	37	19	53740523	53740523	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5463-01	TCGA-CZ-5463-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
