Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACVR1B	91	hgsc.bcm.edu	37	12	52385715	52385715	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARHGEF37	389337	hgsc.bcm.edu	37	5	149006800	149006800	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BAP1	8314	hgsc.bcm.edu	37	3	52441261	52441261	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BRAF	673	hgsc.bcm.edu	37	7	140481395	140481395	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CASKIN2	57513	hgsc.bcm.edu	37	17	73500959	73500959	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDC25A	993	hgsc.bcm.edu	37	3	48215854	48215854	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DCDC5	196296	hgsc.bcm.edu	37	11	30921891	30921891	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DCST2	127579	hgsc.bcm.edu	37	1	155002622	155002622	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EIF2B1	1967	hgsc.bcm.edu	37	12	124116921	124116921	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EIF2B1	1967	hgsc.bcm.edu	37	12	124116922	124116922	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM83D	81610	hgsc.bcm.edu	37	20	37580235	37580235	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM90A1	55138	hgsc.bcm.edu	37	12	8374781	8374782	+	In_Frame_Ins	INS	-	-	ACG	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FLYWCH1	84256	hgsc.bcm.edu	37	16	2983245	2983245	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GON4L	54856	hgsc.bcm.edu	37	1	155764938	155764938	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GON4L	54856	hgsc.bcm.edu	37	1	155764940	155764940	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HMCN1	83872	hgsc.bcm.edu	37	1	185892580	185892580	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HSPG2	3339	hgsc.bcm.edu	37	1	22222714	22222714	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIAA0513	9764	hgsc.bcm.edu	37	16	85120766	85120766	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIAA2022	340533	hgsc.bcm.edu	37	X	73963362	73963362	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KLRF1	51348	hgsc.bcm.edu	37	12	9985930	9985930	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRTAP15-1	254950	hgsc.bcm.edu	37	21	31812784	31812784	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MED15	51586	hgsc.bcm.edu	37	22	20929497	20929497	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MYBPC1	4604	hgsc.bcm.edu	37	12	102057262	102057262	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NANOG	79923	hgsc.bcm.edu	37	12	7947298	7947298	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NCOA2	10499	hgsc.bcm.edu	37	8	71069284	71069284	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NHSL2	340527	hgsc.bcm.edu	37	X	71358471	71358471	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OCA2	4948	hgsc.bcm.edu	37	15	28267703	28267703	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR2C1	4993	hgsc.bcm.edu	37	16	3406081	3406081	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PREX1	57580	hgsc.bcm.edu	37	20	47244458	47244458	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRKCQ	5588	hgsc.bcm.edu	37	10	6521089	6521089	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RELN	5649	hgsc.bcm.edu	37	7	103234213	103234213	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RIMBP2	23504	hgsc.bcm.edu	37	12	130941167	130941167	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SCAF1	58506	hgsc.bcm.edu	37	19	50154270	50154271	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SNAP91	9892	hgsc.bcm.edu	37	6	84302945	84302945	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SRPK2	6733	hgsc.bcm.edu	37	7	104844182	104844182	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
STAU2	27067	hgsc.bcm.edu	37	8	74440017	74440017	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
THRAP3	9967	hgsc.bcm.edu	37	1	36755253	36755253	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TXNDC6	347736	hgsc.bcm.edu	37	3	138023808	138023808	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZBBX	79740	hgsc.bcm.edu	37	3	167000169	167000169	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF649	65251	hgsc.bcm.edu	37	19	52394722	52394722	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5469-01	TCGA-CZ-5469-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
