Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACVR1B	91	hgsc.bcm.edu	37	12	52374764	52374764	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ALDH18A1	5832	hgsc.bcm.edu	37	10	97373858	97373858	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ANAPC1	64682	hgsc.bcm.edu	37	2	112625654	112625654	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ANKRD17	26057	hgsc.bcm.edu	37	4	73985963	73985963	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARHGAP20	57569	hgsc.bcm.edu	37	11	110451792	110451792	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARHGEF3	50650	hgsc.bcm.edu	37	3	56789107	56789107	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARMC4	55130	hgsc.bcm.edu	37	10	28274097	28274097	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C1orf25	81627	hgsc.bcm.edu	37	1	185108635	185108635	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C7orf66	154907	hgsc.bcm.edu	37	7	108524166	108524166	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CMPK1	51727	hgsc.bcm.edu	37	1	47838692	47838692	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DOCK7	85440	hgsc.bcm.edu	37	1	62961314	62961314	+	Silent	SNP	A	A	T	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GGCT	79017	hgsc.bcm.edu	37	7	30538534	30538534	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GLT8D1	55830	hgsc.bcm.edu	37	3	52729443	52729443	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GOLM1	51280	hgsc.bcm.edu	37	9	88692459	88692459	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GPC5	2262	hgsc.bcm.edu	37	13	92345927	92345927	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GRB10	2887	hgsc.bcm.edu	37	7	50737542	50737542	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GREB1	9687	hgsc.bcm.edu	37	2	11706699	11706699	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HPSE2	60495	hgsc.bcm.edu	37	10	100904018	100904018	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ITGB7	3695	hgsc.bcm.edu	37	12	53594099	53594099	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KDM5C	8242	hgsc.bcm.edu	37	X	53246339	53246339	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LAMA2	3908	hgsc.bcm.edu	37	6	129588336	129588336	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LAPTM4A	9741	hgsc.bcm.edu	37	2	20237323	20237323	+	Silent	SNP	T	T	G	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LOXHD1	125336	hgsc.bcm.edu	37	18	44102253	44102253	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MICAL3	57553	hgsc.bcm.edu	37	22	18376628	18376628	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MSH2	4436	hgsc.bcm.edu	37	2	47707842	47707842	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MT1X	4501	hgsc.bcm.edu	37	16	56717111	56717111	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NLRP2	55655	hgsc.bcm.edu	37	19	55489137	55489137	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NLRP9	338321	hgsc.bcm.edu	37	19	56243988	56243988	+	Silent	SNP	A	A	T	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NT5DC3	51559	hgsc.bcm.edu	37	12	104179176	104179176	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PDGFRA	5156	hgsc.bcm.edu	37	4	55131181	55131181	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRTG	283659	hgsc.bcm.edu	37	15	55964783	55964783	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RFPL2	10739	hgsc.bcm.edu	37	22	32589043	32589043	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RPS6KB1	6198	hgsc.bcm.edu	37	17	58022845	58022845	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SAMD4A	23034	hgsc.bcm.edu	37	14	55218223	55218223	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SFRS15	57466	hgsc.bcm.edu	37	21	33074137	33074137	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLCO1B1	10599	hgsc.bcm.edu	37	12	21329830	21329830	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TAF15	8148	hgsc.bcm.edu	37	17	34171703	34171726	+	In_Frame_Del	DEL	GAGGAGGCGGCTATGGAGGAGACC	GAGGAGGCGGCTATGGAGGAGACC	-	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	GAGGAGGCGGCTATGGAGGAGACC	GAGGAGGCGGCTATGGAGGAGACC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TCOF1	6949	hgsc.bcm.edu	37	5	149776385	149776387	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	AGA	AGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRAF6	7189	hgsc.bcm.edu	37	11	36514141	36514141	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRPC4AP	26133	hgsc.bcm.edu	37	20	33595391	33595391	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VCAN	1462	hgsc.bcm.edu	37	5	82835015	82835015	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZBTB7C	201501	hgsc.bcm.edu	37	18	45567044	45567044	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZCCHC14	23174	hgsc.bcm.edu	37	16	87493727	87493727	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF449	203523	hgsc.bcm.edu	37	X	134483227	134483227	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5467-01	TCGA-CZ-5467-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
