Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AAK1	22848	genome.wustl.edu	37	2	69870081	69870081	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	69870081	69870081	C	T	SNP	AAK1	NM_014911	human	genbank	57_37b	-1	reviewed	missense	c.92	p.G31D	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
ADARB1	104	genome.wustl.edu	37	21	46596033	46596033	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	46596033	46596033	G	A	SNP	ADARB1	NM_015833	human	genbank	57_37b	+1	validated	silent	c.417	p.L139	1.000	superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358	superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358,HMMSmart_SM00552,HMMPfam_A_deamin,superfamily_Cytokine	-	no_errors	
ALKBH5	54890	genome.wustl.edu	37	17	18088015	18088015	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18088015	18088015	A	G	SNP	ALKBH5	NM_017758	human	genbank	57_37b	+1	validated	missense	c.458	p.E153G	1.000	NULL	NULL	-	no_errors	
ANK3	288	genome.wustl.edu	37	10	61819102	61819102	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	61819102	61819102	C	T	SNP	ANK3	NM_020987	human	genbank	57_37b	-1	reviewed	missense	c.12682	p.D4228N	1.000	NULL	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,HMMPfam_ZU5,HMMSmart_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors	
ANP32E	81611	genome.wustl.edu	37	1	150204143	150204143	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150204143	150204143	C	T	SNP	ANP32E	NM_030920	human	genbank	57_37b	-1	validated	missense	c.176	p.R59Q	0.911	superfamily_L domain-like	superfamily_L domain-like,HMMPfam_LRR_1	-	no_errors	
ANPEP	290	genome.wustl.edu	37	15	90328653	90328653	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	90328653	90328653	G	A	SNP	ANPEP	NM_001150	human	genbank	57_37b	-1	reviewed	missense	c.2831	p.T944M	0.998	NULL	superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486,PatternScan_ZINC_PROTEASE	-	no_errors	
AUTS2	26053	genome.wustl.edu	37	7	70255691	70255691	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	70255691	70255691	G	A	SNP	AUTS2	NM_015570	human	genbank	57_37b	+1	validated	silent	c.3489	p.E1163	1.000	NULL	NULL	-	no_errors	
AZIN1	51582	genome.wustl.edu	37	8	103841546	103841546	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	103841546	103841546	C	T	SNP	AZIN1	NM_015878	human	genbank	57_37b	-1	reviewed	missense	c.1189	p.D397N	0.998	superfamily_Racem_decarbox_C,HMMPfam_Orn_DAP_Arg_deC	PatternScan_ODR_DC_2_1,HMMPfam_Orn_Arg_deC_N,superfamily_SSF51419,PatternScan_ODR_DC_2_2,superfamily_Racem_decarbox_C,HMMPfam_Orn_DAP_Arg_deC	-	no_errors	
BLK	640	genome.wustl.edu	37	8	11418950	11418950	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	11418950	11418950	C	T	SNP	BLK	NM_001715	human	genbank	57_37b	+1	validated	missense	c.1169	p.T390M	0.911	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP	-	no_errors	
C15orf52	388115	genome.wustl.edu	37	15	40627656	40627657	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	40627656	40627657	-	A	INS	C15orf52	NM_207380	human	genbank	57_37b	-1	validated	frame_shift_ins	c.1308_1307	p.C437fs	0.000:0.000	NULL	NULL	-	no_errors	
CD5L	922	genome.wustl.edu	37	1	157805906	157805906	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	157805906	157805906	C	T	SNP	CD5L	NM_005894	human	genbank	57_37b	-1	validated	missense	c.95	p.R32H	0.807	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1	-	no_errors	
CLDN10	9071	genome.wustl.edu	37	13	96086159	96086159	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	96086159	96086159	G	A	SNP	CLDN10	NM_182848	human	genbank	57_37b	+1	reviewed	silent	c.72	p.T24	0.002	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN	-	no_errors	
COPS3	8533	genome.wustl.edu	37	17	17163754	17163754	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	17163754	17163754	A	G	SNP	COPS3	NM_003653	human	genbank	57_37b	-1	reviewed	missense	c.797	p.V266A	1.000	HMMPfam_PCI	"HMMPfam_PCI,HMMSmart_SM00088,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors	
CRB2	286204	genome.wustl.edu	37	9	126125420	126125420	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	126125420	126125420	G	A	SNP	CRB2	NM_173689	human	genbank	57_37b	+1	validated	missense	c.371	p.R124H	0.325	PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors	
CXorf57	55086	genome.wustl.edu	37	X	105855830	105855830	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	105855830	105855830	C	T	SNP	CXorf57	NM_018015	human	genbank	57_37b	+1	validated	nonsense	c.520	p.Q174*	0.000	NULL	superfamily_Nucleic acid-binding proteins	-	no_errors	
DAOA	267012	genome.wustl.edu	37	13	106142353	106142353	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	106142353	106142353	A	G	SNP	DAOA	NM_172370	human	genbank	57_37b	+1	reviewed	missense	c.385	p.M129V	0.005	NULL	NULL	-	no_errors	
DLG3	1741	genome.wustl.edu	37	X	69717042	69717042	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	69717042	69717042	C	A	SNP	DLG3	NM_020730	human	genbank	57_37b	+1	reviewed	missense	c.875	p.S292Y	1.000	superfamily_SH3-domain	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,HMMPfam_Gua_kin_assoc_C	-	no_errors	
DOCK9	23348	genome.wustl.edu	37	13	99461377	99461377	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	99461377	99461377	C	T	SNP	DOCK9	ENST00000357329	human	ensembl	57_37b	-1	known	silent	c.5376	p.A1792	1.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ded_cyto	-	no_errors	
ENSG00000247884	0	genome.wustl.edu	37	9	95475767	95475767	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	95475767	95475767	G	A	SNP	ENSG00000247884	ENST00000500056	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.046	-	-	-	no_errors	
FAM166A	401565	genome.wustl.edu	37	9	140142146	140142147	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140142146	140142147	-	G	INS	FAM166A	NM_001001710	human	genbank	57_37b	-1	predicted	frame_shift_ins	c.22_21	p.D7fs	0.001:0.162	NULL	HMMPfam_DUF2475	-	no_errors	
FCHO2	115548	genome.wustl.edu	37	5	72330517	72330517	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	72330517	72330517	G	T	SNP	FCHO2	NM_138782	human	genbank	57_37b	+1	validated	missense	c.830	p.S277I	1.000	NULL	HMMPfam_FCH,HMMSmart_SM00055,HMMPfam_SAFF	-	no_errors	
FER1L5	90342	genome.wustl.edu	37	2	97313550	97313550	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	97313550	97313550	T	A	SNP	FER1L5	NM_001113382	human	genbank	57_37b	+1	provisional	nonsense	c.266	p.L89*	0.455	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerI,HMMPfam_FerB,HMMSmart_SM00693,HMMSmart_SM00694	-	no_errors	
FKBP15	23307	genome.wustl.edu	37	9	115964882	115964882	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	115964882	115964882	A	G	SNP	FKBP15	NM_015258	human	genbank	57_37b	-1	validated	missense	c.427	p.Y143H	1.000	superfamily_FKBP-like	superfamily_FKBP-like,HMMPfam_FKBP_C	-	no_errors	
FRMD4B	23150	genome.wustl.edu	37	3	69244205	69244205	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	69244205	69244205	T	G	SNP	FRMD4B	NM_015123	human	genbank	57_37b	-1	validated	missense	c.1456	p.K486Q	1.000	NULL	superfamily_Ubiquitin-like,HMMSmart_SM00295,HMMPfam_FERM_N,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C	-	no_errors	
GK2	2712	genome.wustl.edu	37	4	80327945	80327945	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	80327945	80327945	G	A	SNP	GK2	NM_033214	human	genbank	57_37b	-1	validated	silent	c.1410	p.S470	0.000	superfamily_SSF53067,HMMPfam_FGGY_C	superfamily_SSF53067,HMMPfam_FGGY_N,PatternScan_FGGY_KINASES_1,HMMPfam_FGGY_C,PatternScan_FGGY_KINASES_2	-	no_errors	
GPR126	57211	genome.wustl.edu	37	6	142711398	142711398	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	142711398	142711398	G	A	SNP	GPR126	NM_198569	human	genbank	57_37b	+1	reviewed	missense	c.1226	p.G409E	1.000	NULL	superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB,superfamily_ConA_like_lec_gl,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,superfamily_SSF81321,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
GPR162	27239	genome.wustl.edu	37	12	6936007	6936007	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6936007	6936007	G	A	SNP	GPR162	NM_019858	human	genbank	57_37b	+1	reviewed	missense	c.1405	p.E469K	0.089	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors	
GRIN2A	2903	genome.wustl.edu	37	16	9934570	9934570	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	9934570	9934570	C	A	SNP	GRIN2A	NM_000833	human	genbank	57_37b	-1	reviewed	missense	c.1585	p.V529L	1.000	superfamily_Periplasmic binding protein-like II,HMMSmart_SM00079	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like II,HMMSmart_SM00079,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,HMMPfam_NMDAR2_C	-	no_errors	
GRIPAP1	56850	genome.wustl.edu	37	X	48831588	48831588	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48831588	48831588	G	A	SNP	GRIPAP1	NM_020137	human	genbank	57_37b	-1	reviewed	silent	c.2412	p.T804	1.000	NULL	superfamily_Prefoldin	-	no_errors	
GRM4	2914	genome.wustl.edu	37	6	34004103	34004103	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	34004103	34004103	G	A	SNP	GRM4	NM_000841	human	genbank	57_37b	-1	reviewed	missense	c.1784	p.A595V	1.000	HMMPfam_7tm_3	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors	
GRM6	2916	genome.wustl.edu	37	5	178410025	178410025	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	178410025	178410025	G	A	SNP	GRM6	NM_000843	human	genbank	57_37b	-1	reviewed	silent	c.2322	p.G774	0.001	HMMPfam_7tm_3	superfamily_SSF53822,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors	
HELT	391723	genome.wustl.edu	37	4	185940105	185940105	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	185940105	185940105	G	T	SNP	HELT	NM_001029887	human	genbank	57_37b	+1	inferred	missense	c.23	p.R8L	1.000	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_Hairy_orange	-	no_errors	
HS2ST1	9653	genome.wustl.edu	37	1	87380793	87380793	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	87380793	87380793	T	G	SNP	HS2ST1	NM_012262	human	genbank	57_37b	+1	reviewed	missense	c.74	p.L25R	1.000	HMMPfam_HS2ST	HMMPfam_HS2ST,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
IRS4	8471	genome.wustl.edu	37	X	107978764	107978764	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	107978764	107978764	C	T	SNP	IRS4	NM_003604	human	genbank	57_37b	-1	reviewed	missense	c.811	p.E271K	1.000	superfamily_SSF50729,HMMPfam_IRS,HMMSmart_PTBI	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI	-	no_errors	
ITPR1	3708	genome.wustl.edu	37	3	4699856	4699856	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	4699856	4699856	G	T	SNP	ITPR1	NM_001099952	human	genbank	57_37b	+1	reviewed	nonsense	c.1045	p.E349*	1.000	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472	HMMPfam_Ins145_P3_rec,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR,superfamily_IP3 receptor type 1 binding core domain 2,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans	-	no_errors	
KCNK13	56659	genome.wustl.edu	37	14	90650490	90650490	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	90650490	90650490	A	T	SNP	KCNK13	NM_022054	human	genbank	57_37b	+1	reviewed	nonsense	c.370	p.K124*	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2	-	no_errors	
KIAA2022	340533	genome.wustl.edu	37	X	73964215	73964215	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	73964215	73964215	C	T	SNP	KIAA2022	NM_001008537	human	genbank	57_37b	-1	validated	missense	c.177	p.M59I	0.025	NULL	NULL	-	no_errors	
KNDC1	85442	genome.wustl.edu	37	10	135020748	135020748	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	135020748	135020748	C	T	SNP	KNDC1	NM_152643	human	genbank	57_37b	+1	validated	silent	c.3687	p.S1229	0.999	superfamily_Ras GEF	HMMSmart_SM00750,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF	-	no_errors	
KRT18	3875	genome.wustl.edu	37	12	53344579	53344579	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53344579	53344579	C	A	SNP	KRT18	NM_000224	human	genbank	57_37b	+1	reviewed	silent	c.546	p.I182	0.970	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors	
KRT76	51350	genome.wustl.edu	37	12	53167402	53167402	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53167402	53167402	G	A	SNP	KRT76	NM_015848	human	genbank	57_37b	-1	reviewed	silent	c.840	p.R280	0.977	HMMPfam_Filament	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors	
LOC388514	388514	genome.wustl.edu	37	19	15872088	15872088	+	RNA	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15872088	15872088	C	T	SNP	LOC388514	XR_017598	human	genbank	57_37b	-1	model	rna	NULL	NULL	1.000	-	-	-	no_errors	
LOC401847	401847	genome.wustl.edu	37	16	33605741	33605741	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	33605741	33605741	G	C	SNP	LOC401847	XM_001718104	human	genbank	57_37b	+1	model	missense	c.410	p.G137A	0.001	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406	-	no_errors	
LOC440041	440041	genome.wustl.edu	37	11	55064990	55064990	+	RNA	SNP	G	G	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55064990	55064990	G	T	SNP	LOC440041	XR_016142	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.008	-	-	-	no_errors	
MAEL	84944	genome.wustl.edu	37	1	166974325	166974325	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	166974325	166974325	A	G	SNP	MAEL	NM_032858	human	genbank	57_37b	+1	validated	missense	c.661	p.T221A	0.999	NULL	HMMPfam_DUF1898,superfamily_HMG-box	-	no_errors	
MAGI2	9863	genome.wustl.edu	37	7	77789453	77789453	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	77789453	77789453	C	T	SNP	MAGI2	NM_012301	human	genbank	57_37b	-1	reviewed	missense	c.2734	p.A912T	0.974	superfamily_PDZ domain-like	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1	-	no_errors	
MAN2A1	4124	genome.wustl.edu	37	5	109091068	109091068	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	109091068	109091068	G	T	SNP	MAN2A1	NM_002372	human	genbank	57_37b	+1	reviewed	missense	c.746	p.G249V	1.000	superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38	superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38,superfamily_SSF88688,HMMPfam_Alpha-mann_mid,superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C	-	no_errors	
MCART6	401612	genome.wustl.edu	37	X	103349790	103349790	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	103349790	103349790	C	T	SNP	MCART6	NM_001012755	human	genbank	57_37b	-1	validated	missense	c.151	p.V51I	0.998	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors	
MFGE8	4240	genome.wustl.edu	37	15	89449997	89449997	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	89449997	89449997	G	A	SNP	MFGE8	NM_005928	human	genbank	57_37b	-1	validated	missense	c.400	p.R134W	1.000	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2	-	no_errors	
MLLT10	8028	genome.wustl.edu	37	10	22016847	22016847	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	22016847	22016847	C	T	SNP	MLLT10	NM_004641	human	genbank	57_37b	+1	validated	missense	c.2101	p.L701F	1.000	NULL	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors	
NACC1	112939	genome.wustl.edu	37	19	13248140	13248140	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	13248140	13248140	C	T	SNP	NACC1	NM_052876	human	genbank	57_37b	+1	validated	silent	c.1176	p.G392	1.000	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BEN	-	no_errors	
NCOA3	8202	genome.wustl.edu	37	20	46281213	46281213	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	46281213	46281213	C	T	SNP	NCOA3	NM_181659	human	genbank	57_37b	+1	reviewed	missense	c.4010	p.S1337L	0.990	HMMPfam_DUF1518	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_SRC-1,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_Nuc_rec_co-act,HMMPfam_DUF1518	-	no_errors	
NPAS3	64067	genome.wustl.edu	37	14	34269516	34269516	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	34269516	34269516	C	T	SNP	NPAS3	NM_173159	human	genbank	57_37b	+1	reviewed	missense	c.1964	p.P655L	1.000	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH,HMMPfam_PAS,HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC	-	no_errors	
NUDT10	170685	genome.wustl.edu	37	X	51076061	51076061	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	51076061	51076061	G	A	SNP	NUDT10	ENST00000356450	human	ensembl	57_37b	+1	known	missense	c.244	p.V82I	0.502	superfamily_Nudix,HMMPfam_NUDIX	superfamily_Nudix,HMMPfam_NUDIX,PatternScan_NUDIX	-	no_errors	
NUP107	57122	genome.wustl.edu	37	12	69082816	69082816	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	69082816	69082816	C	G	SNP	NUP107	NM_020401	human	genbank	57_37b	+1	reviewed	missense	c.83	p.A28G	1.000	NULL	HMMPfam_Nup84_Nup100	-	no_errors	
OBSCN	84033	genome.wustl.edu	37	1	228521466	228521466	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228521466	228521466	C	T	SNP	OBSCN	NM_001098623	human	genbank	57_37b	+1	reviewed	missense	c.16039	p.R5347W	1.000	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
OBSCN	84033	genome.wustl.edu	37	1	228537694	228537695	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228537694	228537695	-	T	INS	OBSCN	NM_001098623	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.18252_18253	p.Y6084fs	1.000:1.000	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
OR5AS1	219447	genome.wustl.edu	37	11	55798416	55798416	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55798416	55798416	C	T	SNP	OR5AS1	NM_001001921	human	genbank	57_37b	+1	provisional	silent	c.522	p.V174	0.014	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PDE1B	5153	genome.wustl.edu	37	12	54943667	54943667	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	54943667	54943667	C	T	SNP	PDE1B	NM_000924	human	genbank	57_37b	+1	validated	missense	c.11	p.S4F	1.000	NULL	HMMPfam_PDEase_I_N,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors	
PFKFB1	5207	genome.wustl.edu	37	X	54978380	54978380	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	54978380	54978380	G	A	SNP	PFKFB1	NM_002625	human	genbank	57_37b	-1	reviewed	silent	c.804	p.G268	1.000	HMMPfam_PGAM,superfamily_SSF53254	HMMPfam_6PF2K,superfamily_SSF52540,HMMPfam_PGAM,superfamily_SSF53254,PatternScan_PG_MUTASE	-	no_errors	
PHKA1	5255	genome.wustl.edu	37	X	71823050	71823050	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	71823050	71823050	G	A	SNP	PHKA1	NM_002637	human	genbank	57_37b	-1	reviewed	silent	c.2836	p.L946	1.000	HMMPfam_PHK_AB	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases	-	no_errors	
PLEKHG3	26030	genome.wustl.edu	37	14	65208367	65208367	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	65208367	65208367	C	T	SNP	PLEKHG3	NM_015549	human	genbank	57_37b	+1	validated	missense	c.1964	p.T655I	0.943	NULL	superfamily_DH-domain,HMMPfam_RhoGEF,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors	
PPAPDC1A	196051	genome.wustl.edu	37	10	122278379	122278379	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	122278379	122278379	C	A	SNP	PPAPDC1A	NM_001030059	human	genbank	57_37b	+1	validated	nonsense	c.291	p.C97*	1.000	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMSmart_SM00014,HMMPfam_PAP2	PatternScan_TUBULIN_B_AUTOREG,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMSmart_SM00014,HMMPfam_PAP2	-	no_errors	
PQLC2	54896	genome.wustl.edu	37	1	19653907	19653907	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19653907	19653907	G	A	SNP	PQLC2	NM_001040125	human	genbank	57_37b	+1	validated	splice_site	c.804+1	e6+1	0.998	-	-	-	no_errors	
PRAMEF11	440560	genome.wustl.edu	37	1	12887609	12887609	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	12887609	12887609	C	T	SNP	PRAMEF11	ENST00000331684	human	ensembl	57_37b	-1	known	missense	c.248	p.G83E	0.000	superfamily_SSF52047	superfamily_SSF52047	-	no_errors	
RAB30	27314	genome.wustl.edu	37	11	82708280	82708280	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	82708280	82708280	G	C	SNP	RAB30	NM_014488	human	genbank	57_37b	-1	provisional	missense	c.79	p.R27G	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors	
RAN	5901	genome.wustl.edu	37	12	131359172	131359172	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	131359172	131359172	G	-	DEL	RAN	NM_006325	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.329	p.R110fs	0.998	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176,PatternScan_RAN	(deletion:cds_exon[131359091,131359278])	no_errors	
RC3H2	54542	genome.wustl.edu	37	9	125621114	125621114	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	125621114	125621114	T	C	SNP	RC3H2	NM_001100588	human	genbank	57_37b	-1	validated	missense	c.2117	p.Y706C	1.000	NULL	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_CCCH zinc finger,HMMSmart_SM00356,HMMPfam_zf-CCCH	-	no_errors	
RGNEF	64283	genome.wustl.edu	37	5	73178396	73178396	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	73178396	73178396	A	G	SNP	RGNEF	NM_001080479	human	genbank	57_37b	+1	provisional	missense	c.2914	p.K972E	1.000	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,HMMPfam_PH,superfamily_PH domain-like,HMMSmart_SM00233	-	no_errors	
RP1	6101	genome.wustl.edu	37	8	55537248	55537248	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	55537248	55537248	C	T	SNP	RP1	NM_006269	human	genbank	57_37b	+1	reviewed	missense	c.806	p.S269L	0.988	NULL	superfamily_SSF89837,HMMSmart_DCX,HMMPfam_DCX	-	no_errors	
RYR1	6261	genome.wustl.edu	37	19	38993592	38993592	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38993592	38993592	C	T	SNP	RYR1	NM_000540	human	genbank	57_37b	+1	reviewed	silent	c.7908	p.F2636	0.988	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SEC13	6396	genome.wustl.edu	37	3	10354321	10354321	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	10354321	10354321	C	T	SNP	SEC13	NM_183352	human	genbank	57_37b	-1	reviewed	nonsense	c.258	p.W86*	1.000	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	PatternScan_WD_REPEATS_1,HMMSmart_WD40,HMMPfam_WD40,superfamily_WD40_like	-	no_errors	
SEC61A1	29927	genome.wustl.edu	37	3	127788327	127788327	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	127788327	127788327	C	T	SNP	SEC61A1	NM_013336	human	genbank	57_37b	+1	reviewed	missense	c.1253	p.P418L	1.000	superfamily_Preprotein translocase SecY subunit,HMMPfam_SecY	superfamily_Preprotein translocase SecY subunit,HMMPfam_Plug_translocon,PatternScan_SECY_1,HMMPfam_SecY,PatternScan_SECY_2	-	no_errors	
SFRS9	8683	genome.wustl.edu	37	12	120899883	120899883	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	120899883	120899883	C	T	SNP	SFRS9	NM_003769	human	genbank	57_37b	-1	validated	missense	c.605	p.R202H	1.000	superfamily_SSF54928	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors	
SGK269	79834	genome.wustl.edu	37	15	77474189	77474189	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	77474189	77474189	T	C	SNP	SGK269	NM_024776	human	genbank	57_37b	-1	validated	missense	c.80	p.H27R	1.000	NULL	PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
SIGLEC7	27036	genome.wustl.edu	37	19	51647840	51647840	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51647840	51647840	T	G	SNP	SIGLEC7	NM_014385	human	genbank	57_37b	+1	validated	missense	c.611	p.L204R	0.142	superfamily_Immunoglobulin,HMMPfam_C2-set_2,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig	-	no_errors	
SLC12A6	9990	genome.wustl.edu	37	15	34530451	34530451	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	34530451	34530451	G	C	SNP	SLC12A6	NM_133647	human	genbank	57_37b	-1	reviewed	missense	c.2784	p.F928L	1.000	NULL	HMMPfam_AA_permease,HMMPfam_KCl_Cotrans_1	-	no_errors	
SLC20A1	6574	genome.wustl.edu	37	2	113404906	113404906	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	113404906	113404906	G	T	SNP	SLC20A1	NM_005415	human	genbank	57_37b	+1	provisional	missense	c.340	p.A114S	1.000	HMMPfam_PHO4	HMMPfam_PHO4	-	no_errors	
SLC22A25	387601	genome.wustl.edu	37	11	62996956	62996956	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62996956	62996956	C	A	SNP	SLC22A25	NM_199352	human	genbank	57_37b	-1	validated	missense	c.169	p.D57Y	0.902	NULL	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors	
SLC26A9	115019	genome.wustl.edu	37	1	205897095	205897095	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	205897095	205897095	C	T	SNP	SLC26A9	NM_134325	human	genbank	57_37b	-1	reviewed	missense	c.1036	p.V346I	1.000	HMMPfam_Sulfate_transp	HMMPfam_Sulfate_transp,superfamily_STAS,HMMPfam_STAS	-	no_errors	
SLC35B2	347734	genome.wustl.edu	37	6	44224176	44224176	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	44224176	44224176	G	T	SNP	SLC35B2	NM_178148	human	genbank	57_37b	-1	validated	missense	c.263	p.A88D	0.983	NULL	HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE,PatternScan_COPPER_BLUE	-	no_errors	
SMARCA4	6597	genome.wustl.edu	37	19	11113752	11113752	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11113752	11113752	C	T	SNP	SMARCA4	NM_001128849	human	genbank	57_37b	+1	reviewed	silent	c.1860	p.I620	1.000	superfamily_SSF52540,HMMPfam_BRK,HMMSmart_BRK	HMMPfam_QLQ,superfamily_SSF52540,HMMPfam_HSA,HMMSmart_HSA,HMMPfam_BRK,HMMSmart_BRK,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
STAC2	342667	genome.wustl.edu	37	17	37371076	37371076	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37371076	37371076	G	T	SNP	STAC2	NM_198993	human	genbank	57_37b	-1	validated	missense	c.811	p.P271T	1.000	NULL	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors	
STARD9	57519	genome.wustl.edu	37	15	42984495	42984495	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42984495	42984495	G	A	SNP	STARD9	XM_001129482	human	genbank	57_37b	+1	model	silent	c.10461	p.T3487	0.000	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,superfamily_Bet v1-like	-	no_errors	
TIAM2	26230	genome.wustl.edu	37	6	155561720	155561720	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	155561720	155561720	C	T	SNP	TIAM2	NM_012454	human	genbank	57_37b	+1	reviewed	silent	c.3225	p.G1075	0.597	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00455,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1	-	no_errors	
TMTC4	84899	genome.wustl.edu	37	13	101278346	101278346	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	101278346	101278346	C	T	SNP	TMTC4	NM_032813	human	genbank	57_37b	-1	validated	missense	c.1565	p.R522K	0.967	superfamily_TPR-like,HMMPfam_TPR_2,HMMSmart_SM00028	HMMPfam_DUF1736,superfamily_TPR-like,HMMPfam_TPR_2,HMMSmart_SM00028,HMMPfam_TPR_1	-	no_errors	
TSGA13	114960	genome.wustl.edu	37	7	130357595	130357595	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	130357595	130357595	G	A	SNP	TSGA13	NM_052933	human	genbank	57_37b	-1	provisional	missense	c.509	p.S170F	0.002	NULL	NULL	-	no_errors	
TTC25	83538	genome.wustl.edu	37	17	40091945	40091945	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40091945	40091945	C	A	SNP	TTC25	ENST00000377543	human	ensembl	57_37b	+1	known	silent	c.340	p.R114	1.000	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1	-	no_errors	
ULK2	9706	genome.wustl.edu	37	17	19685246	19685246	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	19685246	19685246	C	T	SNP	ULK2	NM_001142610	human	genbank	57_37b	-1	reviewed	silent	c.2595	p.E865	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
VPS26A	9559	genome.wustl.edu	37	10	70892783	70892783	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	70892783	70892783	G	A	SNP	VPS26A	NM_004896	human	genbank	57_37b	+1	reviewed	missense	c.133	p.G45R	1.000	HMMPfam_Vps26	HMMPfam_Vps26	-	no_errors	
YARS2	51067	genome.wustl.edu	37	12	32908185	32908185	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	32908185	32908185	G	A	SNP	YARS2	NM_001040436	human	genbank	57_37b	-1	validated	silent	c.624	p.L208	0.006	superfamily_SSF52374,HMMPfam_tRNA-synt_1b	superfamily_SSF52374,HMMPfam_tRNA-synt_1b,PatternScan_AA_TRNA_LIGASE_I,superfamily_SSF55174	-	no_errors	
ZFR2	23217	genome.wustl.edu	37	19	3834981	3834981	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3834981	3834981	G	A	SNP	ZFR2	NM_015174	human	genbank	57_37b	-1	validated	silent	c.54	p.S18	0.314	NULL	HMMSmart_SM00451,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00572,HMMPfam_DZF	-	no_errors	
ZNF281	23528	genome.wustl.edu	37	1	200378223	200378223	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	200378223	200378223	T	A	SNP	ZNF281	NM_012482	human	genbank	57_37b	-1	provisional	missense	c.611	p.D204V	0.912	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF347	84671	genome.wustl.edu	37	19	53645625	53645625	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53645625	53645625	G	T	SNP	ZNF347	NM_032584	human	genbank	57_37b	-1	validated	nonsense	c.456	p.Y152*	0.006	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF75A	7627	genome.wustl.edu	37	16	3366955	3366955	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3366955	3366955	G	T	SNP	ZNF75A	NM_153028	human	genbank	57_37b	+1	validated	missense	c.144	p.E48D	1.000	superfamily_Krueppel-associated_box,HMMSmart_KRAB	HMMPfam_KRAB,superfamily_Krueppel-associated_box,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZP4	57829	genome.wustl.edu	37	1	238051691	238051691	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A140-01	TCGA-D8-A140-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	238051691	238051691	C	A	SNP	ZP4	NM_021186	human	genbank	57_37b	-1	reviewed	nonsense	c.520	p.E174*	0.000	superfamily_Trefoil,HMMSmart_SM00018,HMMPfam_Trefoil	superfamily_Trefoil,HMMSmart_SM00018,HMMPfam_Trefoil,PatternScan_P_TREFOIL,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1	-	no_errors	
