Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
UBE4B	10277	genome.wustl.edu	37	1	10166449	10166449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105562.1	+1	reviewed	p.V335A	0.999	110	0%	138	29%	0	-	unknown(0)	deleterious(0.05)	-	NULL
C1orf127	148345	genome.wustl.edu	37	1	11008706	11008706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377008	-1	known	p.R329W	0.000	65	0%	76	26.3%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
SPEN	23013	genome.wustl.edu	37	1	16260726	16260726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015001.2	+1	reviewed	p.P2664L	0.963	68	0%	103	28.2%	8	37.5%	unknown(0)	deleterious(0)	-	NULL
CROCC	9696	genome.wustl.edu	37	1	17275003	17275003	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014675.3	+1	validated	p.E898*	1.000	20	0%	19	31.6%	3	0%	-	-	-	NULL
C1QC	714	genome.wustl.edu	37	1	22973824	22973824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114101.1	+1	reviewed	p.P96T	0.752	112	0%	96	31.2%	51	0%	benign(0.15)	tolerated(0.09)	neutral(0.309)	HMMPfam_Collagen
UBXN11	91544	genome.wustl.edu	37	1	26609197	26609197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183008.2	-1	reviewed	p.L412P	0.017	170	0.6%	210	31.4%	78	46.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Ubiquitin-like
ARID1A	8289	genome.wustl.edu	37	1	27057919	27057919	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.Q543*	1.000	510	0.2%	593	35.6%	5	20%	-	-	-	NULL
KIAA0754	643314	genome.wustl.edu	37	1	39879411	39879411	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015038.1	+1	predicted	p.S1158	0.002	34	0%	63	28.6%	0	-	-	-	-	NULL
SCMH1	22955	genome.wustl.edu	37	1	41494275	41494275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031694.2	-1	validated	p.A613V	1.000	68	0%	76	28.9%	51	35.2%	benign(0.153)	tolerated(0.22)	neutral(0.056)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
DMBX1	127343	genome.wustl.edu	37	1	46978132	46978132	+	Missense_Mutation	SNP	C	C	T	rs181379491	by1000genomes	TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147192.2	+1	reviewed	p.A372V	0.995	11	0%	29	31%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OAR
STIL	6491	genome.wustl.edu	37	1	47755160	47755160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048166.1	-1	reviewed	p.P324T	0.000	108	0%	114	17.5%	1	0%	benign(0.027)	tolerated(0.05)	neutral(0.347)	NULL
SH3GLB1	51100	genome.wustl.edu	37	1	87181535	87181535	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016009.3	+1	validated	p.L67F	1.000	77	0%	84	33.3%	34	35.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BAR,HMMSmart_SM00721
MTMR11	10903	genome.wustl.edu	37	1	149901206	149901206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181873.3	-1	validated	p.G577S	0.976	232	0%	446	20.2%	13	23%	benign(0.023)	tolerated(0.15)	neutral(0.242)	NULL
LCE1B	353132	genome.wustl.edu	37	1	152785259	152785259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178349.1	+1	validated	p.H113Y	0.976	77	0%	187	17.1%	0	-	unknown(0)	-	-	NULL
GATAD2B	57459	genome.wustl.edu	37	1	153788766	153788767	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020699.2	-1	validated	p.S400fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ARHGEF11	9826	genome.wustl.edu	37	1	156941579	156941579	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198236.1	-1	reviewed	p.P204	0.122	149	0%	349	19.5%	2	0%	-	-	-	NULL
ETV3	2117	genome.wustl.edu	37	1	157095156	157095156	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145312.1	-1	validated	p.S339*	0.791	125	0%	246	21.5%	6	33.3%	-	-	-	NULL
ATF6	22926	genome.wustl.edu	37	1	161751785	161751785	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007348.2	+1	validated	p.C81	0.837	220	0.5%	413	21.5%	21	23.8%	-	-	-	NULL
ADCY10	55811	genome.wustl.edu	37	1	167805660	167805660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018417.4	-1	reviewed	p.I1066V	0.007	167	0%	319	19.1%	0	-	benign(0.01)	tolerated(0.77)	neutral(0.002)	NULL
GORAB	92344	genome.wustl.edu	37	1	170521409	170521409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152281.2	+1	reviewed	p.R331C	0.000	150	0%	371	22.1%	10	30%	benign(0.043)	deleterious(0.05)	neutral(0.348)	NULL
KLHL20	27252	genome.wustl.edu	37	1	173702998	173702998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014458.3	+1	reviewed	p.V57A	1.000	251	0%	625	21.4%	5	20%	benign(0)	tolerated(1)	-	superfamily_POZ domain
TNN	63923	genome.wustl.edu	37	1	175066648	175066648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022093.1	+1	validated	p.V562M	0.907	120	0%	220	13.2%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ANGPTL1	9068	genome.wustl.edu	37	1	178834480	178834480	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004673.3	-1	reviewed	p.K144	1.000	228	0%	486	59.3%	3	33.3%	-	-	-	NULL
ABL2	27	genome.wustl.edu	37	1	179087847	179087847	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007314.3	-1	reviewed	p.Y366	0.986	191	0%	438	17.8%	4	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
LHX4	89884	genome.wustl.edu	37	1	180241030	180241030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033343.2	+1	reviewed	p.R223C	1.000	192	0%	434	21.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TPR	7175	genome.wustl.edu	37	1	186329097	186329097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003292.2	-1	reviewed	p.Q408R	1.000	234	0%	475	20.6%	7	14.2%	possibly_damaging(0.916)	tolerated(0.47)	neutral(0.378)	NULL
KIF14	9928	genome.wustl.edu	37	1	200573062	200573062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014875.2	-1	validated	p.E590K	1.000	223	0%	494	15%	0	-	probably_damaging(0.954)	tolerated(0.15)	deleterious(0.639)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
PPFIA4	8497	genome.wustl.edu	37	1	203023240	203023241	+	Frame_Shift_Ins	INS	-	-	GC	rs10635298	byCluster;by1000genomes	TCGA-D1-A17A-01	TCGA-D1-A17A-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447715	+1	known	p.P584fs	0.005:0.000	-	-	-	-	-	-	-	-	-	NULL
HHIPL2	79802	genome.wustl.edu	37	1	222705345	222705345	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024746.3	-1	validated	p.H562	0.850	233	0%	573	19.2%	0	-	-	-	-	superfamily_Quino_gluc_DH
DNAH14	127602	genome.wustl.edu	37	1	225268286	225268286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001373.1	+1	validated	p.D991G	0.999	195	0%	351	19.1%	0	-	possibly_damaging(0.553)	deleterious(0.03)	deleterious(0.553)	HMMPfam_DHC_N2
OBSCN	84033	genome.wustl.edu	37	1	228474642	228474642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.R3149Q	0.000	30	0%	89	20.2%	0	-	possibly_damaging(0.781)	tolerated(0.61)	neutral(0.296)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
EGLN1	54583	genome.wustl.edu	37	1	231503381	231503381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022051.2	-1	reviewed	p.Y384H	1.000	237	0.4%	581	20.5%	47	19.1%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702
KIAA1383	54627	genome.wustl.edu	37	1	232942711	232942711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019090.2	+1	validated	p.R648C	0.995	53	0%	107	15.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GNG4	2786	genome.wustl.edu	37	1	235715440	235715440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098721.1	-1	validated	p.R66H	1.000	185	0%	433	18.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Transducin (heterotrimeric G protein) gamma chain
FMN2	56776	genome.wustl.edu	37	1	240370309	240370309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020066.4	+1	validated	p.V733I	0.000	78	0%	200	17%	0	-	unknown(0)	tolerated(0.51)	-	NULL
ZNF238	10472	genome.wustl.edu	37	1	244217659	244217659	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205768.2	+1	validated	p.R195*	1.000	74	0%	136	19.1%	12	58.3%	-	-	-	NULL
RRM2	6241	genome.wustl.edu	37	2	10262812	10262812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000360566	+1	known	p.A23T	0.000	60	0%	50	18%	0	-	benign(0.003)	-	-	NULL
FAM59B	150946	genome.wustl.edu	37	2	26407195	26407195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380681	+1	known	p.L273M	1.000	28	0%	65	38.5%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
OTOF	9381	genome.wustl.edu	37	2	26739428	26739428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194248.2	-1	reviewed	p.G123C	0.987	73	0%	105	32.4%	0	-	possibly_damaging(0.948)	deleterious(0.02)	deleterious(0.774)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
BIRC6	57448	genome.wustl.edu	37	2	32640933	32640933	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016252.3	+1	reviewed	p.S858	0.999	37	0%	50	28%	1	0%	-	-	-	NULL
STRN	6801	genome.wustl.edu	37	2	37193439	37193439	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003162.2	-1	validated	p.L56	1.000	11	0%	11	63.6%	0	-	-	-	-	HMMPfam_Striatin
ZFP36L2	678	genome.wustl.edu	37	2	43452828	43452829	+	Frame_Shift_Ins	INS	-	-	CGTCC	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006887.4	-1	reviewed	p.P38fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Tis11B_N
STAMBP	10617	genome.wustl.edu	37	2	74074753	74074753	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006463.3	+1	reviewed	p.L205	0.830	235	0%	301	32.9%	54	44.4%	-	-	-	NULL
IGKV1-8	28942	genome.wustl.edu	37	2	89292362	89292362	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000495489	-1	known	p.L12	0.998	360	0%	412	29.9%	0	-	-	-	-	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97911110	97911110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000461153	+1	known	p.S1399G	0.329	400	0%	463	16.4%	1	0%	benign(0.009)	deleterious(0)	neutral(0.445)	NULL
EIF5B	9669	genome.wustl.edu	37	2	99985889	99985889	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015904.3	+1	reviewed	p.E474D	0.464	281	0%	270	35.9%	103	44.6%	possibly_damaging(0.791)	tolerated(0.12)	deleterious(0.557)	NULL
ENSG00000152117	0	genome.wustl.edu	37	2	132258753	132258753	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416745	+1	known	NULL	1.000	149	0%	138	26.8%	0	-	-	-	-	-
GPR39	2863	genome.wustl.edu	37	2	133402852	133402852	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001508.2	+1	validated	p.T345	1.000	150	0%	182	31.3%	24	62.5%	-	-	-	superfamily_Family A G protein-coupled receptor-like
RIF1	55183	genome.wustl.edu	37	2	152320461	152320461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018151.4	+1	reviewed	p.E1476G	0.996	23	0%	41	22%	2	50%	benign(0.001)	tolerated(0.14)	neutral(0.249)	superfamily_ARM repeat
DYNC1I2	1781	genome.wustl.edu	37	2	172584350	172584350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001378.1	+1	provisional	p.T339I	1.000	281	0%	352	30.7%	28	39.2%	benign(0.005)	deleterious(0.04)	neutral(0.349)	HMMSmart_SM00320,superfamily_WD40 repeat-like
ANKAR	150709	genome.wustl.edu	37	2	190541625	190541625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144708.3	+1	validated	p.A66S	1.000	207	0%	214	21%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ankyrin repeat
PGAP1	80055	genome.wustl.edu	37	2	197709253	197709253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024989.3	-1	validated	p.P778S	0.205	30	0%	25	40%	1	100%	benign(0.016)	tolerated(0.57)	neutral(0.007)	NULL
BMPR2	659	genome.wustl.edu	37	2	203420981	203420981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001204.6	+1	reviewed	p.D865N	1.000	157	0%	219	27.9%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PECR	55825	genome.wustl.edu	37	2	216904016	216904016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018441.5	-1	validated	p.K298N	0.001	263	0%	281	30.2%	16	50%	unknown(0)	deleterious(0)	-	NULL
HDLBP	3069	genome.wustl.edu	37	2	242194546	242194546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005336.3	-1	validated	p.A370T	0.997	313	0%	345	29%	128	39.8%	benign(0)	tolerated(0.47)	neutral(0.011)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
FARP2	9855	genome.wustl.edu	37	2	242381014	242381014	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413432	+1	known	p.C172fs	0.054	-	-	-	-	-	-	-	-	-	NULL
SCN10A	6336	genome.wustl.edu	37	3	38753913	38753913	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006514.2	-1	validated	p.G1276	0.626	126	0%	159	29.6%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
BSN	8927	genome.wustl.edu	37	3	49691964	49691964	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003458.3	+1	reviewed	p.R1659	0.971	122	0%	194	27.3%	0	-	-	-	-	NULL
MUSTN1	389125	genome.wustl.edu	37	3	52867764	52867764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205853.2	-1	validated	p.A4V	0.997	149	0%	189	28.6%	8	12.5%	probably_damaging(0.959)	tolerated(0.12)	deleterious(0.663)	NULL
SUCLG2	8801	genome.wustl.edu	37	3	67546346	67546346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003848.3	-1	reviewed	p.A313V	1.000	173	0%	245	28.6%	25	48%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ligase_CoA,superfamily_CoA_ligase,PatternScan_SUCCINYL_COA_LIG_3
B4GALT4	8702	genome.wustl.edu	37	3	118931503	118931503	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003778.3	-1	reviewed	p.R310*	1.000	153	0%	220	11.8%	34	0%	-	-	-	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
CHST2	9435	genome.wustl.edu	37	3	142840774	142840774	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004267.3	+1	validated	p.A372	0.041	26	0%	38	39.5%	68	38.2%	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
P2RY1	5028	genome.wustl.edu	37	3	152554110	152554110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002563.2	+1	reviewed	p.V180A	1.000	336	0%	443	28.9%	0	-	benign(0.001)	tolerated(0.39)	neutral(0.016)	HMMPfam_7tm_1,superfamily_SSF81321
SLC7A14	57709	genome.wustl.edu	37	3	170201117	170201117	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020949.2	-1	validated	p.D367	1.000	99	0%	131	24.4%	0	-	-	-	-	HMMPfam_AA_permease
NLGN1	22871	genome.wustl.edu	37	3	173997312	173997312	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014932.2	+1	reviewed	p.D507	1.000	77	0%	116	28.4%	0	-	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
PIK3CA	5290	genome.wustl.edu	37	3	178936095	178936095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.Q546R	1.000	146	0%	159	27%	9	11.1%	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
WDR1	9948	genome.wustl.edu	37	4	10079466	10079466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017491.3	-1	reviewed	p.D494N	0.998	62	0%	72	36.1%	262	38.1%	possibly_damaging(0.623)	tolerated(0.16)	neutral(0.276)	HMMSmart_SM00320,superfamily_WD40 repeat-like
PAICS	10606	genome.wustl.edu	37	4	57319885	57319885	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079525.1	+1	reviewed	p.W364G	1.000	256	0%	329	33.7%	83	46.9%	benign(0.221)	tolerated(0.48)	neutral(0.033)	HMMPfam_AIRC,superfamily_N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase PurE)
SRP72	6731	genome.wustl.edu	37	4	57356749	57356749	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006947.3	+1	validated	p.D480	1.000	127	0%	164	26.8%	49	40.8%	-	-	-	superfamily_SSF48452
BMP2K	55589	genome.wustl.edu	37	4	79747214	79747214	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198892.1	+1	reviewed	p.V68L	1.000	213	0%	276	34.4%	1	0%	possibly_damaging(0.887)	deleterious(0.04)	deleterious(0.696)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RAP1GDS1	5910	genome.wustl.edu	37	4	99355205	99355205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100426.1	+1	validated	p.L521S	1.000	163	0%	206	32%	18	44.4%	benign(0.181)	tolerated(0.17)	neutral(0.075)	superfamily_ARM repeat
TET2	54790	genome.wustl.edu	37	4	106155403	106155404	+	Frame_Shift_Del	DEL	TC	TC	-	rs112510990		TCGA-D1-A17A-01	TCGA-D1-A17A-01	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127208.1	+1	validated	p.S104fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CAST	831	genome.wustl.edu	37	5	96073629	96073629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001750.5	+1	reviewed	p.T259M	0.045	208	0%	199	27.6%	33	27.2%	probably_damaging(0.98)	tolerated(0.08)	deleterious(0.724)	HMMPfam_Calpain_inhib
PCDHB15	56121	genome.wustl.edu	37	5	140626784	140626784	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018935.2	+1	reviewed	p.L546	0.682	83	0%	97	40.2%	4	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
KIF4B	285643	genome.wustl.edu	37	5	154394962	154394962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099293.1	+1	provisional	p.H515Y	1.000	95	0%	123	35%	0	-	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	NULL
RMND5B	64777	genome.wustl.edu	37	5	177574768	177574768	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022762.3	+1	provisional	p.S334	0.006	228	0%	384	37%	42	28.5%	-	-	-	superfamily_RING/U-box
RREB1	6239	genome.wustl.edu	37	6	7231900	7231900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003699.3	+1	reviewed	p.T1190A	1.000	35	0%	35	20%	4	50%	possibly_damaging(0.882)	tolerated(0.52)	neutral(0.353)	NULL
DSP	1832	genome.wustl.edu	37	6	7568701	7568701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004415.2	+1	reviewed	p.R433H	1.000	194	0%	214	27.1%	8	37.5%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	superfamily_Spectrin repeat
ZNF193	7746	genome.wustl.edu	37	6	28195035	28195035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006299.3	+1	provisional	p.L58P	0.304	125	0%	158	31.6%	5	60%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_SCAN,HMMSmart_SM00431
ZBTB12	221527	genome.wustl.edu	37	6	31868022	31868022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181842.2	-1	validated	p.A354V	0.996	89	0%	105	33.3%	16	25%	benign(0.079)	tolerated(0.09)	neutral(0.302)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MCM3	4172	genome.wustl.edu	37	6	52131452	52131452	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002388.3	-1	reviewed	p.Y705	1.000	224	0%	260	28.8%	52	42.3%	-	-	-	NULL
TRAM2	9697	genome.wustl.edu	37	6	52368020	52368020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012288.3	-1	reviewed	p.R363Q	1.000	303	0%	313	27.5%	1	100%	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	NULL
PRDM13	59336	genome.wustl.edu	37	6	100056633	100056633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021620.3	+1	validated	p.G54E	1.000	85	0%	86	25.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SET
MICAL1	64780	genome.wustl.edu	37	6	109774991	109774991	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022765.3	-1	validated	p.L106	1.000	73	0%	79	38%	2	0%	-	-	-	HMMPfam_FAD_binding_3,superfamily_FAD/NAD(P)-binding domain
ENPP3	5169	genome.wustl.edu	37	6	131962630	131962630	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005021.3	+1	reviewed	p.G38	0.446	284	0%	320	29.7%	230	47.8%	-	-	-	NULL
THBS2	7058	genome.wustl.edu	37	6	169623486	169623486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003247.2	-1	reviewed	p.A953V	1.000	142	0%	196	32.7%	3	0%	possibly_damaging(0.848)	tolerated(0.28)	neutral(0.357)	superfamily_SSF103647
CHST12	55501	genome.wustl.edu	37	7	2472865	2472865	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018641.3	+1	validated	p.R197	0.189	18	0%	30	30%	20	25%	-	-	-	HMMPfam_Sulfotransfer_2
NPSR1	387129	genome.wustl.edu	37	7	34851396	34851396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000381544	+1	known	p.R99C	0.930	357	0%	477	29.4%	0	-	unknown(0)	-	-	NULL
GRM3	2913	genome.wustl.edu	37	7	86416163	86416163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000840.2	+1	reviewed	p.R352L	0.985	91	0%	132	37.9%	0	-	possibly_damaging(0.531)	tolerated(0.17)	neutral(0.238)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
LRWD1	222229	genome.wustl.edu	37	7	102106430	102106430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152892.1	+1	provisional	p.D83N	0.948	68	0%	114	29.8%	45	55.5%	probably_damaging(0.993)	tolerated(0.14)	deleterious(0.700)	superfamily_SSF52058
ATXN7L1	222255	genome.wustl.edu	37	7	105254802	105254804	+	In_Frame_Del	DEL	GAG	GAG	-	rs150182467	by1000genomes	TCGA-D1-A17A-01	TCGA-D1-A17A-01	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020725.1	-1	validated	p.S661in_frame_del	0.098:0.098:0.097	-	-	-	-	-	-	-	-	-	NULL
SLC35G5	83650	genome.wustl.edu	37	8	11188688	11188688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054028.1	+1	reviewed	p.L25F	0.166	327	0%	378	31.7%	0	-	possibly_damaging(0.945)	tolerated(0.1)	deleterious(0.676)	NULL
UNC5D	137970	genome.wustl.edu	37	8	35406998	35406998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080872.2	+1	validated	p.V98I	0.636	89	0%	114	37.7%	0	-	benign(0.001)	tolerated(0.28)	neutral(0.032)	superfamily_Immunoglobulin
GPR124	25960	genome.wustl.edu	37	8	37687496	37687496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032777.8	+1	validated	p.A228T	0.482	31	0%	46	19.6%	11	0%	possibly_damaging(0.818)	tolerated(0.23)	neutral(0.350)	HMMSmart_SM00082,superfamily_L domain-like
MRPL15	29088	genome.wustl.edu	37	8	55049192	55049192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014175.3	+1	reviewed	p.R77Q	0.432	88	0%	114	28.1%	70	54.2%	possibly_damaging(0.551)	tolerated(0.23)	neutral(0.229)	HMMPfam_Ribosomal_L15,superfamily_SSF52080
C8orf34	116328	genome.wustl.edu	37	8	69552714	69552714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052958.1	+1	predicted	p.K292N	1.000	133	0%	151	33.1%	4	0%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
FAM83A	84985	genome.wustl.edu	37	8	124206356	124206356	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032899.4	+1	validated	p.S247	0.005	288	0.7%	305	31.1%	0	-	-	-	-	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease
PSCA	8000	genome.wustl.edu	37	8	143763382	143763382	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005672.4	+1	reviewed	p.L68	0.001	63	0%	74	32.4%	5	80%	-	-	-	HMMPfam_UPAR_LY6,HMMSmart_SM00134,superfamily_Snake toxin-like
TOP1MT	116447	genome.wustl.edu	37	8	144392279	144392279	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052963.1	-1	reviewed	p.T554	0.010	179	0%	192	35.4%	26	61.5%	-	-	-	superfamily_DNA_brk_join_enz,HMMSmart_TOPEUc,PatternScan_TOPOISOMERASE_I_EUK
C8orf73	642475	genome.wustl.edu	37	8	144650010	144650010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100878.1	-1	validated	p.G605C	1.000	85	0%	86	34.9%	28	35.7%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	superfamily_ARM-type_fold
PUF60	22827	genome.wustl.edu	37	8	144899617	144899617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078480.1	-1	reviewed	p.A343V	1.000	32	0%	43	30.2%	105	42.8%	probably_damaging(0.988)	tolerated(0.1)	deleterious(0.724)	NULL
SLC39A4	55630	genome.wustl.edu	37	8	145640383	145640383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130849.2	-1	reviewed	p.S260N	0.001	44	0%	56	23.2%	6	0%	benign(0.001)	tolerated(1)	-	NULL
RFX3	5991	genome.wustl.edu	37	9	3248069	3248069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134428.1	-1	reviewed	p.Q644R	1.000	168	0%	191	28.8%	12	58.3%	benign(0.104)	tolerated(0.09)	neutral(0.304)	NULL
INSL6	11172	genome.wustl.edu	37	9	5185551	5185551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007179.2	-1	reviewed	p.R18W	0.000	35	0%	44	25%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_Insulin-like
WNK2	65268	genome.wustl.edu	37	9	96030927	96030927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006648.3	+1	reviewed	p.R1311K	1.000	98	0%	123	26.8%	14	42.8%	possibly_damaging(0.855)	tolerated(0.07)	deleterious(0.649)	NULL
COL15A1	1306	genome.wustl.edu	37	9	101748083	101748083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001855.3	+1	reviewed	p.A113T	0.995	96	0%	110	29.1%	18	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_LamG,HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
ZNF462	58499	genome.wustl.edu	37	9	109691850	109691850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021224.4	+1	validated	p.R1886H	1.000	163	0%	213	31.5%	0	-	benign(0.031)	tolerated(0.05)	neutral(0.347)	superfamily_beta-sandwich domain of Sec23/24
TRIM32	22954	genome.wustl.edu	37	9	119461052	119461052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099679.1	+1	reviewed	p.R344Q	1.000	88	0%	80	36.2%	9	55.5%	possibly_damaging(0.656)	tolerated(0.26)	neutral(0.265)	NULL
DNM1	1759	genome.wustl.edu	37	9	130981011	130981011	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004408.2	+1	reviewed	e3+1	1.000	44	0%	41	39%	0	-	-	-	-	-
GOLGA2	2801	genome.wustl.edu	37	9	131019783	131019783	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004486.4	-1	reviewed	p.E887*	1.000	235	0%	287	34.5%	19	10.5%	-	-	-	NULL
SETX	23064	genome.wustl.edu	37	9	135205517	135205517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015046.5	-1	reviewed	p.V490I	0.989	112	0%	171	28.7%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TRDMT1	1787	genome.wustl.edu	37	10	17196680	17196680	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004412.5	-1	reviewed	p.V314A	1.000	192	0%	248	33.5%	1	100%	benign(0.124)	tolerated(0.44)	neutral(0.022)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
LOC645954	645954	genome.wustl.edu	37	10	30982471	30982471	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_017086.3	+1	model	NULL	1.000	92	1.1%	121	19.8%	0	-	-	-	-	-
ZNF25	219749	genome.wustl.edu	37	10	38241061	38241061	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145011.2	-1	provisional	p.E455	0.002	189	0%	215	27.4%	0	-	-	-	-	NULL
C10orf71	118461	genome.wustl.edu	37	10	50533701	50533701	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135196.1	+1	validated	p.S1037	0.027	53	0%	63	15.9%	0	-	-	-	-	NULL
PCDH15	65217	genome.wustl.edu	37	10	55973783	55973783	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142763.1	-1	reviewed	p.F342	1.000	138	0%	145	29.7%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
USP54	159195	genome.wustl.edu	37	10	75305336	75305336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152586.3	-1	provisional	p.R112H	1.000	180	0%	270	10.7%	4	50%	benign(0.01)	deleterious(0)	neutral(0.445)	superfamily_Cysteine proteinases
RGR	5995	genome.wustl.edu	37	10	86017664	86017664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002921.3	+1	reviewed	p.P220S	1.000	158	0.6%	229	31%	0	-	probably_damaging(1)	tolerated(0.81)	deleterious(0.500)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PTEN	5728	genome.wustl.edu	37	10	89717672	89717672	+	Nonsense_Mutation	SNP	C	C	T	rs121909219	byCluster	TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R233*	0.984	255	0%	297	29.3%	44	15.9%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
UBTD1	80019	genome.wustl.edu	37	10	99329914	99329914	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024954.3	+1	provisional	p.Y106	0.979	16	0%	32	46.9%	47	53.1%	-	-	-	NULL
SORCS1	114815	genome.wustl.edu	37	10	108371764	108371764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013031.1	-1	reviewed	p.R980C	1.000	206	0%	250	32.4%	0	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
C10orf90	118611	genome.wustl.edu	37	10	128193440	128193440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004298.2	-1	validated	p.P110L	0.000	68	0%	73	38.4%	0	-	benign(0.005)	tolerated(1)	-	NULL
TH	7054	genome.wustl.edu	37	11	2185588	2185588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199292.2	-1	reviewed	p.V488M	0.999	86	0%	100	38%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Biopterin_H,superfamily_Aromatic aminoacid monoxygenases catalytic and oligomerization domains
RHOG	391	genome.wustl.edu	37	11	3848954	3848954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001665.3	-1	validated	p.P139S	0.926	64	0%	106	32.1%	111	31.5%	benign(0.001)	tolerated(0.31)	neutral(0.027)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
OR52K1	390036	genome.wustl.edu	37	11	4510457	4510457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005171.2	+1	validated	p.F109L	0.479	207	0%	324	31.5%	0	-	possibly_damaging(0.47)	tolerated(0.33)	neutral(0.179)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR10A2	341276	genome.wustl.edu	37	11	6891832	6891832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004460.1	+1	provisional	p.E283K	0.999	81	0%	143	34.3%	0	-	possibly_damaging(0.697)	deleterious(0)	deleterious(0.695)	superfamily_SSF81321
KCNC1	3746	genome.wustl.edu	37	11	17757888	17757888	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112741.1	+1	reviewed	p.R113	0.984	22	0%	26	42.3%	0	-	-	-	-	superfamily_POZ domain
TMEM138	51524	genome.wustl.edu	37	11	61135511	61135511	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451389	+1	known	p.T139	0.000	109	0%	184	26.6%	2	50%	-	-	-	NULL
SLC22A12	116085	genome.wustl.edu	37	11	64367308	64367308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144585.2	+1	reviewed	p.A411T	0.000	20	0%	28	32.1%	0	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
EHBP1L1	254102	genome.wustl.edu	37	11	65346593	65346593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099409.1	+1	validated	p.R50H	1.000	73	0%	91	35.2%	24	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZDHHC24	254359	genome.wustl.edu	37	11	66311324	66311324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207340.1	-1	provisional	p.R137Q	1.000	39	0%	53	34%	54	40.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-DHHC
SHANK2	22941	genome.wustl.edu	37	11	70336399	70336399	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012309.3	-1	reviewed	p.R250*	1.000	214	0%	263	33.1%	1	0%	-	-	-	NULL
GAB2	9846	genome.wustl.edu	37	11	77937537	77937537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080491.2	-1	reviewed	p.A394V	1.000	558	0%	678	28.9%	1	0%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
FAT3	120114	genome.wustl.edu	37	11	92565052	92565052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.T3249I	1.000	160	0%	253	24.9%	0	-	benign(0.037)	tolerated(0.56)	neutral(0.009)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
ARHGAP42	143872	genome.wustl.edu	37	11	100784255	100784255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152432.2	+1	provisional	p.A153T	1.000	40	0%	37	21.6%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
MMP10	4319	genome.wustl.edu	37	11	102647384	102647384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002425.2	-1	reviewed	p.R249H	0.995	263	0%	329	32.2%	13	15.3%	benign(0.001)	tolerated(0.62)	neutral(0.004)	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
PPP2R1B	5519	genome.wustl.edu	37	11	111608179	111608179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181699.2	-1	reviewed	p.M635T	0.013	148	0%	162	26.5%	4	25%	benign(0)	tolerated(1)	-	NULL
PPP2R1B	5519	genome.wustl.edu	37	11	111636973	111636973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181699.2	-1	reviewed	p.Q38R	1.000	162	0%	155	26.5%	8	25%	possibly_damaging(0.576)	tolerated(0.24)	neutral(0.235)	superfamily_ARM-type_fold
MCAM	4162	genome.wustl.edu	37	11	119185693	119185693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006500.2	-1	validated	p.E84K	0.003	34	0%	57	21.1%	30	0%	benign(0.062)	tolerated(0.06)	neutral(0.327)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
OR10S1	219873	genome.wustl.edu	37	11	123847741	123847741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004474.1	-1	provisional	p.V220M	0.072	78	0%	97	35.1%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CDON	50937	genome.wustl.edu	37	11	125888230	125888230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016952.4	-1	validated	p.V212A	1.000	241	0.4%	326	31%	1	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_Immunoglobulin
AKAP3	10566	genome.wustl.edu	37	12	4736445	4736445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006422.2	-1	reviewed	p.Q541H	1.000	91	0%	126	34.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_AKAP_110,HMMSmart_SM00807
C1RL	51279	genome.wustl.edu	37	12	7249070	7249070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016546.2	-1	validated	p.G461W	0.985	131	0%	176	34.7%	48	37.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	byCluster	TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033360.2	-1	reviewed	p.G12D	1.000	343	0.3%	393	30.5%	3	66.6%	possibly_damaging(0.886)	deleterious(0)	deleterious(0.791)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
KCNH3	23416	genome.wustl.edu	37	12	49943891	49943891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012284.1	+1	validated	p.R566H	0.999	39	0%	34	35.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_cNMP_binding
TSFM	10102	genome.wustl.edu	37	12	58190347	58190347	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005726.5	+1	reviewed	p.E320A	0.893	155	0%	230	32.2%	78	41%	unknown(0)	tolerated(0.06)	-	NULL
CTDSP2	10106	genome.wustl.edu	37	12	58217771	58217771	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005730.3	-1	validated	p.D202	1.000	80	0%	89	39.3%	36	19.4%	-	-	-	HMMPfam_NIF,HMMSmart_SM00577,superfamily_HAD-like
MDM2	4193	genome.wustl.edu	37	12	69233373	69233373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002392.3	+1	reviewed	p.S413N	1.000	131	0%	171	33.9%	25	56%	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	NULL
CCT2	10576	genome.wustl.edu	37	12	69980553	69980553	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006431.2	+1	reviewed	p.I33	0.974	157	0%	140	27.1%	48	37.5%	-	-	-	superfamily_GroEL equatorial domain-like
KCNC2	3747	genome.wustl.edu	37	12	75442063	75442063	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139137.2	-1	reviewed	p.P550	1.000	380	0%	474	29.3%	0	-	-	-	-	NULL
LOC100287749	100287749	genome.wustl.edu	37	12	109889345	109889345	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343211.1	+1	model	p.C91	0.000	173	0.6%	204	31.9%	8	12.5%	-	-	-	NULL
BRAP	8315	genome.wustl.edu	37	12	112103457	112103457	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006768.3	-1	reviewed	p.R294	1.000	126	0%	227	35.2%	7	42.8%	-	-	-	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
NOS1	4842	genome.wustl.edu	37	12	117665447	117665447	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000620.2	-1	reviewed	e22-1	1.000	129	0%	157	36.3%	0	-	-	-	-	-
CLIP1	6249	genome.wustl.edu	37	12	122825809	122825809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002956.2	-1	validated	p.G637W	1.000	314	0%	396	26.3%	18	38.8%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
MPHOSPH9	10198	genome.wustl.edu	37	12	123679113	123679113	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022782.2	-1	validated	p.S535	1.000	226	0%	258	28.3%	2	50%	-	-	-	NULL
DNAH10	196385	genome.wustl.edu	37	12	124417928	124417928	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.P4331	0.001	50	2%	47	25.5%	4	75%	-	-	-	HMMPfam_Dynein_heavy
PROZ	8858	genome.wustl.edu	37	13	113826130	113826130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003891.1	+1	provisional	p.R305H	0.000	49	0%	55	14.5%	1	100%	benign(0.003)	tolerated(0.08)	neutral(0.300)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
MYH7	4625	genome.wustl.edu	37	14	23896494	23896494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000257.2	-1	reviewed	p.K637N	0.649	88	0%	113	26.5%	0	-	benign(0.013)	deleterious(0.03)	neutral(0.365)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
NUBPL	80224	genome.wustl.edu	37	14	32295834	32295834	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025152.2	+1	validated	e8-1	1.000	161	0%	216	29.2%	0	-	-	-	-	-
LRFN5	145581	genome.wustl.edu	37	14	42356745	42356745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152447.3	+1	validated	p.L306P	1.000	235	0%	249	11.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
FSCB	84075	genome.wustl.edu	37	14	44974511	44974511	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032135.3	-1	validated	p.Q560H	0.000	33	0%	35	20%	0	-	unknown(0)	tolerated(0.09)	-	NULL
NIPA2	81614	genome.wustl.edu	37	15	23006735	23006735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008860.2	-1	reviewed	p.A190V	1.000	88	0%	119	29.4%	27	29.6%	benign(0.077)	deleterious(0)	neutral(0.450)	HMMPfam_DUF803
LOC728310	728310	genome.wustl.edu	37	15	29088506	29088523	+	RNA	DEL	CTCCTGATCCCGTAGCTC	CTCCTGATCCCGTAGCTC	-	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	CTCCTGATCCCGTAGCTC	CTCCTGATCCCGTAGCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078490.1	-1	model	NULL	0.220:0.284:0.294:0.271:0.220:0.227:0.201:0.214:0.229:0.214:0.212:0.219:0.322:0.587:0.890:0.940:0.965:0.985	-	-	-	-	-	-	-	-	-	-
TTBK2	146057	genome.wustl.edu	37	15	43069417	43069417	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173500.3	-1	reviewed	p.S407	0.997	140	0%	176	29%	2	0%	-	-	-	NULL
CSK	1445	genome.wustl.edu	37	15	75091753	75091753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127190.1	+1	validated	p.H128R	1.000	40	0%	57	22.8%	69	42%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
FAM174B	400451	genome.wustl.edu	37	15	93173572	93173572	+	Silent	SNP	C	C	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207446.2	-1	validated	p.S116	0.006	302	0%	424	35.1%	14	50%	-	-	-	HMMPfam_DUF1180
PCSK6	5046	genome.wustl.edu	37	15	101910712	101910712	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000331826	-1	known	p.Q516*	0.864	54	0%	84	39.3%	1	0%	-	-	-	superfamily_Galactose-binding domain-like
AMDHD2	51005	genome.wustl.edu	37	16	2578480	2578480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015944.3	+1	validated	p.P297H	0.998	23	0%	44	34.1%	20	55%	benign(0.386)	tolerated(0.24)	neutral(0.161)	superfamily_Metalo_hydrolase,superfamily_SSF51556
NAGPA	51172	genome.wustl.edu	37	16	5075682	5075682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016256.2	-1	reviewed	p.A449T	0.920	63	0%	93	30.1%	14	21.4%	benign(0)	tolerated(1)	-	NULL
C16orf72	29035	genome.wustl.edu	37	16	9185957	9185957	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014117.2	+1	validated	p.H19R	1.000	63	0%	44	22.7%	12	41.6%	possibly_damaging(0.512)	tolerated(0.18)	neutral(0.228)	NULL
TNRC6A	27327	genome.wustl.edu	37	16	24788441	24788441	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014494.2	+1	reviewed	p.P117	0.006	36	0%	54	33.3%	0	-	-	-	-	NULL
LOC100289169	100289169	genome.wustl.edu	37	16	29063641	29063641	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343436.1	+1	model	p.P81	0.195	40	0%	51	29.4%	0	-	-	-	-	HMMPfam_NPIP
NUP93	9688	genome.wustl.edu	37	16	56864491	56864491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014669.3	+1	validated	p.R327C	1.000	183	0%	299	34.4%	16	56.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nic96
FUK	197258	genome.wustl.edu	37	16	70497655	70497655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145059.2	+1	reviewed	p.L71P	1.000	52	0%	50	18%	11	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MBTPS1	8720	genome.wustl.edu	37	16	84132698	84132698	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003791.2	-1	reviewed	p.T127	0.015	342	0%	424	28.5%	22	36.3%	-	-	-	superfamily_Pept_S8_S53
KLHL36	79786	genome.wustl.edu	37	16	84690772	84690772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024731.2	+1	provisional	p.L120P	1.000	102	0%	150	34.7%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
TNFSF12	8742	genome.wustl.edu	37	17	7460647	7460647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003809.2	+1	reviewed	p.G244R	0.990	59	0%	56	35.7%	90	37.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TNF,HMMSmart_SM00207,superfamily_TNF-like
LOC100289291	100289291	genome.wustl.edu	37	17	11514810	11514810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343480.1	-1	model	p.Q81H	0.385	25	0%	16	31.2%	0	-	-	-	-	NULL
MYO1D	4642	genome.wustl.edu	37	17	31203812	31203812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015194.1	-1	provisional	p.A27T	1.000	43	0%	29	31%	1	0%	benign(0.043)	tolerated(0.13)	neutral(0.255)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF830	91603	genome.wustl.edu	37	17	33288789	33288789	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052857.3	+1	validated	p.T68	1.000	138	0%	185	24.3%	9	88.8%	-	-	-	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1
STAT5B	6777	genome.wustl.edu	37	17	40354415	40354415	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012448.3	-1	reviewed	p.D727G	1.000	124	0%	135	10.4%	40	17.5%	benign(0.025)	tolerated(0.13)	neutral(0.254)	NULL
CACNA1G	8913	genome.wustl.edu	37	17	48697144	48697166	+	Frame_Shift_Del	DEL	CTGCCTTCCCTTCTGCCCCCAGC	CTGCCTTCCCTTCTGCCCCCAGC	-	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	CTGCCTTCCCTTCTGCCCCCAGC	CTGCCTTCCCTTCTGCCCCCAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018896.3	+1	validated	p.A1962fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:0.999:0.998:0.962:0.981:0.992:0.992:0.994:0.997:0.983:0.995:0.999:1.000	-	-	-	-	-	-	-	-	-	NULL
CA10	56934	genome.wustl.edu	37	17	49731057	49731057	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082533.1	-1	reviewed	p.V169D	1.000	177	0.6%	212	28.3%	0	-	possibly_damaging(0.458)	deleterious(0)	deleterious(0.595)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
ACE	1636	genome.wustl.edu	37	17	61566372	61566372	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000789.2	+1	reviewed	p.R840	0.000	110	0%	127	31.5%	12	25%	-	-	-	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
QRICH2	84074	genome.wustl.edu	37	17	74271928	74271928	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032134.1	-1	provisional	p.S1652	0.071	161	0%	174	30.5%	9	22.2%	unknown(0)	deleterious(0)	-	NULL
TK1	7083	genome.wustl.edu	37	17	76171144	76171144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003258.4	-1	validated	p.G167D	1.000	55	0%	95	10.5%	22	4.5%	possibly_damaging(0.951)	tolerated(0.1)	deleterious(0.680)	HMMPfam_TK
RPTOR	57521	genome.wustl.edu	37	17	78921118	78921118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020761.2	+1	reviewed	p.G1078S	1.000	115	0%	123	23.6%	5	40%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMSmart_SM00320,superfamily_WD40 repeat-like
DSG4	147409	genome.wustl.edu	37	18	28991147	28991147	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134453.1	+1	reviewed	p.A716	0.000	216	0%	294	37.1%	0	-	-	-	-	NULL
PIAS2	9063	genome.wustl.edu	37	18	44409714	44409714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004671.2	-1	validated	p.P440L	0.494	254	0%	355	29.6%	6	83.3%	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
KATNAL2	83473	genome.wustl.edu	37	18	44625628	44625628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031303.2	+1	validated	p.A337V	1.000	111	0%	140	40%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
SMAD7	4092	genome.wustl.edu	37	18	46447954	46447954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005904.2	-1	provisional	p.V357I	1.000	199	0%	262	22.9%	8	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MH2,HMMSmart_DWB,superfamily_SMAD_FHA
SERPINB13	5275	genome.wustl.edu	37	18	61259600	61259600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012397.3	+1	validated	p.V82I	0.845	181	0.6%	172	26.2%	0	-	benign(0.003)	tolerated(0.62)	neutral(0.004)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
FBXO15	201456	genome.wustl.edu	37	18	71807496	71807496	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142958.1	-1	reviewed	p.H56	0.005	106	0%	106	31.1%	2	0%	-	-	-	NULL
CNDP2	55748	genome.wustl.edu	37	18	72178113	72178113	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018235.2	+1	validated	p.D174	0.965	272	0.4%	325	27.7%	246	48.3%	-	-	-	HMMPfam_Peptidase_M20,superfamily_SSF53187
GAMT	2593	genome.wustl.edu	37	19	1399885	1399885	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138924.1	-1	reviewed	p.V78	0.987	49	0%	56	39.3%	44	40.9%	-	-	-	superfamily_SSF53335
LOC55908	55908	genome.wustl.edu	37	19	11350343	11350343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018687.6	+1	validated	p.W63C	0.010	41	0%	59	40.7%	0	-	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
LOC100287986	100287986	genome.wustl.edu	37	19	15695367	15695367	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343618.1	-1	model	p.G488R	0.930	16	0%	21	33.3%	1	0%	-	-	-	NULL
CYP4F12	66002	genome.wustl.edu	37	19	15794482	15794482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023944.2	+1	reviewed	p.R276H	0.127	112	0%	141	32.6%	1	0%	benign(0.015)	tolerated(0.13)	neutral(0.253)	HMMPfam_p450,superfamily_Cytochrome P450
LOC388514	388514	genome.wustl.edu	37	19	15871165	15871165	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_017598.3	-1	model	NULL	0.999	10	0%	20	40%	0	-	-	-	-	-
ELL	8178	genome.wustl.edu	37	19	18561593	18561593	+	Silent	SNP	G	G	T	rs35245196	byCluster;byFrequency	TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006532.3	-1	validated	p.R387	0.000	42	0%	47	27.7%	5	60%	-	-	-	NULL
GATAD2A	54815	genome.wustl.edu	37	19	19576203	19576203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017660.3	+1	provisional	p.R17W	0.646	203	0%	269	36.1%	12	50%	probably_damaging(0.985)	deleterious(0.03)	deleterious(0.796)	NULL
ZNF429	353088	genome.wustl.edu	37	19	21688578	21688578	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001415.2	+1	provisional	e1+2	0.080	133	0%	118	27.1%	0	-	-	-	-	-
ZNF599	148103	genome.wustl.edu	37	19	35251044	35251044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007248.2	-1	validated	p.H221R	1.000	143	0%	218	16.1%	0	-	benign(0.145)	deleterious(0)	neutral(0.457)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MLL4	9757	genome.wustl.edu	37	19	36227689	36227689	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.S2420R	1.000	184	0%	270	28.1%	24	50%	possibly_damaging(0.847)	-	-	HMMPfam_FYRC,HMMSmart_SM00542
NPHS1	4868	genome.wustl.edu	37	19	36340451	36340451	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004646.3	-1	reviewed	e6+1	1.000	103	0%	127	27.6%	0	-	-	-	-	-
CYP2B7P1	1556	genome.wustl.edu	37	19	41442352	41442352	+	RNA	SNP	C	C	A	rs3745219	byCluster;byFrequency	TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_001278.1	+1	provisional	NULL	0.859	370	0%	450	30%	0	-	-	-	-	-
MEGF8	1954	genome.wustl.edu	37	19	42838352	42838352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001410.2	+1	validated	p.G182D	1.000	17	0%	23	34.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_EGF,HMMPfam_EGF_2
CEACAM16	388551	genome.wustl.edu	37	19	45209134	45209134	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039213.2	+1	validated	p.L371	0.338	156	0%	215	28.8%	0	-	-	-	-	NULL
EXOC3L2	90332	genome.wustl.edu	37	19	45731255	45731255	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138568.3	-1	validated	p.G90	0.231	76	0%	107	27.1%	4	0%	-	-	-	HMMPfam_Sec6
C5AR1	728	genome.wustl.edu	37	19	47823977	47823977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001736.3	+1	validated	p.L315I	0.466	97	0%	123	35.8%	4	25%	possibly_damaging(0.52)	tolerated(0.16)	neutral(0.234)	superfamily_Family A G protein-coupled receptor-like
KLK5	25818	genome.wustl.edu	37	19	51453255	51453255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077491.1	-1	reviewed	p.S64N	0.006	73	0%	96	33.3%	0	-	benign(0.196)	tolerated(0.12)	neutral(0.279)	superfamily_Trypsin-like serine proteases
ZNF701	55762	genome.wustl.edu	37	19	53085611	53085611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018260.2	+1	validated	p.Q100R	0.000	119	0%	153	29.4%	0	-	probably_damaging(0.998)	tolerated(0.34)	deleterious(0.497)	NULL
ZNF814	730051	genome.wustl.edu	37	19	58386142	58386142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144989.1	-1	validated	p.P206T	0.000	210	0%	306	36.3%	3	0%	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
ZNF418	147686	genome.wustl.edu	37	19	58438971	58438971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133460.1	-1	provisional	p.E193G	0.000	156	0%	216	35.2%	2	0%	benign(0.001)	tolerated(1)	-	NULL
ZNF324B	388569	genome.wustl.edu	37	19	58966424	58966424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000391696	+1	known	p.P28H	0.001	9	0.000	20	0.350	0	-	unknown(0)	-	-	NULL
TMX4	56255	genome.wustl.edu	37	20	7967973	7967973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021156.2	-1	provisional	p.V193I	0.024	256	0%	215	31.6%	24	50%	benign(0.157)	tolerated(0.07)	neutral(0.333)	NULL
THBD	7056	genome.wustl.edu	37	20	23029302	23029302	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000361.2	-1	reviewed	p.C280	0.345	25	0%	22	36.4%	6	0%	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
CST2	1470	genome.wustl.edu	37	20	23807136	23807136	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001322.2	-1	reviewed	p.E54	0.025	249	0%	264	30.3%	2	0%	-	-	-	HMMPfam_Cystatin,HMMSmart_CY,superfamily_SSF54403
GDF5	8200	genome.wustl.edu	37	20	34022222	34022222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000557.2	-1	reviewed	p.R331C	0.976	25	0%	35	42.9%	8	62.5%	possibly_damaging(0.755)	deleterious(0)	deleterious(0.723)	HMMPfam_TGFb_propeptide
C20orf132	140699	genome.wustl.edu	37	20	35769657	35769657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400441	-1	known	p.T466A	0.992	356	0%	437	32.7%	1	100%	benign(0.031)	tolerated(0.34)	neutral(0.025)	superfamily_ARM repeat
KIAA1755	85449	genome.wustl.edu	37	20	36855589	36855589	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029864.1	-1	predicted	p.A673	0.000	108	0%	122	23%	1	0%	-	-	-	NULL
ARFGEF2	10564	genome.wustl.edu	37	20	47591335	47591335	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006420.2	+1	reviewed	p.C566	1.000	264	0%	362	28.7%	6	66.6%	-	-	-	superfamily_ARM-type_fold
UMODL1	89766	genome.wustl.edu	37	21	43549899	43549899	+	Missense_Mutation	SNP	G	G	A	rs188624715	by1000genomes	TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173568.3	+1	validated	p.R1384Q	0.055	209	0.5%	280	37.9%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
C21orf33	8209	genome.wustl.edu	37	21	45564807	45564807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004649.6	+1	reviewed	p.K261N	0.032	104	0%	135	41.5%	213	42.7%	benign(0)	tolerated(0.31)	neutral(0.027)	superfamily_Class I glutamine amidotransferase-like
LOC100288065	100288065	genome.wustl.edu	37	22	18064090	18064090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344192.1	-1	model	p.A235V	0.000	111	0%	138	32.6%	0	-	-	-	-	NULL
CCDC116	164592	genome.wustl.edu	37	22	21989099	21989099	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152612.2	+1	provisional	p.S249	0.001	41	0%	75	42.7%	0	-	-	-	-	NULL
TTC28	23331	genome.wustl.edu	37	22	28501666	28501667	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145418.1	-1	validated	p.L969fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
ELFN2	114794	genome.wustl.edu	37	22	37770696	37770696	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052906.3	-1	validated	p.A293	0.000	252	0%	367	30.2%	0	-	-	-	-	HMMSmart_FN3
TSPO	706	genome.wustl.edu	37	22	43558925	43558925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007311.3	+1	reviewed	p.H53Y	0.078	38	0%	33	21.2%	294	33.3%	unknown(0)	-	-	NULL
CELSR1	9620	genome.wustl.edu	37	22	46929884	46929884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014246.1	-1	reviewed	p.L1062M	1.000	125	0%	147	30.6%	11	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CELSR1	9620	genome.wustl.edu	37	22	46930182	46930182	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454637	-1	known	p.P337L	0.821	65	1.5%	116	28.4%	5	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ASB9	140462	genome.wustl.edu	37	X	15262645	15262645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031739.2	-1	reviewed	p.F290L	0.970	291	0%	394	28.4%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SOCS_box
YY2	404281	genome.wustl.edu	37	X	21875370	21875370	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206923.3	+1	reviewed	p.C256	0.004	73	0%	80	38.8%	1	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GK	2710	genome.wustl.edu	37	X	30739014	30739014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128127.1	+1	reviewed	p.A462V	1.000	213	0%	264	32.6%	7	0%	benign(0.195)	deleterious(0.04)	neutral(0.367)	HMMPfam_FGGY_C,superfamily_SSF53067
CHST7	56548	genome.wustl.edu	37	X	46434060	46434060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019886.2	+1	reviewed	p.V232M	0.089	66	0%	97	28.9%	1	0%	probably_damaging(0.962)	tolerated(0.18)	neutral(0.461)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
WDR45	11152	genome.wustl.edu	37	X	48932828	48932828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007075.3	-1	reviewed	p.R315C	0.999	74	0%	99	37.4%	203	0%	probably_damaging(0.962)	deleterious(0.05)	deleterious(0.750)	superfamily_WD40_like
CXorf67	340602	genome.wustl.edu	37	X	51150586	51150586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000342995	+1	known	p.A240T	0.000	17	0%	18	50%	0	-	probably_damaging(0.994)	tolerated(0.68)	neutral(0.454)	NULL
SSX7	280658	genome.wustl.edu	37	X	52682011	52682011	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173358.2	-1	reviewed	p.Y31*	0.038	547	0%	569	29.2%	0	-	-	-	-	HMMSmart_KRAB,superfamily_Krueppel-associated_box
USP51	158880	genome.wustl.edu	37	X	55513612	55513612	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201286.3	-1	validated	p.K587N	1.000	139	0%	210	35.2%	0	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMPfam_UCH,superfamily_SSF54001
MTMR8	55613	genome.wustl.edu	37	X	63565045	63565045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017677.3	-1	reviewed	p.A249T	1.000	375	0%	499	31.1%	6	100%	unknown(0)	tolerated(0.08)	-	HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II
AR	367	genome.wustl.edu	37	X	66765966	66765966	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000044.2	+1	reviewed	p.G326	0.119	40	0%	51	41.2%	0	-	-	-	-	HMMPfam_Androgen_recep
FAM155B	27112	genome.wustl.edu	37	X	68749609	68749609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015686.2	+1	validated	p.R410H	0.002	555	0%	702	32.5%	3	0%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
AWAT2	158835	genome.wustl.edu	37	X	69263813	69263813	+	Missense_Mutation	SNP	C	C	T	rs180949354	by1000genomes	TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002254.1	-1	reviewed	p.R77H	0.004	108	0.9%	124	30.6%	0	-	possibly_damaging(0.643)	tolerated(0.11)	deleterious(0.497)	HMMPfam_DAGAT
TAF1	6872	genome.wustl.edu	37	X	70614068	70614068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004606.3	+1	reviewed	p.R1147W	1.000	282	0%	404	32.4%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RBMXL3	139804	genome.wustl.edu	37	X	114426349	114426349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145346.1	+1	validated	p.Y782C	0.899	61	0%	62	29%	0	-	possibly_damaging(0.88)	deleterious(0)	deleterious(0.788)	NULL
AKAP14	158798	genome.wustl.edu	37	X	119048782	119048782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178813.5	+1	reviewed	p.V128I	0.008	215	0%	256	35.5%	3	33.3%	possibly_damaging(0.936)	tolerated(1)	neutral(0.382)	NULL
PNCK	139728	genome.wustl.edu	37	X	152937461	152937461	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17A-01	TCGA-D1-A17A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039582.3	-1	validated	p.G179	0.029	55	0%	91	34.1%	1	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
