Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
AGRN	375790	genome.wustl.edu	37	1	986164	986164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198576.2	+1	validated	p.R1734C	0.988	27	0%	29	20.7%	61	13.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1
AGRN	375790	genome.wustl.edu	37	1	986190	986190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198576.2	+1	validated	p.D1742E	0.175	24	0%	20	45%	54	38.8%	benign(0.003)	tolerated(0.09)	neutral(0.296)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1
AGRN	375790	genome.wustl.edu	37	1	987133	987133	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000419249	+1	known	p.R166C	0.992	106	0.9%	111	45.9%	71	46.4%	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
DVL1	1855	genome.wustl.edu	37	1	1273682	1273682	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004421.2	-1	reviewed	p.Q467*	1.000	75	0%	69	17.4%	129	20.9%	-	-	-	HMMPfam_DEP,HMMSmart_DEP,superfamily_SSF46785
PLCH2	9651	genome.wustl.edu	37	1	2418745	2418745	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014638.2	+1	provisional	p.D348	1.000	137	0%	125	41.6%	2	0%	-	-	-	HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases
TP73	7161	genome.wustl.edu	37	1	3638591	3638591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005427.2	+1	reviewed	p.P146S	1.000	299	0%	238	33.6%	0	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	superfamily_p53-like transcription factors,HMMPfam_P53
SPSB1	80176	genome.wustl.edu	37	1	9416592	9416592	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025106.3	+1	validated	p.S214	0.998	249	0%	226	37.6%	11	45.4%	-	-	-	HMMPfam_SPRY,HMMSmart_SPRY
MFN2	9927	genome.wustl.edu	37	1	12056351	12056351	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127660.1	+1	reviewed	p.S151fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Dynamin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
KAZ	23254	genome.wustl.edu	37	1	15430590	15430590	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201628.2	+1	validated	p.A651	0.037	65	0%	52	19.2%	0	-	-	-	-	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
CASP9	842	genome.wustl.edu	37	1	15833559	15833559	+	Silent	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001229.2	-1	reviewed	p.L155	0.988	50	0%	48	27.1%	9	11.1%	-	-	-	HMMSmart_SM00115,superfamily_Caspase-like
SLC25A34	284723	genome.wustl.edu	37	1	16065836	16065836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207348.1	+1	provisional	p.L284I	1.000	47	0%	37	27%	0	-	possibly_damaging(0.804)	deleterious(0)	deleterious(0.747)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
TMEM82	388595	genome.wustl.edu	37	1	16069549	16069549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013641.1	+1	provisional	p.R66W	0.030	32	0%	59	20.3%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
NUDC	10726	genome.wustl.edu	37	1	27271945	27271945	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006600.2	+1	provisional	p.I269N	1.000	118	0%	110	39.1%	199	47.2%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
C1orf38	9473	genome.wustl.edu	37	1	28206388	28206388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105556.1	+1	validated	p.L157M	0.170	73	0%	97	20.6%	14	21.4%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
CSMD2	114784	genome.wustl.edu	37	1	34101980	34101980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052896.3	-1	validated	p.N1610S	0.990	49	0%	45	40%	0	-	benign(0.023)	tolerated(0.3)	neutral(0.030)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
OSCP1	127700	genome.wustl.edu	37	1	36887751	36887751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145047.4	-1	validated	p.Q283H	1.000	279	0%	256	26.6%	10	10%	benign(0.006)	tolerated(0.13)	neutral(0.253)	NULL
RRAGC	64121	genome.wustl.edu	37	1	39318045	39318045	+	Splice_Site	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022157.2	-1	provisional	e4+1	1.000	230	0%	122	15.6%	0	-	-	-	-	-
ZMYND12	84217	genome.wustl.edu	37	1	42915663	42915663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433602	-1	known	p.T7I	0.763	148	0%	149	20.1%	2	0%	unknown(0)	deleterious(0)	-	NULL
RNF220	55182	genome.wustl.edu	37	1	45111129	45111129	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018150.2	+1	validated	p.Q472*	1.000	188	0%	147	24.5%	51	13.7%	-	-	-	NULL
FAAH	2166	genome.wustl.edu	37	1	46874213	46874213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001441.2	+1	reviewed	p.A345V	0.999	146	0%	116	33.6%	14	21.4%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Amidase,superfamily_Amidase_sig_enz
GLIS1	148979	genome.wustl.edu	37	1	53986418	53986418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147193.2	-1	validated	p.E364K	0.999	80	0%	92	20.7%	2	0%	benign(0.325)	deleterious(0.03)	neutral(0.466)	NULL
ACOT11	26027	genome.wustl.edu	37	1	55050476	55050478	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	GTG	GTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015547.2	+1	reviewed	p.G62in_frame_del	0.999:0.032:0.998	-	-	-	-	-	-	-	-	-	superfamily_Thioesterase/thiol ester dehydrase-isomerase
LRRC7	57554	genome.wustl.edu	37	1	70573498	70573498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020794.2	+1	validated	p.K1499E	1.000	334	0%	275	13.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
NEXN	91624	genome.wustl.edu	37	1	78383333	78383333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144573.3	+1	reviewed	p.A37V	1.000	441	0%	324	42.9%	0	-	benign(0.001)	tolerated(0.1)	neutral(0.286)	NULL
SPATA1	100505741	genome.wustl.edu	37	1	84988111	84988111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081472.1	+1	validated	p.R83H	0.153	294	0%	135	51.9%	0	-	-	-	-	NULL
LRRC8B	23507	genome.wustl.edu	37	1	90049813	90049813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134476.1	+1	validated	p.Q535R	1.000	143	0%	113	51.3%	1	100%	benign(0.004)	tolerated(1)	-	superfamily_SSF52058
PTBP2	58155	genome.wustl.edu	37	1	97216992	97216992	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021190.2	+1	reviewed	p.D17	1.000	248	0%	149	32.2%	2	50%	-	-	-	NULL
SNX7	51375	genome.wustl.edu	37	1	99156709	99156709	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015976.3	+1	reviewed	p.L148	1.000	395	0%	262	35.9%	2	100%	-	-	-	HMMPfam_PX,HMMSmart_PX,superfamily_PX
AMPD2	271	genome.wustl.edu	37	1	110168976	110168976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004037.6	+1	validated	p.R207Q	0.994	98	0%	69	53.6%	6	33.3%	benign(0.001)	tolerated(0.67)	neutral(0.003)	NULL
GSTM3	2947	genome.wustl.edu	37	1	110280933	110280933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000849.4	-1	reviewed	p.R82H	1.000	473	0.2%	411	41.4%	17	47%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GST_N,superfamily_Thioredoxin-like
RAP1A	5906	genome.wustl.edu	37	1	112246984	112246984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010935.1	+1	reviewed	p.G115D	1.000	461	0%	354	37.3%	53	41.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CSDE1	7812	genome.wustl.edu	37	1	115277125	115277125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130523.1	-1	validated	p.R189C	1.000	222	0%	184	23.4%	14	28.5%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	NULL
CHD1L	9557	genome.wustl.edu	37	1	146757118	146757118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004284.3	+1	validated	p.I658V	0.000	304	0%	401	41.6%	20	55%	benign(0.005)	tolerated(0.3)	neutral(0.029)	NULL
BCL9	607	genome.wustl.edu	37	1	147091587	147091587	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004326.2	+1	reviewed	p.H542	0.494	43	0%	74	18.9%	13	38.4%	-	-	-	NULL
BCL9	607	genome.wustl.edu	37	1	147092460	147092461	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004326.2	+1	reviewed	p.P834fs	0.609:0.997	-	-	-	-	-	-	-	-	-	NULL
BCL9	607	genome.wustl.edu	37	1	147092464	147092464	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004326.2	+1	reviewed	p.P835A	1.000	87	0%	132	15.9%	21	0%	possibly_damaging(0.882)	tolerated(0.7)	neutral(0.346)	NULL
HIST2H2AB	317772	genome.wustl.edu	37	1	149859148	149859148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175065.2	-1	reviewed	p.G107S	1.000	178	0%	254	25.2%	7	14.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_H2A,superfamily_Histone-fold
CERS2	29956	genome.wustl.edu	37	1	150938708	150938708	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022075.3	-1	reviewed	p.E353	0.955	226	0%	393	43.3%	98	60.2%	-	-	-	NULL
CRNN	49860	genome.wustl.edu	37	1	152383229	152383229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016190.2	-1	reviewed	p.S110L	0.000	126	0%	210	24.8%	0	-	benign(0.022)	deleterious(0.01)	neutral(0.407)	NULL
NUP210L	91181	genome.wustl.edu	37	1	154125309	154125309	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207308.2	-1	validated	p.L81	1.000	385	0%	573	43.6%	0	-	-	-	-	NULL
UBAP2L	9898	genome.wustl.edu	37	1	154221772	154221772	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014847.3	+1	validated	p.T358A	1.000	274	0%	525	10.5%	26	15.3%	probably_damaging(0.995)	tolerated(0.56)	neutral(0.464)	NULL
LENEP	55891	genome.wustl.edu	37	1	154966229	154966231	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018655.2	+1	reviewed	p.L51in_frame_del	0.996:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MEF2D	4209	genome.wustl.edu	37	1	156437912	156437912	+	Missense_Mutation	SNP	C	C	T	rs111450230	byCluster;byFrequency	TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005920.2	-1	provisional	p.G476E	0.946	59	0%	90	36.7%	42	45.2%	benign(0.309)	deleterious(0.01)	deleterious(0.502)	NULL
HAPLN2	60484	genome.wustl.edu	37	1	156594141	156594141	+	Splice_Site	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021817.2	+1	validated	e3-2	0.999	32	0%	41	22%	0	-	-	-	-	-
CRP	1401	genome.wustl.edu	37	1	159683891	159683891	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000567.2	-1	reviewed	p.S33	0.000	145	0%	252	12.7%	0	-	-	-	-	HMMPfam_Pentaxin,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases
TBX19	9095	genome.wustl.edu	37	1	168274287	168274287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005149.2	+1	reviewed	p.A257T	0.329	239	0%	387	42.1%	2	0%	benign(0.001)	tolerated(0.44)	neutral(0.013)	NULL
PAPPA2	60676	genome.wustl.edu	37	1	176525563	176525563	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020318.2	+1	validated	p.V35	0.095	92	0%	170	11.8%	0	-	-	-	-	NULL
CEP350	9857	genome.wustl.edu	37	1	180023593	180023593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014810.4	+1	reviewed	p.R1740W	0.996	105	0%	161	25.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
STX6	10228	genome.wustl.edu	37	1	180974490	180974490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005819.4	-1	validated	p.E49K	1.000	495	0.2%	755	19.9%	19	21%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_t-snare proteins,HMMPfam_Syntaxin-6_N
HMCN1	83872	genome.wustl.edu	37	1	186135359	186135359	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.C5121	1.000	231	0%	364	17.9%	4	0%	-	-	-	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
TPR	7175	genome.wustl.edu	37	1	186330946	186330946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003292.2	-1	reviewed	p.H282R	1.000	577	0%	611	15.5%	2	0%	possibly_damaging(0.815)	tolerated(0.28)	neutral(0.339)	NULL
TNNI1	7135	genome.wustl.edu	37	1	201380574	201380574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003281.3	-1	reviewed	p.M123V	1.000	138	0%	283	13.1%	8	12.5%	possibly_damaging(0.847)	deleterious(0)	deleterious(0.770)	HMMPfam_Troponin
LGR6	59352	genome.wustl.edu	37	1	202249926	202249926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017403.1	+1	reviewed	p.R221H	0.677	265	0%	433	22.6%	2	0%	benign(0.013)	tolerated(0.16)	neutral(0.060)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like
ADORA1	134	genome.wustl.edu	37	1	203098003	203098003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000674.2	+1	reviewed	p.Y12H	1.000	62	0%	132	21.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
PLXNA2	5362	genome.wustl.edu	37	1	208390487	208390487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025179.3	-1	reviewed	p.E261K	1.000	109	0%	254	43.7%	4	25%	benign(0)	tolerated(1)	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
ITPKB	3707	genome.wustl.edu	37	1	226924156	226924158	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002221.3	-1	reviewed	p.E334in_frame_del	0.001:0.002:0.001	-	-	-	-	-	-	-	-	-	NULL
PSEN2	5664	genome.wustl.edu	37	1	227081780	227081780	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000447.2	+1	reviewed	p.S382T	1.000	55	1.8%	105	33.3%	53	60.3%	possibly_damaging(0.916)	deleterious(0.04)	deleterious(0.716)	HMMPfam_Presenilin,HMMSmart_SM00730
LOC644006	644006	genome.wustl.edu	37	1	231157689	231157689	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_929433.4	+1	model	p.H111	0.870	197	0%	304	25%	0	-	-	-	-	NULL
SDCCAG8	10806	genome.wustl.edu	37	1	243456500	243456500	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006642.2	+1	validated	p.S218	0.007	188	0%	228	11.8%	6	0%	-	-	-	NULL
ZNF496	84838	genome.wustl.edu	37	1	247473645	247473645	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032752.1	-1	provisional	p.Y255	0.079	146	0%	225	12%	7	0%	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
OR2T3	343173	genome.wustl.edu	37	1	248637431	248637431	+	Silent	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005495.1	+1	provisional	p.S260	0.008	581	0%	1069	26.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
PXDN	7837	genome.wustl.edu	37	2	1652514	1652514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012293.1	-1	validated	p.T1013I	1.000	37	0%	62	21%	2	0%	possibly_damaging(0.789)	deleterious(0.03)	deleterious(0.660)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
RRM2	6241	genome.wustl.edu	37	2	10263941	10263941	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034.3	+1	reviewed	p.F133V	1.000	224	0%	145	31%	5	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ribonuc_red_sm,superfamily_Ferritin/RR_like
ROCK2	9475	genome.wustl.edu	37	2	11351885	11351885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004850.3	-1	reviewed	p.K709E	1.000	665	0%	539	16.9%	2	0%	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	NULL
GREB1	9687	genome.wustl.edu	37	2	11706687	11706687	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014668.3	+1	reviewed	p.V120A	1.000	72	0%	110	26.4%	2	100%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
APOB	338	genome.wustl.edu	37	2	21249763	21249763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.S714I	1.000	273	0%	193	37.3%	0	-	probably_damaging(0.999)	-	-	HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions
DPYSL5	56896	genome.wustl.edu	37	2	27165508	27165508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020134.3	+1	validated	p.R444C	0.998	32	0%	37	13.5%	0	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	superfamily_Metalo_hydrolase
LTBP1	4052	genome.wustl.edu	37	2	33500109	33500109	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206943.2	+1	reviewed	p.I942L	1.000	278	0%	172	23.8%	2	0%	benign(0.084)	tolerated(0.73)	neutral(0.007)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
CALM2	805	genome.wustl.edu	37	2	47403610	47403610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456319	-1	known	p.A14V	0.002	82	0%	75	49.3%	52	36.5%	benign(0)	-	-	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97851207	97851207	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000461153	+1	known	p.N667	0.001	752	0%	571	42.4%	0	-	-	-	-	NULL
LONRF2	164832	genome.wustl.edu	37	2	100900774	100900774	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198461.3	-1	validated	p.E751*	0.001	51	0%	45	60%	3	100%	-	-	-	NULL
IL18R1	8809	genome.wustl.edu	37	2	103012990	103012990	+	Splice_Site	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003855.2	+1	reviewed	e10-1	1.000	137	0%	65	41.5%	0	-	-	-	-	-
RGPD3	653489	genome.wustl.edu	37	2	107042525	107042525	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144013.1	-1	validated	p.S875	1.000	663	0%	643	13.1%	1	0%	-	-	-	NULL
BIN1	274	genome.wustl.edu	37	2	127809843	127809843	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139343.1	-1	reviewed	p.P453	0.997	28	0%	26	15.4%	1	0%	-	-	-	NULL
HS6ST1	9394	genome.wustl.edu	37	2	129026019	129026019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004807.2	-1	reviewed	p.Q318R	1.000	77	0%	89	38.2%	13	30.7%	probably_damaging(0.955)	tolerated(0.05)	deleterious(0.744)	HMMPfam_HS6ST
LCT	3938	genome.wustl.edu	37	2	136566100	136566100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002299.2	-1	reviewed	p.E1273K	1.000	334	0.3%	291	41.2%	1	0%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F1_1
LRP1B	53353	genome.wustl.edu	37	2	141072502	141072502	+	Splice_Site	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	e83+2	1.000	227	0%	181	27.6%	0	-	-	-	-	-
LRP1B	53353	genome.wustl.edu	37	2	141946116	141946116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.N296S	1.000	209	0%	169	17.2%	7	28.5%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
TNFAIP6	7130	genome.wustl.edu	37	2	152236046	152236048	+	In_Frame_Del	DEL	AAA	AAA	-	rs71403164	byCluster	TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	AAA	AAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007115.2	+1	reviewed	p.*278in_frame_del	0.961:0.953	-	-	-	-	-	-	-	-	-	NULL
NEB	4703	genome.wustl.edu	37	2	152348642	152348642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.R6487W	1.000	463	0%	345	38.6%	4	0%	probably_damaging(1)	-	-	NULL
UPP2	151531	genome.wustl.edu	37	2	158978093	158978093	+	Silent	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135098.1	+1	validated	p.L266	0.998	354	0%	199	41.2%	0	-	-	-	-	HMMPfam_PNP_UDP_1,superfamily_Purine and uridine phosphorylases
XIRP2	129446	genome.wustl.edu	37	2	168099408	168099408	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152381.4	+1	validated	p.Y502	1.000	112	0%	62	12.9%	0	-	-	-	-	NULL
XIRP2	129446	genome.wustl.edu	37	2	168107703	168107703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152381.4	+1	validated	p.K3267N	0.000	45	0%	40	30%	0	-	benign(0.013)	tolerated(0.31)	neutral(0.028)	NULL
LRP2	4036	genome.wustl.edu	37	2	170072889	170072889	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.I1900	0.996	261	0%	229	12.2%	0	-	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
OLA1	29789	genome.wustl.edu	37	2	174945897	174945897	+	Splice_Site	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424954	-1	known	e8-1	1.000	233	0%	192	21.9%	369	25.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	-
TTN	7273	genome.wustl.edu	37	2	179451274	179451274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.P18882S	1.000	167	0%	143	33.6%	0	-	benign(0.27)	-	-	HMMPfam_fn3
TTN	7273	genome.wustl.edu	37	2	179482698	179482698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.V13226I	0.705	164	0%	168	33.3%	3	100%	benign(0.049)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179523751	179523751	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.P10574	0.605	678	0%	487	21.4%	0	-	-	-	-	HMMPfam_PPAK
GTF3C3	9330	genome.wustl.edu	37	2	197657782	197657782	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012086.2	-1	provisional	p.E103	0.968	176	0%	129	40.3%	3	100%	-	-	-	NULL
UNC80	285175	genome.wustl.edu	37	2	210737624	210737624	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032504.1	+1	validated	p.P1259R	1.000	107	0%	63	22.2%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
CPS1	1373	genome.wustl.edu	37	2	211421567	211421567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122633.1	+1	reviewed	p.R43M	1.000	248	0%	156	16%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FN1	2335	genome.wustl.edu	37	2	216269244	216269244	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212482.1	-1	reviewed	p.Q1041*	1.000	166	0%	142	45.1%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
UGT1A3	54659	genome.wustl.edu	37	2	234638044	234638044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019093.2	+1	reviewed	p.R91H	0.001	240	0%	187	36.9%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
HDLBP	3069	genome.wustl.edu	37	2	242179085	242179085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005336.3	-1	validated	p.T848A	1.000	95	0%	100	34%	86	45.3%	benign(0.011)	deleterious(0.04)	neutral(0.349)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
CPNE9	151835	genome.wustl.edu	37	3	9767710	9767710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153635.2	+1	validated	p.T440M	0.971	355	0%	285	15.4%	0	-	benign(0.014)	tolerated(0.1)	neutral(0.287)	HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300
TSEN2	80746	genome.wustl.edu	37	3	12571271	12571273	+	In_Frame_Del	DEL	ATT	ATT	-	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	ATT	ATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145392.1	+1	reviewed	p.I384in_frame_del	0.994:0.980:0.003	-	-	-	-	-	-	-	-	-	HMMPfam_tRNA_int_endo,superfamily_tRNA-intron endonuclease catalytic domain-like
GALNTL2	117248	genome.wustl.edu	37	3	16254206	16254213	+	Frame_Shift_Del	DEL	CCTGGCTG	CCTGGCTG	-	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	CCTGGCTG	CCTGGCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054110.4	+1	validated	p.T443fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_SSF53448
THRB	7068	genome.wustl.edu	37	3	24231704	24231704	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000461.4	-1	reviewed	p.T48	0.000	530	0.2%	432	38.4%	0	-	-	-	-	NULL
C3orf35	339883	genome.wustl.edu	37	3	37458906	37458906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178339.2	+1	validated	p.R50Q	0.000	245	0%	199	42.2%	0	-	benign(0.004)	-	-	NULL
CSRNP1	64651	genome.wustl.edu	37	3	39184627	39184627	+	Silent	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033027.3	-1	reviewed	p.A563	0.000	34	0%	44	34.1%	13	46.1%	-	-	-	NULL
CCR8	1237	genome.wustl.edu	37	3	39374672	39374672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005201.3	+1	reviewed	p.V284I	0.776	277	0.4%	189	41.8%	0	-	benign(0.056)	deleterious(0.04)	neutral(0.352)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LIMD1	8994	genome.wustl.edu	37	3	45718491	45718491	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014240.2	+1	validated	p.C657	1.000	148	0%	137	14.6%	0	-	-	-	-	HMMPfam_LIM,HMMSmart_LIM
SCAP	22937	genome.wustl.edu	37	3	47476517	47476517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012235.2	-1	reviewed	p.P78H	0.014	261	0%	182	37.9%	8	25%	benign(0.027)	tolerated(0.15)	neutral(0.242)	NULL
CELSR3	1951	genome.wustl.edu	37	3	48694505	48694505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001407.2	-1	reviewed	p.A1342D	0.096	46	0%	46	41.3%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
CELSR3	1951	genome.wustl.edu	37	3	48694515	48694515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001407.2	-1	reviewed	p.G1339R	0.608	62	0%	58	36.2%	0	-	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	NULL
ARIH2	10425	genome.wustl.edu	37	3	48965057	48965058	+	In_Frame_Ins	INS	-	-	GAA	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006321.2	+1	provisional	p.26in_frame_insE	0.989:1.000	-	-	-	-	-	-	-	-	-	NULL
BSN	8927	genome.wustl.edu	37	3	49662497	49662497	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003458.3	+1	reviewed	p.G105A	1.000	60	0%	72	38.9%	0	-	possibly_damaging(0.891)	-	-	NULL
GRM2	2912	genome.wustl.edu	37	3	51747287	51747287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000839.3	+1	reviewed	p.R417C	0.989	26	0%	35	48.6%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GNL3	26354	genome.wustl.edu	37	3	52721366	52721368	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014366.4	+1	validated	p.L61in_frame_del	0.821:0.845:0.996	-	-	-	-	-	-	-	-	-	HMMPfam_GN3L_Grn1
FLNB	2317	genome.wustl.edu	37	3	58148908	58148908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001457.3	+1	reviewed	p.H2350R	1.000	245	0%	202	19.3%	28	28.5%	possibly_damaging(0.794)	tolerated(1)	neutral(0.298)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
PSMD6	9861	genome.wustl.edu	37	3	64008103	64008103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014814.1	-1	provisional	p.L81S	1.000	500	0%	490	38.6%	47	38.2%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_RPN7
PRICKLE2	166336	genome.wustl.edu	37	3	64132683	64132683	+	Silent	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198859.3	-1	validated	p.R495	0.997	173	0%	158	17.7%	0	-	-	-	-	NULL
FOXP1	27086	genome.wustl.edu	37	3	71247379	71247379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032682.4	-1	reviewed	p.A52T	0.993	45	0%	41	58.5%	12	33.3%	benign(0.004)	tolerated(0.13)	neutral(0.253)	NULL
SIDT1	54847	genome.wustl.edu	37	3	113251993	113251993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017699.2	+1	validated	p.A42V	0.287	29	0%	28	21.4%	2	50%	benign(0.002)	tolerated(0.33)	neutral(0.024)	NULL
POLQ	10721	genome.wustl.edu	37	3	121263679	121263679	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199420.3	-1	validated	p.V80L	1.000	504	0%	272	34.6%	0	-	possibly_damaging(0.485)	tolerated(0.2)	neutral(0.210)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MCM2	4171	genome.wustl.edu	37	3	127327730	127327730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004526.2	+1	reviewed	p.G431D	1.000	210	0%	202	41.1%	8	12.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_MCM,superfamily_Nucleic_acid_OB
COPG1	22820	genome.wustl.edu	37	3	128990639	128990639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016128.3	+1	validated	p.G625S	0.000	176	0%	195	15.4%	90	15.5%	benign(0)	tolerated(0.73)	neutral(0.002)	superfamily_Clathrin adaptor appendage domain,HMMPfam_Gamma-COP
NME9	347736	genome.wustl.edu	37	3	138023757	138023757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178130.2	-1	provisional	p.G189D	1.000	106	0%	100	37%	2	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_NDK,HMMSmart_NDK,superfamily_NDK
RASA2	5922	genome.wustl.edu	37	3	141277769	141277769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006506.2	+1	reviewed	p.Q242H	1.000	156	0%	100	20%	4	25%	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
ATR	545	genome.wustl.edu	37	3	142285036	142285036	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001184.3	-1	reviewed	p.Q73	1.000	205	0%	166	34.9%	1	100%	-	-	-	NULL
TRIM59	286827	genome.wustl.edu	37	3	160155852	160155853	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173084.2	-1	validated	p.S374fs	0.937:0.936	-	-	-	-	-	-	-	-	-	NULL
RTP1	132112	genome.wustl.edu	37	3	186917829	186917829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153708.2	+1	validated	p.L255M	1.000	99	0%	120	21.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CCDC50	152137	genome.wustl.edu	37	3	191074905	191074905	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178335.2	+1	reviewed	p.D26	1.000	642	0%	537	44.1%	10	20%	-	-	-	NULL
FAM157A	728262	genome.wustl.edu	37	3	197880210	197880210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145248.1	+1	inferred	p.L97M	0.026	314	0%	253	12.6%	0	-	unknown(0)	deleterious(0)	-	NULL
CRIPAK	285464	genome.wustl.edu	37	4	1388539	1388539	+	Silent	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175918.3	+1	validated	p.P80	0.000	196	0%	207	17.9%	14	14.2%	-	-	-	NULL
EVC	2121	genome.wustl.edu	37	4	5754687	5754687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153717.2	+1	reviewed	p.A408V	0.019	72	0%	73	30.1%	0	-	unknown(0)	tolerated(0.13)	-	NULL
WFS1	7466	genome.wustl.edu	37	4	6302497	6302497	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000506362	+1	known	p.T203M	0.998	459	0%	508	15.9%	3	0%	-	-	-	NULL
ABLIM2	84448	genome.wustl.edu	37	4	8098906	8098906	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130083.1	-1	validated	p.C86	0.999	34	0%	49	34.7%	0	-	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
BOD1L	259282	genome.wustl.edu	37	4	13604214	13604214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148894.2	-1	validated	p.G1437D	0.000	251	0%	171	40.4%	1	100%	benign(0.023)	tolerated(0.18)	neutral(0.057)	superfamily_SSF81995
ENAM	10117	genome.wustl.edu	37	4	71508607	71508607	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031889.2	+1	reviewed	p.V488	0.770	96	0%	50	16%	0	-	-	-	-	NULL
SHROOM3	57619	genome.wustl.edu	37	4	77357335	77357335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020859.3	+1	validated	p.G44C	1.000	430	0%	340	44.7%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
SEC31A	22872	genome.wustl.edu	37	4	83778843	83778843	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000507828	-1	known	p.G184R	0.935	286	0%	230	21.3%	3	33.3%	-	-	-	NULL
PDHA2	5161	genome.wustl.edu	37	4	96762309	96762309	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005390.4	+1	validated	p.I336	0.659	160	0%	158	39.2%	0	-	-	-	-	HMMPfam_E1_dh,superfamily_SSF52518
SLC9B2	133308	genome.wustl.edu	37	4	103970157	103970157	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178833.4	-1	validated	p.G202	0.992	191	0%	152	39.5%	1	0%	-	-	-	HMMPfam_Na_H_Exchanger
TACR3	6870	genome.wustl.edu	37	4	104579486	104579486	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001059.1	-1	reviewed	p.W208*	1.000	333	0%	264	20.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
FAT4	79633	genome.wustl.edu	37	4	126372285	126372285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.K3372E	1.000	192	0%	156	41%	0	-	benign(0.313)	tolerated(0.08)	neutral(0.397)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
LARP1B	55132	genome.wustl.edu	37	4	129127662	129127662	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018078.2	+1	reviewed	p.Q797*	1.000	180	0%	87	25.3%	0	-	-	-	-	HMMSmart_SM00684
HHIP	64399	genome.wustl.edu	37	4	145658914	145658914	+	Splice_Site	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022475.1	+1	reviewed	e13-2	1.000	231	0%	217	33.2%	0	-	-	-	-	-
DCHS2	54798	genome.wustl.edu	37	4	155156254	155156254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017639.3	-1	validated	p.P2729S	0.000	244	0%	237	44.3%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
PLRG1	5356	genome.wustl.edu	37	4	155461175	155461175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002669.2	-1	provisional	p.H324Y	1.000	455	0%	324	37%	29	51.7%	possibly_damaging(0.818)	tolerated(0.08)	deleterious(0.609)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
PLRG1	5356	genome.wustl.edu	37	4	155463420	155463420	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002669.2	-1	provisional	p.G202	0.984	251	0%	181	34.3%	12	41.6%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
TMA16	55319	genome.wustl.edu	37	4	164428216	164428216	+	Frame_Shift_Del	DEL	G	G	-	rs34907234	byCluster;byFrequency;by1000genomes	TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018352.2	+1	validated	p.E13fs	0.840	-	-	-	-	-	-	-	-	-	NULL
CLCN3	1182	genome.wustl.edu	37	4	170618569	170618569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173872.2	+1	validated	p.R416H	1.000	258	0%	227	53.3%	1	100%	possibly_damaging(0.563)	deleterious(0.03)	deleterious(0.557)	HMMPfam_Voltage_CLC,superfamily_Cl-channel_core
MTNR1A	4543	genome.wustl.edu	37	4	187476403	187476403	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000509111	-1	known	p.W21*	1.000	21	0%	34	29.4%	0	-	-	-	-	NULL
TRIO	7204	genome.wustl.edu	37	5	14406753	14406753	+	Missense_Mutation	SNP	C	C	T	rs55687522		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007118.2	+1	validated	p.T1644M	1.000	91	0%	76	60.5%	2	0%	unknown(0)	tolerated(0.09)	-	superfamily_SH3-domain
RAD1	5810	genome.wustl.edu	37	5	34914997	34914997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002853.3	-1	reviewed	p.M1V	0.974	97	0%	85	38.8%	16	37.5%	possibly_damaging(0.46)	deleterious(0)	deleterious(0.596)	NULL
RICTOR	253260	genome.wustl.edu	37	5	38950098	38950098	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152756.3	-1	validated	p.S1284	0.449	156	0%	126	34.1%	2	0%	-	-	-	superfamily_ARM repeat
ITGA2	3673	genome.wustl.edu	37	5	52385816	52385816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002203.3	+1	reviewed	p.V1130A	0.988	413	0%	260	38.1%	0	-	possibly_damaging(0.873)	deleterious(0)	deleterious(0.784)	superfamily_Integrin domains
MTX3	345778	genome.wustl.edu	37	5	79286054	79286054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010891.4	-1	validated	p.V53I	1.000	351	0%	210	39.5%	0	-	benign(0.104)	deleterious(0.05)	neutral(0.353)	HMMPfam_Tom37
XRCC4	7518	genome.wustl.edu	37	5	82400845	82400845	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022406.2	+1	reviewed	p.L36P	1.000	250	0%	159	40.9%	4	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_XRCC4 N-terminal domain,HMMPfam_XRCC4
ERAP1	51752	genome.wustl.edu	37	5	96139461	96139461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016442.3	-1	validated	p.Y57H	0.000	433	0%	421	14.3%	1	0%	benign(0)	tolerated(0.54)	neutral(0.007)	HMMPfam_Peptidase_M1,superfamily_SSF63737
FEM1C	56929	genome.wustl.edu	37	5	114879071	114879071	+	Silent	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020177.2	-1	validated	p.N40	0.419	80	0%	96	16.7%	3	33.3%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
MEGF10	84466	genome.wustl.edu	37	5	126746208	126746208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032446.2	+1	validated	p.R349C	0.185	130	0%	142	43%	0	-	benign(0.188)	tolerated(0.06)	neutral(0.340)	HMMSmart_SM00180,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
KDM3B	51780	genome.wustl.edu	37	5	137722304	137722304	+	Silent	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016604.3	+1	validated	p.S458	0.994	101	0%	99	39.4%	0	-	-	-	-	NULL
WDR55	54853	genome.wustl.edu	37	5	140049100	140049100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017706.4	+1	validated	p.R338H	1.000	144	0%	134	17.2%	15	13.3%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
PCDHA2	56146	genome.wustl.edu	37	5	140175986	140175986	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018905.2	+1	reviewed	p.A479	0.020	99	0%	127	37%	1	100%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB6	56130	genome.wustl.edu	37	5	140531158	140531158	+	Silent	SNP	C	C	T	rs146356849	by1000genomes	TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018939.2	+1	reviewed	p.S440	0.365	189	0%	202	36.6%	3	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
PCDHB6	56130	genome.wustl.edu	37	5	140531242	140531242	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018939.2	+1	reviewed	p.I468	0.009	142	0%	153	50.3%	16	50%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin
PCDHGA6	56109	genome.wustl.edu	37	5	140754086	140754086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018919.2	+1	reviewed	p.A146T	0.472	102	1%	69	33.3%	0	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGA7	56108	genome.wustl.edu	37	5	140762611	140762611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018920.2	+1	reviewed	p.A49T	1.000	45	0%	53	43.4%	0	-	benign(0.077)	deleterious(0.03)	neutral(0.370)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
ARHGAP26	23092	genome.wustl.edu	37	5	142283115	142283115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015071.4	+1	reviewed	p.R238H	1.000	114	0%	54	38.9%	0	-	possibly_damaging(0.488)	tolerated(0.33)	neutral(0.186)	NULL
PPARGC1B	133522	genome.wustl.edu	37	5	149216388	149216389	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133263.3	+1	reviewed	p.V791fs	0.062:0.957	-	-	-	-	-	-	-	-	-	NULL
PDGFRB	5159	genome.wustl.edu	37	5	149497407	149497407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002609.3	-1	reviewed	p.Q971K	1.000	120	0.8%	106	49.1%	4	25%	benign(0.002)	tolerated(0.45)	neutral(0.012)	NULL
KIF4B	285643	genome.wustl.edu	37	5	154395704	154395704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099293.1	+1	provisional	p.R762H	1.000	184	0%	135	31.1%	0	-	possibly_damaging(0.444)	tolerated(0.73)	neutral(0.146)	NULL
C5orf52	100190949	genome.wustl.edu	37	5	157098685	157098685	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145132.1	+1	validated	p.T21	0.001	7	0.000	13	0.385	0	-	-	-	-	NULL
ENSG00000241956	0	genome.wustl.edu	37	5	164028109	164028109	+	RNA	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000486913	+1	known	NULL	1.000	68	0%	74	10.8%	0	-	-	-	-	-
TMED9	54732	genome.wustl.edu	37	5	177022352	177022352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017510.4	+1	validated	p.V215M	1.000	82	0%	65	20%	193	22.7%	possibly_damaging(0.949)	deleterious(0.01)	deleterious(0.798)	HMMPfam_EMP24_GP25L
HIVEP1	3096	genome.wustl.edu	37	6	12164036	12164036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002114.2	+1	validated	p.G2500D	1.000	86	0%	90	35.6%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
JARID2	3720	genome.wustl.edu	37	6	15508607	15508607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004973.2	+1	reviewed	p.F923S	1.000	394	0%	311	44.1%	2	50%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00558,HMMPfam_JmjC
MRS2	57380	genome.wustl.edu	37	6	24412567	24412567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020662.2	+1	validated	p.V178I	0.999	505	0%	376	38.3%	14	64.2%	probably_damaging(0.991)	tolerated(0.21)	deleterious(0.488)	HMMPfam_CorA
HFE	3077	genome.wustl.edu	37	6	26093075	26093075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000410.3	+1	reviewed	p.G260V	1.000	183	0%	179	15.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
HIST1H2BG	8339	genome.wustl.edu	37	6	26216772	26216772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003518.3	-1	reviewed	p.R34C	1.000	424	0%	366	40.2%	8	37.5%	unknown(0)	deleterious(0.04)	-	HMMSmart_SM00427,HMMPfam_Histone,superfamily_Histone-fold
HIST1H2AJ	8331	genome.wustl.edu	37	6	27782476	27782476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021066.2	-1	reviewed	p.A15T	1.000	128	0%	80	27.5%	2	50%	unknown(0)	deleterious(0.01)	-	HMMSmart_SM00414,superfamily_Histone-fold
TNXB	7148	genome.wustl.edu	37	6	32064811	32064811	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019105.6	-1	reviewed	p.D273	0.564	67	0%	95	16.8%	0	-	-	-	-	HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin
FANCE	2178	genome.wustl.edu	37	6	35430691	35430691	+	Silent	SNP	C	C	T	rs147166240	by1000genomes	TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021922.2	+1	reviewed	p.N503	0.000	111	0%	105	40%	1	100%	-	-	-	NULL
PIM1	5292	genome.wustl.edu	37	6	37141801	37141801	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002648.3	+1	validated	p.D292E	0.951	87	0%	71	33.8%	64	39%	benign(0)	tolerated(0.68)	neutral(0.002)	superfamily_Protein kinase-like (PK-like)
MEP1A	4224	genome.wustl.edu	37	6	46801256	46801256	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005588.2	+1	validated	p.S530	0.000	90	0%	94	19.1%	0	-	-	-	-	HMMPfam_MATH,HMMSmart_MATH,superfamily_Traf_like
HMGCLL1	54511	genome.wustl.edu	37	6	55443827	55443827	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019036.2	-1	validated	p.K9	1.000	23	0%	41	43.9%	0	-	-	-	-	NULL
PHF3	23469	genome.wustl.edu	37	6	64356462	64356462	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015153.2	+1	provisional	p.D2	1.000	114	0%	79	11.4%	1	0%	-	-	-	NULL
FAM135A	57579	genome.wustl.edu	37	6	71235370	71235370	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105531.2	+1	validated	p.P665	0.997	126	0%	69	39.1%	5	60%	-	-	-	NULL
HTR1E	3354	genome.wustl.edu	37	6	87725545	87725545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000865.2	+1	validated	p.R165C	0.318	123	0%	122	44.3%	0	-	benign(0.005)	deleterious(0.02)	neutral(0.383)	HMMPfam_7tm_1,superfamily_SSF81321
MICAL1	64780	genome.wustl.edu	37	6	109773792	109773792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022765.3	-1	validated	p.P200T	1.000	50	0%	52	55.8%	5	40%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	superfamily_FAD/NAD(P)-binding domain
LAMA4	3910	genome.wustl.edu	37	6	112575086	112575086	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105208.1	-1	reviewed	p.F89	0.000	137	0%	105	32.4%	13	15.3%	-	-	-	NULL
DSE	29940	genome.wustl.edu	37	6	116754598	116754598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080976.1	+1	reviewed	p.R335C	1.000	251	0%	217	40.1%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
EPB41L2	2037	genome.wustl.edu	37	6	131190992	131190992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001431.3	-1	validated	p.Y773C	0.001	245	0%	285	16.5%	7	0%	probably_damaging(0.974)	tolerated(0.21)	neutral(0.460)	NULL
IPCEF1	26034	genome.wustl.edu	37	6	154533925	154533925	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130699.1	-1	validated	p.H172	0.003	447	0%	372	18.5%	1	0%	-	-	-	NULL
RSPH3	83861	genome.wustl.edu	37	6	159420727	159420728	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031924.4	-1	validated	p.P96fs	0.515:0.515	-	-	-	-	-	-	-	-	-	NULL
PNLDC1	154197	genome.wustl.edu	37	6	160221854	160221854	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173516.1	+1	provisional	p.Q32*	0.997	214	0%	248	47.2%	0	-	-	-	-	superfamily_Ribonuclease H-like
TMEM184A	202915	genome.wustl.edu	37	7	1588260	1588260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097620.1	-1	validated	p.A237T	1.000	406	0.2%	432	10.6%	13	0%	possibly_damaging(0.892)	deleterious(0.01)	deleterious(0.757)	HMMPfam_DUF300
GNA12	2768	genome.wustl.edu	37	7	2771110	2771110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007353.2	-1	validated	p.K284R	1.000	155	0%	179	21.2%	4	0%	probably_damaging(0.989)	tolerated(0.57)	neutral(0.446)	HMMPfam_G-alpha,superfamily_SSF52540
TNRC18	84629	genome.wustl.edu	37	7	5352184	5352184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080495.2	-1	provisional	p.A2780T	1.000	18	0%	33	33.3%	100	15%	possibly_damaging(0.845)	-	-	NULL
GRID2IP	392862	genome.wustl.edu	37	7	6547758	6547758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145118.1	-1	validated	p.P801L	0.994	4	0.000	8	0.875	1	100%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_FH2_actin_bd
LOC100131257	100131257	genome.wustl.edu	37	7	7118413	7118413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716696.1	-1	model	p.P264H	0.967	51	0%	46	21.7%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
FAM126A	84668	genome.wustl.edu	37	7	22985626	22985626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032581.3	-1	reviewed	p.R383Q	1.000	196	0%	137	21.2%	4	100%	possibly_damaging(0.868)	tolerated(0.14)	deleterious(0.587)	NULL
HOXA10	3206	genome.wustl.edu	37	7	27211692	27211694	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018951.3	-1	reviewed	p.K353in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
SFRP4	6424	genome.wustl.edu	37	7	37951817	37951817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003014.3	-1	reviewed	p.R232Q	0.983	467	0%	469	13.9%	123	0%	benign(0.172)	deleterious(0.01)	neutral(0.421)	superfamily_TIMP_like,HMMPfam_NTR,HMMSmart_C345C
ZNF736	728927	genome.wustl.edu	37	7	63808690	63808690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423484	+1	known	p.C150F	0.999	531	0%	345	36.8%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_C2H2 and C2HC zinc fingers
TYW1	55253	genome.wustl.edu	37	7	66703426	66703426	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018264.2	+1	validated	p.W703*	1.000	563	0.2%	479	38.6%	10	70%	-	-	-	NULL
ELN	2006	genome.wustl.edu	37	7	73480308	73480308	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000501.2	+1	reviewed	p.A689	0.423	230	0%	168	31%	4	25%	-	-	-	NULL
MAGI2	9863	genome.wustl.edu	37	7	77973181	77973181	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012301.3	-1	reviewed	p.I441N	1.000	382	0%	316	16.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
SEMA3D	223117	genome.wustl.edu	37	7	84642151	84642151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152754.2	-1	validated	p.R572H	1.000	277	0%	183	38.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PSI,superfamily_Plexin-like_fold
ABCB1	5243	genome.wustl.edu	37	7	87179168	87179168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000927.3	-1	reviewed	p.H518R	0.988	368	0%	302	19.2%	0	-	benign(0.014)	tolerated(0.14)	neutral(0.250)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
SAMD9L	219285	genome.wustl.edu	37	7	92763172	92763172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152703.2	-1	validated	p.Y705H	0.995	46	0%	42	47.6%	0	-	probably_damaging(0.991)	tolerated(0.16)	deleterious(0.504)	NULL
ASB4	51666	genome.wustl.edu	37	7	95157343	95157343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016116.1	+1	reviewed	p.R236C	1.000	88	0%	92	55.4%	0	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
TRRAP	8295	genome.wustl.edu	37	7	98529083	98529083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003496.2	+1	validated	p.R1216Q	1.000	69	0%	72	16.7%	2	0%	possibly_damaging(0.855)	deleterious(0.01)	deleterious(0.736)	superfamily_ARM repeat
TRRAP	8295	genome.wustl.edu	37	7	98547410	98547410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003496.2	+1	validated	p.A1669V	1.000	59	0%	56	46.4%	3	33.3%	benign(0.428)	tolerated(0.51)	neutral(0.148)	superfamily_ARM repeat
TRRAP	8295	genome.wustl.edu	37	7	98591318	98591318	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456197	+1	known	p.S3050L	1.000	653	0.5%	509	37.3%	11	9%	-	-	-	superfamily_ARM repeat
ZNF3	7551	genome.wustl.edu	37	7	99668911	99668911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032924.3	-1	validated	p.S399N	0.676	312	0.3%	279	38.7%	15	40%	benign(0.009)	tolerated(0.67)	neutral(0.003)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
C7orf43	55262	genome.wustl.edu	37	7	99754149	99754149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018275.3	-1	predicted	p.R367H	1.000	198	0%	175	36%	25	60%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
MUC12	10071	genome.wustl.edu	37	7	100635320	100635320	+	Silent	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000379442	+1	known	p.K635	0.025	347	0%	378	18.3%	0	-	-	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100677699	100677699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.S1001N	0.031	405	0%	524	45.2%	0	-	unknown(0)	-	-	NULL
PIK3CG	5294	genome.wustl.edu	37	7	106513168	106513168	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002649.2	+1	reviewed	p.I691N	1.000	307	0%	246	42.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PI3Ka,HMMSmart_SM00145,superfamily_ARM repeat
PTPRZ1	5803	genome.wustl.edu	37	7	121676699	121676699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002851.2	+1	reviewed	p.G1777D	1.000	260	0%	170	17.1%	2	0%	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
CADPS2	93664	genome.wustl.edu	37	7	121985636	121985636	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017954.10	-1	reviewed	p.L1202I	0.826	624	0%	458	35.6%	31	51.6%	benign(0.006)	tolerated(0.14)	neutral(0.249)	NULL
GCC1	79571	genome.wustl.edu	37	7	127223206	127223206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024523.5	-1	reviewed	p.R397H	1.000	99	0%	94	53.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRC4	64101	genome.wustl.edu	37	7	127670301	127670301	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022143.4	-1	validated	p.F131	0.995	185	0%	186	43%	5	40%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
JHDM1D	80853	genome.wustl.edu	37	7	139796398	139796398	+	Silent	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000472616	-1	known	p.M372T	0.021	393	0%	334	43.1%	2	100%	-	-	-	NULL
ABP1	26	genome.wustl.edu	37	7	150555997	150555997	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001091.2	+1	reviewed	p.L573	0.463	33	0%	32	21.9%	1	0%	-	-	-	HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain
AGAP3	116988	genome.wustl.edu	37	7	150840945	150840945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031946.4	+1	validated	p.C884Y	0.976	19	0%	22	22.7%	142	14.7%	benign(0.001)	tolerated(1)	-	NULL
SMARCD3	6604	genome.wustl.edu	37	7	150937219	150937221	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003801.1	-1	reviewed	p.E384in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CSMD1	64478	genome.wustl.edu	37	8	2944677	2944677	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.T2473	0.309	237	0%	186	20.4%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SGK223	157285	genome.wustl.edu	37	8	8185832	8185832	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080826.1	-1	validated	p.S820	1.000	117	0%	118	50.8%	0	-	-	-	-	NULL
SLC7A2	6542	genome.wustl.edu	37	8	17412565	17412565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003046.5	+1	validated	p.A429V	1.000	335	0%	284	34.5%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_AA_permease
MTUS1	57509	genome.wustl.edu	37	8	17611238	17611238	+	Silent	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001924.2	-1	reviewed	p.G693	0.001	339	0%	183	37.2%	1	100%	-	-	-	NULL
DOCK5	80005	genome.wustl.edu	37	8	25136110	25136110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024940.6	+1	validated	p.E84K	0.997	244	0%	246	41.5%	0	-	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	NULL
CDCA2	157313	genome.wustl.edu	37	8	25364100	25364100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152562.2	+1	validated	p.R640C	0.001	92	0%	36	16.7%	1	100%	benign(0.03)	tolerated(0.06)	neutral(0.324)	NULL
RP1	6101	genome.wustl.edu	37	8	55541829	55541829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006269.1	+1	reviewed	p.T1796M	0.000	186	0%	172	18%	0	-	benign(0.167)	deleterious(0)	neutral(0.460)	NULL
CLVS1	157807	genome.wustl.edu	37	8	62212627	62212627	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173519.2	+1	validated	p.R81*	0.997	199	0%	199	38.7%	0	-	-	-	-	HMMPfam_CRAL_TRIO_N,superfamily_CRAL/TRIO N-terminal domain
TRPA1	8989	genome.wustl.edu	37	8	72967782	72967782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007332.2	-1	reviewed	p.R473K	0.999	310	0%	207	50.7%	0	-	benign(0.393)	tolerated(1)	neutral(0.126)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,PatternScan_EF_HAND_1
VPS13B	157680	genome.wustl.edu	37	8	100148970	100148970	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.T547	1.000	543	0%	403	40%	4	75%	-	-	-	NULL
CSMD3	114788	genome.wustl.edu	37	8	113363470	113363470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.H2087Y	1.000	313	0%	196	11.2%	0	-	possibly_damaging(0.903)	tolerated(0.18)	neutral(0.414)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ZFAT	57623	genome.wustl.edu	37	8	135533239	135533239	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020863.3	-1	reviewed	p.L1041V	0.906	264	0%	175	19.4%	8	37.5%	possibly_damaging(0.88)	tolerated(0.06)	deleterious(0.665)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CYP11B1	1584	genome.wustl.edu	37	8	143957674	143957674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000497.3	-1	reviewed	p.A313T	0.986	206	0%	194	16.5%	0	-	benign(0.336)	deleterious(0.02)	deleterious(0.489)	HMMPfam_p450,superfamily_Cytochrome_P450
EEF1D	1936	genome.wustl.edu	37	8	144671300	144671300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130053.1	-1	reviewed	p.S318G	0.997	6	0.000	13	0.308	41	43.9%	benign(0.002)	tolerated(0.06)	neutral(0.323)	NULL
GPAA1	8733	genome.wustl.edu	37	8	145139945	145139945	+	Splice_Site	SNP	C	C	T	rs187027021	by1000genomes	TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003801.3	+1	reviewed	e9-1	0.309	127	0%	87	43.7%	7	71.4%	-	-	-	-
RANBP6	26953	genome.wustl.edu	37	9	6013878	6013878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012416.2	-1	validated	p.G577E	1.000	356	0%	256	32.4%	8	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
KLHL9	55958	genome.wustl.edu	37	9	21333570	21333570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018847.2	-1	validated	p.A430V	1.000	384	0%	287	35.5%	7	57.1%	possibly_damaging(0.731)	deleterious(0.04)	deleterious(0.616)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KLHL9	55958	genome.wustl.edu	37	9	21333734	21333734	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018847.2	-1	validated	p.R375	0.994	185	0%	160	35%	6	16.6%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
ACO1	48	genome.wustl.edu	37	9	32450068	32450068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002197.2	+1	reviewed	p.G877R	1.000	194	0%	193	33.7%	11	36.3%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	superfamily_Aconitase
ANKRD18B	441459	genome.wustl.edu	37	9	33548515	33548515	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001718334.2	+1	model	p.S643C	0.171	354	0%	287	38%	0	-	probably_damaging(0.989)	tolerated(0.13)	deleterious(0.692)	NULL
ZCCHC7	84186	genome.wustl.edu	37	9	37327831	37327831	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032226.2	+1	validated	p.T329	0.992	343	0.6%	277	45.1%	20	55%	-	-	-	superfamily_Retrovirus zinc finger-like domains
ZNF658	26149	genome.wustl.edu	37	9	40784527	40784527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033160.5	-1	validated	p.T31M	0.005	192	0%	213	35.7%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
CEP78	84131	genome.wustl.edu	37	9	80855050	80855050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098802.1	+1	validated	p.L122P	0.937	278	0.4%	213	20.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52047
LOC100129901	100129901	genome.wustl.edu	37	9	88396261	88396261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716099.2	+1	model	p.R42Q	0.004	231	0%	157	40.8%	1	100%	-	-	-	NULL
ROR2	4920	genome.wustl.edu	37	9	94487076	94487076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004560.2	-1	reviewed	p.M567T	1.000	34	0%	35	42.9%	1	100%	probably_damaging(0.969)	tolerated(0.59)	neutral(0.416)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
BARX1	56033	genome.wustl.edu	37	9	96714572	96714572	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021570.3	-1	reviewed	p.P213	0.963	98	0%	67	34.3%	60	53.3%	-	-	-	NULL
FAM22G	441457	genome.wustl.edu	37	9	99700951	99700951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372322	+1	known	p.Q582H	0.001	199	0%	194	13.4%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
CORO2A	7464	genome.wustl.edu	37	9	100895356	100895356	+	Silent	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003389.3	-1	reviewed	p.I204	0.998	306	0%	306	42.8%	1	100%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
C9orf84	158401	genome.wustl.edu	37	9	114456526	114456526	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173521.3	-1	validated	p.V1037fs	0.973	-	-	-	-	-	-	-	-	-	NULL
ZNF618	114991	genome.wustl.edu	37	9	116811195	116811195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133374.2	+1	validated	p.T445I	1.000	38	0%	28	25%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DBC1	1620	genome.wustl.edu	37	9	121929375	121929375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014618.2	-1	validated	p.A758V	1.000	441	0%	368	14.9%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
GOLGA1	2800	genome.wustl.edu	37	9	127661675	127661675	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002077.3	-1	reviewed	p.L415Q	0.969	115	0%	132	18.2%	3	0%	-	-	-	NULL
LOC100289277	100289277	genome.wustl.edu	37	9	135139995	135139995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344239.1	+1	model	p.K97E	0.000	172	0%	173	24.3%	12	50%	-	-	-	NULL
TSC1	7248	genome.wustl.edu	37	9	135772056	135772056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000368.4	-1	reviewed	p.P1021S	0.987	37	0%	28	35.7%	4	75%	benign(0.002)	tolerated(0.55)	neutral(0.007)	NULL
ITIH5	80760	genome.wustl.edu	37	10	7607998	7607998	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030569.5	-1	validated	p.L841R	0.997	136	0%	124	50%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ITI_HC_C
PHYH	5264	genome.wustl.edu	37	10	13330465	13330465	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006214.3	-1	reviewed	p.C191	0.804	77	0%	74	31.1%	27	29.6%	-	-	-	HMMPfam_PhyH
ARMC4	55130	genome.wustl.edu	37	10	28272820	28272820	+	Silent	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018076.2	-1	validated	p.G257	0.004	110	0%	81	17.3%	0	-	-	-	-	NULL
PBLD	64081	genome.wustl.edu	37	10	70051885	70051885	+	Splice_Site	SNP	C	C	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022129.3	-1	validated	e4+1	1.000	200	0%	117	35.9%	0	-	-	-	-	-
KIAA0913	23053	genome.wustl.edu	37	10	75558964	75558964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015037.2	+1	validated	p.M1461V	0.797	108	0%	86	43%	13	23%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
KIF11	3832	genome.wustl.edu	37	10	94392246	94392246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004523.3	+1	reviewed	p.L500F	1.000	99	0%	63	17.5%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
SEC31B	25956	genome.wustl.edu	37	10	102269202	102269202	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015490.3	-1	reviewed	p.G90	0.979	115	0.9%	132	33.3%	2	0%	-	-	-	superfamily_WD40 repeat-like
BTRC	8945	genome.wustl.edu	37	10	103294576	103294576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033637.2	+1	reviewed	p.R419Q	1.000	332	0%	284	13.4%	3	33.3%	benign(0.234)	tolerated(0.4)	neutral(0.040)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
INPP5F	22876	genome.wustl.edu	37	10	121510592	121510592	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014937.2	+1	reviewed	p.T34	0.942	764	0%	470	37.9%	4	50%	-	-	-	NULL
FGFR2	2263	genome.wustl.edu	37	10	123279677	123279677	+	Missense_Mutation	SNP	G	G	C	rs79184941	byCluster	TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022970.3	-1	reviewed	p.S252W	1.000	89	0%	112	48.2%	1	100%	probably_damaging(0.963)	tolerated(0.07)	deleterious(0.725)	NULL
CPXM2	119587	genome.wustl.edu	37	10	125521574	125521574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198148.2	-1	validated	p.R531W	0.971	72	0%	58	39.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
DOCK1	1793	genome.wustl.edu	37	10	128798496	128798496	+	Missense_Mutation	SNP	G	G	A	rs140885933	by1000genomes	TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398025	+1	known	p.V304M	0.998	230	0%	160	26.3%	4	25%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
CLRN3	119467	genome.wustl.edu	37	10	129676685	129676685	+	Splice_Site	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152311.3	-1	validated	e3-1	0.985	145	0%	116	38.8%	2	100%	-	-	-	-
MUC5B	727897	genome.wustl.edu	37	11	1271835	1271835	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.T4578	0.000	574	0.5%	735	36.7%	1	0%	benign(0.014)	tolerated(0.29)	neutral(0.030)	NULL
PGAP2	27315	genome.wustl.edu	37	11	3846853	3846855	+	RNA	DEL	CTC	CTC	-	rs3217617	byCluster;by1000genomes	TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_027014.1	+1	validated	NULL	0.231:0.226:0.001	-	-	-	-	-	-	-	-	-	-
CNGA4	1262	genome.wustl.edu	37	11	6261781	6261781	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037329.2	+1	validated	p.L253	1.000	56	0%	48	41.7%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NLRP14	338323	genome.wustl.edu	37	11	7064373	7064373	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176822.3	+1	reviewed	p.C372*	0.999	170	0%	164	37.2%	0	-	-	-	-	NULL
LOC100288260	100288260	genome.wustl.edu	37	11	9090905	9090905	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343071.1	+1	model	p.W342*	0.001	42	0%	43	25.6%	1	100%	-	-	-	NULL
IPO7	10527	genome.wustl.edu	37	11	9406315	9406315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006391.2	+1	reviewed	p.D2G	1.000	34	0%	30	53.3%	4	25%	unknown(0)	deleterious(0)	-	superfamily_ARM-type_fold
CTR9	9646	genome.wustl.edu	37	11	10789525	10789525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014633.3	+1	provisional	p.R620Q	1.000	311	0%	231	42.4%	0	-	possibly_damaging(0.477)	deleterious(0.04)	deleterious(0.506)	superfamily_SSF48452
SPTY2D1	144108	genome.wustl.edu	37	11	18636576	18636576	+	Silent	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194285.2	-1	validated	p.S415	0.928	22	0%	22	45.5%	0	-	-	-	-	NULL
E2F8	79733	genome.wustl.edu	37	11	19251266	19251266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024680.2	-1	validated	p.T543M	0.072	223	0%	233	37.3%	0	-	benign(0.18)	tolerated(0.1)	neutral(0.303)	NULL
ANO5	203859	genome.wustl.edu	37	11	22261223	22261223	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213599.2	+1	reviewed	p.L291M	0.994	253	0%	181	16.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC34	91057	genome.wustl.edu	37	11	27384546	27384546	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030771.1	-1	validated	p.L66	0.938	163	0%	155	23.2%	23	26%	-	-	-	NULL
ACCS	84680	genome.wustl.edu	37	11	44098876	44098876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127219.1	+1	validated	p.V202M	0.768	121	0%	105	44.8%	9	55.5%	benign(0.029)	tolerated(0.15)	neutral(0.242)	HMMPfam_Aminotran_1_2,superfamily_PyrdxlP-dep_Trfase_major
MADD	8567	genome.wustl.edu	37	11	47303242	47303242	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003682.3	+1	reviewed	p.P469	0.945	258	0%	199	13.1%	4	50%	-	-	-	NULL
OR4C45	403257	genome.wustl.edu	37	11	48367508	48367508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000360720	-1	known	p.A104V	0.010	71	0%	68	23.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5F1	338674	genome.wustl.edu	37	11	55761459	55761459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003697.1	-1	provisional	p.L215F	0.001	75	0%	62	32.3%	0	-	probably_damaging(0.996)	tolerated(0.14)	deleterious(0.711)	HMMPfam_7tm_1,superfamily_SSF81321
P2RX3	5024	genome.wustl.edu	37	11	57106068	57106068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002559.2	+1	reviewed	p.S15L	0.999	398	0.5%	317	15.5%	0	-	probably_damaging(0.998)	tolerated(0.33)	deleterious(0.498)	HMMPfam_P2X_receptor
CTNND1	1500	genome.wustl.edu	37	11	57575861	57575861	+	Splice_Site	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085458.1	+1	validated	e12-1	1.000	197	0%	177	37.9%	0	-	-	-	-	-
OTUB1	55611	genome.wustl.edu	37	11	63764926	63764926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017670.2	+1	reviewed	p.G242S	1.000	70	0%	57	15.8%	295	23%	benign(0.001)	tolerated(0.81)	neutral(0.001)	HMMPfam_Peptidase_C65,superfamily_Cysteine proteinases
NDUFV1	4723	genome.wustl.edu	37	11	67378879	67378879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007103.3	+1	reviewed	p.V307I	1.000	63	0%	74	40.5%	208	39.9%	benign(0.065)	tolerated(0.36)	neutral(0.025)	HMMPfam_SLBB
ARAP1	116985	genome.wustl.edu	37	11	72437799	72437799	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040118.2	-1	reviewed	p.P125	0.039	13	0%	10	50%	1	100%	-	-	-	NULL
ARHGEF17	9828	genome.wustl.edu	37	11	73021494	73021494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014786.3	+1	validated	p.R604H	0.970	67	0%	85	23.5%	3	0%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
MTNR1B	4544	genome.wustl.edu	37	11	92714818	92714818	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005959.3	+1	reviewed	p.C143*	0.995	173	0%	229	13.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
DCUN1D5	84259	genome.wustl.edu	37	11	102953482	102953482	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032299.3	-1	validated	p.S112	1.000	231	0%	117	47.9%	7	85.7%	-	-	-	NULL
DDI1	414301	genome.wustl.edu	37	11	103908727	103908727	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001711.2	+1	validated	p.R393*	0.000	160	0%	96	36.5%	0	-	-	-	-	NULL
KBTBD3	143879	genome.wustl.edu	37	11	105924443	105924443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152433.3	-1	validated	p.P325S	0.959	162	0%	141	38.3%	0	-	benign(0)	tolerated(0.11)	neutral(0.272)	superfamily_Galactose oxidase central domain
TMPRSS13	84000	genome.wustl.edu	37	11	117784550	117784550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077263.1	-1	validated	p.S251G	0.999	71	0%	99	20.2%	0	-	probably_damaging(0.971)	tolerated(0.05)	deleterious(0.758)	HMMSmart_SM00202,superfamily_SRCR-like
ATP5L	10632	genome.wustl.edu	37	11	118277730	118277730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006476.4	+1	reviewed	p.A44V	1.000	391	0.3%	342	16.1%	1224	14.4%	benign(0.007)	deleterious(0.02)	neutral(0.383)	HMMPfam_ATP-synt_G
ARHGEF12	23365	genome.wustl.edu	37	11	120348879	120348879	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015313.1	+1	reviewed	p.L1183	0.987	206	0%	169	35.5%	6	33.3%	-	-	-	NULL
HSPA8	3312	genome.wustl.edu	37	11	122931330	122931330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006597.3	-1	reviewed	p.K128E	1.000	312	0%	232	37.5%	62	41.9%	possibly_damaging(0.916)	deleterious(0.01)	deleterious(0.772)	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
OPCML	4978	genome.wustl.edu	37	11	132399019	132399019	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002545.3	-1	reviewed	p.T154	0.988	157	0%	129	20.2%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
NCAPD3	23310	genome.wustl.edu	37	11	134064580	134064580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015261.2	-1	validated	p.V557I	1.000	237	0.4%	153	30.1%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_HEAT,superfamily_ARM-type_fold
RAD52	5893	genome.wustl.edu	37	12	1039020	1039020	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134424.2	-1	reviewed	p.V105fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Rad52_Rad22,superfamily_dsRNA-binding domain-like
CACNA1C	775	genome.wustl.edu	37	12	2224659	2224659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199460.2	+1	reviewed	p.L107M	1.000	27	0%	26	38.5%	0	-	possibly_damaging(0.481)	deleterious(0.03)	deleterious(0.524)	NULL
EFCAB4B	84766	genome.wustl.edu	37	12	3768748	3768748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144958.1	-1	validated	p.K248N	1.000	420	0%	334	21.6%	1	0%	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	NULL
LEPREL2	10536	genome.wustl.edu	37	12	6938023	6938024	+	Frame_Shift_Ins	INS	-	-	G	rs112583020	byCluster;by1000genomes	TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290510	+1	known	p.R141fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CDCA3	83461	genome.wustl.edu	37	12	6958831	6958831	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031299.4	-1	validated	p.Q148E	0.262	98	0%	66	43.9%	30	40%	possibly_damaging(0.933)	deleterious(0.04)	deleterious(0.728)	NULL
A2ML1	144568	genome.wustl.edu	37	12	8988222	8988222	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144670.3	+1	validated	p.A201	0.947	343	0%	302	16.9%	0	-	-	-	-	HMMPfam_A2M_N
GRIN2B	2904	genome.wustl.edu	37	12	13722946	13722946	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000834.3	-1	reviewed	p.L726R	1.000	103	0%	49	46.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
BICD1	636	genome.wustl.edu	37	12	32480565	32480565	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001714.2	+1	reviewed	p.D392	0.236	144	0%	126	38.1%	9	22.2%	-	-	-	HMMPfam_BicD
NCKAP5L	57701	genome.wustl.edu	37	12	50189409	50189409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037806.3	-1	validated	p.G745V	0.001	60	0%	39	23.1%	4	25%	benign(0.032)	deleterious(0.03)	neutral(0.366)	NULL
LARP4	113251	genome.wustl.edu	37	12	50869557	50869557	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199188.2	+1	validated	p.Q701	1.000	140	0%	119	12.6%	7	14.2%	-	-	-	NULL
STAT6	6778	genome.wustl.edu	37	12	57501513	57501513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003153.4	-1	reviewed	p.G44S	0.966	86	0%	66	42.4%	18	50%	probably_damaging(0.995)	tolerated(0.6)	neutral(0.462)	HMMPfam_STAT_int,superfamily_Transcription factor STAT-4 N-domain
HELB	92797	genome.wustl.edu	37	12	66712564	66712564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033647.2	+1	reviewed	p.H716R	0.043	322	0%	180	41.7%	0	-	benign(0.02)	tolerated(0.36)	neutral(0.021)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DYRK2	8445	genome.wustl.edu	37	12	68051906	68051906	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006482.2	+1	reviewed	p.S407C	1.000	136	0%	132	16.7%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PPFIA2	8499	genome.wustl.edu	37	12	81751977	81751977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003625.2	-1	reviewed	p.A553S	0.794	179	0%	130	39.2%	0	-	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
PPFIA2	8499	genome.wustl.edu	37	12	81768423	81768423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003625.2	-1	reviewed	p.A419V	1.000	277	0%	211	42.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMCC3	57458	genome.wustl.edu	37	12	94975997	94975999	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020698.2	-1	validated	p.K132in_frame_del	0.998:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Tmemb_cc2
MYBPC1	4604	genome.wustl.edu	37	12	102071162	102071162	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002465.2	+1	validated	p.I1033	0.617	209	0%	143	39.2%	0	-	-	-	-	superfamily_Fibronectin type III
NUP37	79023	genome.wustl.edu	37	12	102471111	102471111	+	Silent	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024057.2	-1	provisional	p.I237	0.994	232	0%	203	48.8%	27	59.2%	-	-	-	superfamily_WD40 repeat-like
POLR3B	55703	genome.wustl.edu	37	12	106895204	106895204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018082.5	+1	validated	p.V1030I	1.000	133	0.8%	91	13.2%	9	0%	benign(0.004)	tolerated(0.69)	neutral(0.002)	HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
PPTC7	160760	genome.wustl.edu	37	12	110975949	110975949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139283.1	-1	provisional	p.G286C	1.000	174	0.6%	156	21.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PP2C_SIG,HMMSmart_PP2Cc,superfamily_PP2C-related,HMMPfam_SpoIIE
LHX5	64211	genome.wustl.edu	37	12	113901242	113901242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022363.2	-1	reviewed	p.T321K	1.000	14	0%	15	60%	0	-	possibly_damaging(0.947)	tolerated(0.06)	deleterious(0.713)	NULL
RNF34	80196	genome.wustl.edu	37	12	121858458	121858458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194271.1	+1	reviewed	p.V270M	1.000	204	0%	172	24.4%	6	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ORAI1	84876	genome.wustl.edu	37	12	122079446	122079446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032790.3	+1	reviewed	p.R268Q	1.000	60	1.7%	72	15.3%	14	14.2%	probably_damaging(0.997)	tolerated(0.12)	deleterious(0.727)	HMMPfam_DUF1650
SETD1B	23067	genome.wustl.edu	37	12	122242663	122242663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015048.1	+1	validated	p.P7H	1.000	71	0%	58	13.8%	2	0%	unknown(0)	-	-	NULL
B3GNT4	79369	genome.wustl.edu	37	12	122691586	122691587	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030765.2	+1	reviewed	p.P264fs	1.000:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_Galactosyl_T
WASF3	10810	genome.wustl.edu	37	13	27246014	27246014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006646.5	+1	reviewed	p.D143G	1.000	194	0%	135	39.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
KIAA0564	23078	genome.wustl.edu	37	13	42164826	42164826	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015058.1	-1	validated	p.L1688	0.999	349	0%	287	17.1%	4	0%	-	-	-	NULL
FAM124A	220108	genome.wustl.edu	37	13	51805511	51805511	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145019.2	+1	predicted	p.T32	1.000	356	0%	266	35.3%	2	100%	-	-	-	NULL
OLFM4	10562	genome.wustl.edu	37	13	53617301	53617301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006418.3	+1	reviewed	p.A211V	0.826	238	0%	149	40.3%	2	50%	benign(0.016)	tolerated(0.56)	neutral(0.007)	NULL
LMO7	4008	genome.wustl.edu	37	13	76382253	76382253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015842.2	+1	reviewed	p.C379R	1.000	131	0%	137	38%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
GPR18	2841	genome.wustl.edu	37	13	99907488	99907488	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098200.1	-1	validated	p.N213K	0.991	225	0%	214	18.7%	0	-	benign(0.048)	deleterious(0.01)	neutral(0.409)	HMMPfam_7tm_1,superfamily_SSF81321
NALCN	259232	genome.wustl.edu	37	13	101795468	101795468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052867.2	-1	validated	p.R694H	0.998	655	0.2%	532	37.6%	0	-	probably_damaging(0.991)	tolerated(0.07)	deleterious(0.763)	NULL
LOC643677	643677	genome.wustl.edu	37	13	103392159	103392159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.I3559V	0.001	475	0%	333	39.3%	0	-	-	-	-	NULL
COL4A2	1284	genome.wustl.edu	37	13	111141854	111141854	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001846.2	+1	reviewed	p.F1090	0.000	215	0%	257	39.3%	25	40%	-	-	-	HMMPfam_Collagen
ARHGEF7	8874	genome.wustl.edu	37	13	111870209	111870209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113511.1	+1	reviewed	p.R239C	1.000	79	0%	85	35.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
MCF2L	23263	genome.wustl.edu	37	13	113719271	113719271	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112732.1	+1	validated	p.M267V	0.996	81	1.2%	98	18.4%	10	20%	benign(0.001)	tolerated(0.37)	neutral(0.019)	NULL
ABHD4	63874	genome.wustl.edu	37	14	23075425	23075425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428304	+1	known	p.T273M	0.636	229	0%	177	13%	7	0%	-	-	-	NULL
LOC100288791	100288791	genome.wustl.edu	37	14	23311679	23311679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343265.1	-1	model	p.R213C	0.992	62	0%	83	38.6%	5	40%	-	-	-	NULL
RBM23	55147	genome.wustl.edu	37	14	23374595	23374595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077351.1	-1	reviewed	p.A175T	1.000	117	0%	117	39.3%	5	40%	benign(0.013)	tolerated(0.17)	neutral(0.059)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
JPH4	84502	genome.wustl.edu	37	14	24046490	24046490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032452.2	-1	reviewed	p.G58E	1.000	12	0.000	8	0.500	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MORN,superfamily_SSF82185
KIAA0391	9692	genome.wustl.edu	37	14	35596684	35596684	+	Splice_Site	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014672.2	+1	provisional	e3-1	1.000	116	0%	78	37.2%	1	100%	-	-	-	-
SSTR1	6751	genome.wustl.edu	37	14	38678630	38678630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455187	+1	known	p.L108I	1.000	44	0%	35	11.4%	0	-	-	-	-	NULL
PYGL	5836	genome.wustl.edu	37	14	51410917	51410917	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002863.4	-1	reviewed	p.I69F	1.000	53	0%	61	13.1%	9	0%	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	superfamily_SSF53756
TMX1	81542	genome.wustl.edu	37	14	51707068	51707068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030755.4	+1	validated	p.G20C	0.004	102	0%	116	40.5%	5	40%	unknown(0)	tolerated(0.06)	-	NULL
BMP4	652	genome.wustl.edu	37	14	54417120	54417120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001202.3	-1	reviewed	p.R286Q	0.995	47	0%	45	13.3%	23	30.4%	benign(0.003)	tolerated(0.11)	neutral(0.272)	NULL
SLC35F4	341880	genome.wustl.edu	37	14	58038642	58038642	+	Silent	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080455.1	-1	provisional	p.V337	0.980	195	0%	135	46.7%	0	-	-	-	-	NULL
DPF3	8110	genome.wustl.edu	37	14	73181177	73181177	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012074.3	-1	provisional	p.H186	0.981	96	0%	77	44.2%	0	-	-	-	-	NULL
C14orf102	55051	genome.wustl.edu	37	14	90767598	90767598	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017970.2	-1	validated	p.L510	0.995	166	0.6%	141	14.2%	1	100%	-	-	-	HMMPfam_DUF1740,superfamily_Prenyl_trans
DICER1	23405	genome.wustl.edu	37	14	95557604	95557604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030621.3	-1	reviewed	p.M1821I	1.000	312	0%	269	41.3%	13	7.6%	possibly_damaging(0.552)	deleterious(0.01)	deleterious(0.594)	HMMPfam_Ribonuclease_3,HMMSmart_RIBOc,superfamily_RNase_III
DICER1	23405	genome.wustl.edu	37	14	95560464	95560464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030621.3	-1	reviewed	p.D1709N	1.000	104	0%	96	39.6%	8	50%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Ribonuclease_3,HMMSmart_RIBOc,PatternScan_RNASE_3_1,superfamily_RNase_III
WDR25	79446	genome.wustl.edu	37	14	100934379	100934379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024515.4	+1	validated	p.G282R	0.959	112	0%	88	13.6%	4	25%	possibly_damaging(0.676)	tolerated(0.62)	neutral(0.244)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DYNC1H1	1778	genome.wustl.edu	37	14	102452738	102452738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001376.4	+1	reviewed	p.R726W	0.968	108	0%	117	17.1%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_DHC_N1
MOK	5891	genome.wustl.edu	37	14	102732208	102732208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014226.1	-1	provisional	p.R55M	1.000	479	0%	388	21.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
AKT1	207	genome.wustl.edu	37	14	105242084	105242084	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014431.1	-1	reviewed	p.E114Q	1.000	149	0%	164	13.4%	23	13%	benign(0.008)	tolerated(0.43)	neutral(0.013)	superfamily_PH domain-like
AHNAK2	113146	genome.wustl.edu	37	14	105407769	105407769	+	Silent	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.H4673	0.001	60	0%	51	51%	1	0%	-	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105414444	105414444	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.S2448	0.000	259	0%	236	19.1%	0	-	-	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105418659	105418659	+	Silent	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.T1043	0.000	182	0%	243	21.4%	1	100%	-	-	-	NULL
MTA1	9112	genome.wustl.edu	37	14	105931019	105931019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004689.3	+1	reviewed	p.H451Q	0.997	18	0%	27	48.1%	99	40.4%	benign(0.039)	tolerated(0.16)	neutral(0.061)	superfamily_Glucocorticoid receptor-like (DNA-binding domain)
IGHM	3507	genome.wustl.edu	37	14	106321875	106321875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000496208	-1	known	p.R119H	0.019	19	0%	38	42.1%	3	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_C1-set,superfamily_Immunoglobulin
ENSG00000229584	0	genome.wustl.edu	37	15	21369460	21369460	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000450252	+1	known	p.V39M	1.000	189	0%	178	41.6%	0	-	-	-	-	HMMPfam_DUF663
HERC2	8924	genome.wustl.edu	37	15	28424159	28424159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.V3013M	1.000	68	0%	68	13.2%	1	0%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	HMMPfam_RCC1,HMMSmart_SM00706,superfamily_RCC1/BLIP-II
ENSG00000221138	0	genome.wustl.edu	37	15	33256249	33256249	+	RNA	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408211	-1	novel	NULL	0.013	220	0.5%	176	29%	0	-	-	-	-	-
ACTC1	70	genome.wustl.edu	37	15	35086985	35086985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005159.4	-1	reviewed	p.A9T	1.000	40	0%	37	40.5%	0	-	benign(0.264)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
FAM82A2	55177	genome.wustl.edu	37	15	41036319	41036319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018145.1	-1	provisional	p.R279H	1.000	103	0%	107	19.6%	27	25.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OIP5	11339	genome.wustl.edu	37	15	41624506	41624506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007280.1	-1	provisional	p.A85V	0.923	26	0%	27	40.7%	4	50%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
PLA2G4D	283748	genome.wustl.edu	37	15	42362241	42362241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178034.3	-1	validated	p.R699Q	0.005	39	0%	42	45.2%	0	-	benign(0.072)	tolerated(0.21)	neutral(0.049)	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
CDAN1	146059	genome.wustl.edu	37	15	43022811	43022811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138477.2	-1	reviewed	p.L720P	1.000	73	0%	72	34.7%	16	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TUBGCP4	27229	genome.wustl.edu	37	15	43690301	43690301	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014444.2	+1	provisional	p.G448R	1.000	239	0%	163	18.4%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Spc97_Spc98
DUOX1	53905	genome.wustl.edu	37	15	45428784	45428784	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017434.3	+1	reviewed	p.Q328R	1.000	174	0%	154	42.2%	2	0%	benign(0.01)	tolerated(1)	neutral(0.001)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
AP4E1	23431	genome.wustl.edu	37	15	51285771	51285771	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007347.3	+1	validated	p.L765	1.000	293	0%	229	22.7%	0	-	-	-	-	NULL
ALDH1A2	8854	genome.wustl.edu	37	15	58357778	58357778	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003888.2	-1	reviewed	p.H24L	1.000	48	0%	48	10.4%	0	-	benign(0.009)	tolerated(0.41)	neutral(0.015)	superfamily_ALDH-like
HERC1	8925	genome.wustl.edu	37	15	63955325	63955325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.A2920V	1.000	288	0%	272	20.2%	0	-	possibly_damaging(0.643)	-	-	NULL
AP3B2	8120	genome.wustl.edu	37	15	83346489	83346489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004644.3	-1	validated	p.T438A	1.000	78	0%	80	15%	1	0%	benign(0.012)	tolerated(0.42)	neutral(0.015)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
WHAMM	123720	genome.wustl.edu	37	15	83499641	83499641	+	Silent	SNP	T	T	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080435.1	+1	provisional	p.P644	0.000	47	0%	31	25.8%	3	66.6%	-	-	-	NULL
BTBD1	53339	genome.wustl.edu	37	15	83698937	83698937	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025238.3	-1	reviewed	p.Q336*	1.000	365	0%	296	38.2%	4	50%	-	-	-	HMMPfam_PHR
NTRK3	4916	genome.wustl.edu	37	15	88576150	88576150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012338.1	-1	reviewed	p.I508T	1.000	56	0%	74	41.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZNF710	374655	genome.wustl.edu	37	15	90610437	90610437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198526.2	+1	validated	p.A23V	1.000	29	0%	48	25%	4	25%	possibly_damaging(0.515)	deleterious(0)	deleterious(0.618)	NULL
LRRK1	79705	genome.wustl.edu	37	15	101606112	101606112	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024652.3	+1	validated	p.L1824	1.000	104	0%	113	47.8%	2	100%	-	-	-	NULL
MPG	4350	genome.wustl.edu	37	16	129665	129665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002434.2	+1	validated	p.P94L	0.998	84	0%	83	44.6%	57	43.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Pur_DNA_glyco,superfamily_FMT C-terminal domain-like
FBXL16	146330	genome.wustl.edu	37	16	745727	745727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153350.3	-1	validated	p.A277V	1.000	12	0%	29	24.1%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_SSF52047
RPUSD1	113000	genome.wustl.edu	37	16	836267	836267	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058192.2	-1	validated	p.L208	1.000	45	0%	38	55.3%	32	53.1%	-	-	-	superfamily_PsdUridine_synth_cat_dom
IFT140	9742	genome.wustl.edu	37	16	1608121	1608121	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014714.3	-1	validated	p.D738	0.000	238	0%	210	33.8%	3	66.6%	-	-	-	NULL
IFT140	9742	genome.wustl.edu	37	16	1657237	1657237	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014714.3	-1	validated	p.A11T	0.999	289	0%	233	44.2%	3	66.6%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
CCDC64B	146439	genome.wustl.edu	37	16	3079571	3079571	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103175.1	-1	validated	p.G311A	0.000	24	0%	33	33.3%	44	40.9%	benign(0)	tolerated(0.76)	neutral(0.001)	NULL
NUDT16L1	84309	genome.wustl.edu	37	16	4744991	4744991	+	Silent	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032349.2	+1	provisional	p.T149	1.000	49	0%	32	21.9%	52	40.3%	-	-	-	NULL
ANKS3	124401	genome.wustl.edu	37	16	4776997	4776997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133450.2	-1	provisional	p.A118T	1.000	87	0%	93	14%	6	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
KIAA0430	9665	genome.wustl.edu	37	16	15718925	15718925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014647.3	-1	validated	p.S687P	0.033	179	0%	177	37.9%	0	-	benign(0)	tolerated(1)	-	NULL
GDE1	51573	genome.wustl.edu	37	16	19528400	19528400	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016641.3	-1	validated	p.R125*	0.038	383	0%	276	18.1%	7	0%	-	-	-	HMMPfam_GDPD,superfamily_PLC-like_Pdiesterase_TIM-brl
IL21R	50615	genome.wustl.edu	37	16	27456580	27456580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021798.2	+1	reviewed	p.K256N	0.457	305	0%	267	41.6%	0	-	benign(0.386)	tolerated(0.19)	neutral(0.173)	NULL
GTF3C1	2975	genome.wustl.edu	37	16	27514202	27514202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001520.3	-1	validated	p.R629C	1.000	427	0%	495	37.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SULT1A1	6817	genome.wustl.edu	37	16	28617472	28617472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001055.2	-1	reviewed	p.T227M	0.531	498	0%	438	17.6%	24	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
RABEP2	79874	genome.wustl.edu	37	16	28922223	28922223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024816.2	-1	validated	p.V359L	0.998	39	0%	32	25%	51	35.2%	possibly_damaging(0.751)	deleterious(0.01)	deleterious(0.681)	HMMPfam_Rab5-bind
RNF40	9810	genome.wustl.edu	37	16	30779624	30779624	+	Silent	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014771.2	+1	reviewed	p.P584	0.000	40	0%	40	40%	17	23.5%	-	-	-	NULL
FBXL19	54620	genome.wustl.edu	37	16	30939115	30939115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099784.2	+1	provisional	p.G173D	0.975	18	0%	25	36%	13	69.2%	probably_damaging(0.999)	tolerated(0.62)	deleterious(0.494)	NULL
ABCC11	85320	genome.wustl.edu	37	16	48226588	48226588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032583.3	-1	reviewed	p.L850P	0.002	257	0%	282	33%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
BRD7	29117	genome.wustl.edu	37	16	50354601	50354601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013263.3	-1	validated	p.V529I	0.001	303	0.7%	237	19%	45	13.3%	benign(0)	tolerated(1)	-	NULL
NDRG4	65009	genome.wustl.edu	37	16	58540891	58540891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130487.1	+1	reviewed	p.L250M	1.000	159	0%	140	32.1%	12	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ndr,superfamily_SSF53474
CNOT1	23019	genome.wustl.edu	37	16	58620486	58620486	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016284.3	-1	validated	p.Q200H	1.000	303	0%	202	36.6%	3	66.6%	possibly_damaging(0.481)	tolerated(0.12)	neutral(0.420)	NULL
CDH11	1009	genome.wustl.edu	37	16	64984701	64984701	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001797.2	-1	reviewed	p.I621	0.689	42	0%	44	40.9%	13	30.7%	-	-	-	NULL
CDH11	1009	genome.wustl.edu	37	16	64984749	64984749	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001797.2	-1	reviewed	p.N605	0.843	67	0%	64	39.1%	12	58.3%	-	-	-	NULL
ENSG00000250685	0	genome.wustl.edu	37	16	65345433	65345433	+	RNA	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505989	-1	known	NULL	0.000	280	0%	216	21.3%	0	-	-	-	-	-
PKD1L3	342372	genome.wustl.edu	37	16	71976675	71976675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000335106	-1	known	p.R1369H	0.000	216	0%	178	42.1%	0	-	-	-	-	NULL
PSMD7	5713	genome.wustl.edu	37	16	74338294	74338294	+	Splice_Site	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002811.3	+1	reviewed	e6+2	1.000	255	0.4%	217	13.4%	8	87.5%	-	-	-	-
PKD1L2	114780	genome.wustl.edu	37	16	81190627	81190627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052892.3	-1	reviewed	p.T1321M	0.916	90	0%	117	29.9%	0	-	probably_damaging(0.96)	deleterious(0.01)	deleterious(0.808)	HMMPfam_GPS,HMMSmart_SM00303
MBTPS1	8720	genome.wustl.edu	37	16	84088084	84088084	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003791.2	-1	reviewed	p.Q1043H	0.998	77	0%	95	43.2%	145	35.1%	benign(0.165)	deleterious(0.02)	neutral(0.398)	NULL
APRT	353	genome.wustl.edu	37	16	88876490	88876490	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000485.2	-1	reviewed	p.L130	0.994	77	0%	88	37.5%	564	37.7%	-	-	-	HMMPfam_Pribosyltran,PatternScan_PUR_PYR_PR_TRANSFER,superfamily_SSF53271
ANKRD11	29123	genome.wustl.edu	37	16	89349717	89349717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013275.4	-1	validated	p.A1078V	0.000	414	0.2%	303	37.6%	3	33.3%	benign(0.108)	tolerated(0.06)	neutral(0.331)	superfamily_Ankyrin repeat
SCARF1	8578	genome.wustl.edu	37	17	1538759	1538759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003693.2	-1	reviewed	p.T596A	1.000	65	0%	74	21.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PRPF8	10594	genome.wustl.edu	37	17	1555073	1555073	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006445.3	-1	reviewed	p.Y2127N	0.999	73	0%	47	36.2%	73	34.2%	possibly_damaging(0.744)	deleterious(0)	deleterious(0.718)	HMMPfam_Mov34,HMMSmart_SM00232
P2RX1	5023	genome.wustl.edu	37	17	3806568	3806568	+	Silent	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002558.2	-1	reviewed	p.P225	0.120	143	0%	116	38.8%	0	-	-	-	-	HMMPfam_P2X_receptor
GGT6	124975	genome.wustl.edu	37	17	4461937	4461937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122890.1	-1	validated	p.E285D	0.015	21	0%	25	36%	2	0%	possibly_damaging(0.621)	tolerated(0.27)	neutral(0.250)	HMMPfam_G_glu_transpept
SPAG7	9552	genome.wustl.edu	37	17	4863371	4863371	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004890.2	-1	validated	p.Y121	1.000	104	0%	69	29%	125	49.6%	-	-	-	NULL
TEKT1	83659	genome.wustl.edu	37	17	6722627	6722627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053285.1	-1	reviewed	p.L81F	1.000	338	0%	261	36%	0	-	benign(0.091)	tolerated(0.13)	neutral(0.259)	HMMPfam_Tektin
ZBTB4	57659	genome.wustl.edu	37	17	7365389	7365389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128833.1	-1	validated	p.A971V	1.000	89	0%	99	20.2%	4	25%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
ARHGEF15	22899	genome.wustl.edu	37	17	8216418	8216418	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173728.2	+1	reviewed	p.A260	0.079	76	0%	83	26.5%	0	-	-	-	-	NULL
FAM211A	388341	genome.wustl.edu	37	17	16347111	16347113	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113567.1	-1	validated	p.F275in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_RNI-like
LLGL1	3996	genome.wustl.edu	37	17	18137422	18137422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004140.3	+1	reviewed	p.S216N	1.000	37	0%	34	41.2%	0	-	possibly_damaging(0.916)	tolerated(1)	neutral(0.367)	HMMSmart_SM00320,superfamily_WD40 repeat-like
SPAG5	10615	genome.wustl.edu	37	17	26919653	26919656	+	Frame_Shift_Del	DEL	CTCT	CTCT	-	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	CTCT	CTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006461.3	-1	reviewed	p.E203fs	0.002:0.004:0.004:0.000	-	-	-	-	-	-	-	-	-	NULL
SUPT6H	6830	genome.wustl.edu	37	17	27023865	27023865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003170.3	+1	validated	p.Y1325C	1.000	140	0%	145	42.1%	25	52%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Nucleic acid-binding proteins
SUPT6H	6830	genome.wustl.edu	37	17	27027980	27027980	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003170.3	+1	validated	p.Q1610*	1.000	459	0.2%	443	14.4%	118	5%	-	-	-	NULL
BLMH	642	genome.wustl.edu	37	17	28598322	28598322	+	Silent	SNP	G	G	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000386.2	-1	reviewed	p.T371	1.000	253	0%	223	37.2%	35	42.8%	-	-	-	HMMPfam_Peptidase_C1_2,superfamily_Cysteine proteinases
NLE1	54475	genome.wustl.edu	37	17	33466960	33466960	+	Silent	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018096.3	-1	validated	p.A96	1.000	166	0%	123	15.4%	10	30%	-	-	-	NULL
KRT38	8687	genome.wustl.edu	37	17	39594442	39594442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006771.3	-1	reviewed	p.R382W	1.000	209	0%	178	42.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT13	3860	genome.wustl.edu	37	17	39661598	39661598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153490.2	-1	reviewed	p.L69F	0.000	639	0.2%	673	18.1%	1	0%	unknown(0)	tolerated(0.24)	-	NULL
JUP	3728	genome.wustl.edu	37	17	39914006	39914006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002230.2	-1	reviewed	p.R602C	1.000	22	0%	16	62.5%	151	41%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Arm,HMMSmart_ARM,superfamily_ARM-type_fold
JUP	3728	genome.wustl.edu	37	17	39914743	39914743	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002230.2	-1	reviewed	p.E561*	1.000	55	0%	38	18.4%	114	1.7%	-	-	-	HMMSmart_ARM,superfamily_ARM-type_fold
FKBP10	60681	genome.wustl.edu	37	17	39978051	39978051	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455106	+1	known	p.A319V	0.870	140	0%	128	35.2%	208	44.7%	-	-	-	HMMSmart_SM00054,superfamily_EF-hand
SLC4A1	6521	genome.wustl.edu	37	17	42328916	42328916	+	Silent	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000342.3	-1	reviewed	p.P784	0.910	172	0%	157	28.7%	0	-	-	-	-	HMMPfam_HCO3_cotransp
COL1A1	1277	genome.wustl.edu	37	17	48264078	48264078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000088.3	-1	reviewed	p.R1246Q	1.000	92	0%	95	43.2%	340	5.5%	unknown(0)	tolerated(0.22)	-	HMMPfam_COLFI,HMMSmart_SM00038
SPAG9	9043	genome.wustl.edu	37	17	49060027	49060027	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130528.2	-1	reviewed	p.Q1032R	1.000	174	0%	116	36.2%	4	50%	benign(0.378)	deleterious(0)	deleterious(0.565)	superfamily_WD40 repeat-like
HLF	3131	genome.wustl.edu	37	17	53398155	53398155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002126.4	+1	reviewed	p.R268H	1.000	41	0%	42	50%	0	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMSmart_SM00338,HMMPfam_bZIP_2
CUEDC1	404093	genome.wustl.edu	37	17	55962643	55962643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017949.1	-1	provisional	p.S95G	0.358	12	0%	16	37.5%	4	25%	benign(0.009)	tolerated(0.18)	neutral(0.057)	NULL
EPX	8288	genome.wustl.edu	37	17	56281654	56281654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000502.4	+1	reviewed	p.R673Q	1.000	177	0%	156	10.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_An_peroxidase,superfamily_Peroxidase_super
SKA2	348235	genome.wustl.edu	37	17	57189646	57189646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182620.3	-1	validated	p.D120N	0.230	355	0%	200	42%	78	62.8%	benign(0.004)	tolerated(0.21)	neutral(0.044)	NULL
TEX2	55852	genome.wustl.edu	37	17	62290759	62290759	+	Silent	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018469.3	-1	validated	p.D273	0.936	339	0%	304	16.4%	3	0%	-	-	-	PatternScan_PTS_HPR_SER
ABCA6	23460	genome.wustl.edu	37	17	67079406	67079406	+	Silent	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080284.2	-1	reviewed	p.A1474	0.932	132	0%	109	26.6%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
SDK2	54549	genome.wustl.edu	37	17	71412109	71412109	+	Missense_Mutation	SNP	C	C	T	rs34004346		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144952.1	-1	provisional	p.V737M	0.997	103	0%	99	41.4%	0	-	possibly_damaging(0.876)	tolerated(0.23)	neutral(0.383)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
NAT9	26151	genome.wustl.edu	37	17	72767970	72767972	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015654.3	-1	provisional	p.E172in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
GALK1	2584	genome.wustl.edu	37	17	73754366	73754366	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000154.1	-1	reviewed	p.T344	0.020	14	0%	15	60%	59	35.5%	-	-	-	HMMPfam_GHMP_kinases_C,superfamily_SSF55060
MYOM1	8736	genome.wustl.edu	37	18	3129401	3129401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003803.3	-1	reviewed	p.L875F	0.976	350	0%	368	45.4%	0	-	benign(0.167)	tolerated(0.37)	neutral(0.034)	NULL
KCTD1	284252	genome.wustl.edu	37	18	24081111	24081111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142730.1	-1	validated	p.A638V	1.000	529	0%	525	18.7%	15	6.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00225,superfamily_POZ domain
TPGS2	25941	genome.wustl.edu	37	18	34378420	34378420	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015476.2	-1	provisional	p.Q217*	1.000	169	0%	177	20.9%	79	22.7%	-	-	-	NULL
MYO5B	4645	genome.wustl.edu	37	18	47581652	47581652	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080467.2	-1	reviewed	p.L42	0.976	159	0%	121	14.9%	1	100%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
TNFRSF11A	8792	genome.wustl.edu	37	18	60036265	60036265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003839.2	+1	reviewed	p.P372H	0.572	71	0%	92	16.3%	0	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
CSNK1G2	1455	genome.wustl.edu	37	19	1978629	1978629	+	Silent	SNP	T	T	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001319.6	+1	validated	p.G109	0.989	24	0%	20	50%	61	42.6%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CCDC94	55702	genome.wustl.edu	37	19	4258395	4258395	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018074.4	+1	provisional	p.Q188E	1.000	17	0%	20	35%	24	12.5%	benign(0)	tolerated(1)	-	HMMPfam_DUF572
CHAF1A	10036	genome.wustl.edu	37	19	4409305	4409305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005483.2	+1	validated	p.A170V	0.000	186	0%	166	33.1%	6	0%	unknown(0)	tolerated(0.39)	-	NULL
MLLT1	4298	genome.wustl.edu	37	19	6222272	6222274	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005934.3	-1	validated	p.S323in_frame_del	0.643:0.503:0.456	-	-	-	-	-	-	-	-	-	NULL
ZNF557	79230	genome.wustl.edu	37	19	7083552	7083552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044387.1	+1	validated	p.T364A	0.005	211	0%	147	31.3%	0	-	possibly_damaging(0.638)	tolerated(0.35)	neutral(0.244)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ARHGEF18	23370	genome.wustl.edu	37	19	7509211	7509211	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130955.1	+1	reviewed	p.C306	0.001	44	0%	65	43.1%	13	61.5%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
OR7E24	26648	genome.wustl.edu	37	19	9362610	9362610	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079935.1	+1	provisional	p.T297	0.080	181	0%	182	42.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF699	374879	genome.wustl.edu	37	19	9408089	9408089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198535.1	-1	provisional	p.S118F	0.003	281	0.4%	153	15.7%	0	-	probably_damaging(0.982)	tolerated(0.68)	neutral(0.428)	NULL
ZNF561	93134	genome.wustl.edu	37	19	9727721	9727721	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152289.2	-1	validated	p.E81*	0.026	325	0%	294	10.5%	8	0%	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
OLFM2	93145	genome.wustl.edu	37	19	9965221	9965221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058164.2	-1	provisional	p.Y336H	1.000	46	0%	52	44.2%	16	25%	possibly_damaging(0.705)	tolerated(0.06)	deleterious(0.577)	HMMPfam_OLF,HMMSmart_OLF
DOCK6	57572	genome.wustl.edu	37	19	11323926	11323926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020812.2	-1	validated	p.R1473C	1.000	36	0%	27	59.3%	12	33.3%	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
ZNF878	729747	genome.wustl.edu	37	19	12167108	12167108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080404.1	-1	inferred	p.S7F	0.011	123	0%	99	11.1%	0	-	unknown(0)	-	-	NULL
ZNF564	163050	genome.wustl.edu	37	19	12638197	12638197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144976.3	-1	validated	p.R242K	0.001	322	0%	262	42.4%	1	0%	benign(0.003)	tolerated(0.4)	neutral(0.016)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MAST1	22983	genome.wustl.edu	37	19	12969354	12969354	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014975.2	+1	validated	p.Y389	1.000	81	0%	116	18.1%	12	25%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
LYL1	4066	genome.wustl.edu	37	19	13211811	13211811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005583.3	-1	provisional	p.G59S	0.063	41	0%	20	30%	2	50%	possibly_damaging(0.949)	tolerated(0.24)	neutral(0.430)	NULL
CACNA1A	773	genome.wustl.edu	37	19	13318811	13318811	+	Silent	SNP	C	C	T	rs147221323	by1000genomes	TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127222.1	-1	reviewed	p.P2279	0.984	4	0.000	9	0.556	0	-	-	-	-	NULL
MIR27A	407018	genome.wustl.edu	37	19	13947262	13947262	+	RNA	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385073	-1	known	NULL	1.000	60	0%	80	36.2%	1	0%	-	-	-	-
LPHN1	22859	genome.wustl.edu	37	19	14270975	14270975	+	Silent	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008701.2	-1	reviewed	p.L588	0.951	43	2.3%	36	33.3%	6	16.6%	-	-	-	NULL
CYP4F22	126410	genome.wustl.edu	37	19	15636258	15636258	+	Silent	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173483.3	+1	reviewed	p.R37	0.776	157	0%	165	40.6%	0	-	-	-	-	NULL
AP1M1	8907	genome.wustl.edu	37	19	16314297	16314297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130524.1	+1	reviewed	p.D24N	1.000	249	0%	232	13.4%	6	16.6%	benign(0.108)	deleterious(0.02)	neutral(0.392)	superfamily_Longin_like
UNC13A	23025	genome.wustl.edu	37	19	17728529	17728529	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080421.2	-1	validated	p.Q1602*	1.000	120	0%	127	34.6%	1	100%	-	-	-	NULL
HOMER3	9454	genome.wustl.edu	37	19	19042848	19042848	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145722.1	-1	reviewed	p.A209	0.187	20	0%	17	29.4%	92	29.3%	-	-	-	NULL
SUGP2	10147	genome.wustl.edu	37	19	19115232	19115232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017392.3	-1	reviewed	p.P892S	0.982	79	0%	105	12.4%	24	20.8%	probably_damaging(0.998)	tolerated(0.48)	deleterious(0.485)	NULL
NCAN	1463	genome.wustl.edu	37	19	19356268	19356268	+	Splice_Site	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004386.2	+1	validated	e12+2	0.999	154	0%	169	36.7%	0	-	-	-	-	-
ANKRD27	84079	genome.wustl.edu	37	19	33113417	33113417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032139.2	-1	validated	p.V580I	1.000	189	0%	181	20.4%	2	0%	benign(0)	tolerated(1)	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
RHPN2	85415	genome.wustl.edu	37	19	33481510	33481510	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033103.4	-1	reviewed	p.T570	0.300	132	0%	164	48.8%	8	25%	-	-	-	HMMSmart_PDZ,superfamily_PDZ
RHPN2	85415	genome.wustl.edu	37	19	33487112	33487112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033103.4	-1	reviewed	p.R414C	0.760	32	0%	45	24.4%	1	0%	benign(0.019)	tolerated(0.06)	neutral(0.324)	HMMPfam_BRO1
IGFLR1	79713	genome.wustl.edu	37	19	36230612	36230612	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024660.2	-1	provisional	p.R240	0.000	61	0%	40	50%	12	25%	-	-	-	NULL
ARHGAP33	115703	genome.wustl.edu	37	19	36277869	36277869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052948.3	+1	reviewed	p.R672C	0.236	17	0%	10	50%	13	30.7%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
ECH1	1891	genome.wustl.edu	37	19	39306966	39306966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001398.2	-1	reviewed	p.R230H	1.000	35	0%	56	17.9%	375	14.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ECH,superfamily_SSF52096
PLEKHG2	64857	genome.wustl.edu	37	19	39911931	39911931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022835.2	+1	validated	p.G499R	0.009	428	0%	345	40%	14	35.7%	benign(0)	tolerated(1)	-	NULL
SPTBN4	57731	genome.wustl.edu	37	19	41060255	41060255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020971.2	+1	reviewed	p.Y1626C	1.000	35	0%	50	48%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
CYP2B7P1	1556	genome.wustl.edu	37	19	41430281	41430281	+	RNA	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_001278.1	+1	provisional	NULL	0.012	95	0%	66	37.9%	0	-	benign(0.011)	deleterious(0.04)	neutral(0.349)	-
TMEM145	284339	genome.wustl.edu	37	19	42818848	42818848	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173633.2	+1	validated	p.C119	1.000	90	0%	96	35.4%	0	-	-	-	-	NULL
CADM4	199731	genome.wustl.edu	37	19	44129246	44129246	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145296.1	-1	validated	p.Y304	0.988	31	0%	52	38.5%	69	53.6%	-	-	-	HMMPfam_I-set,superfamily_SSF48726
SYMPK	8189	genome.wustl.edu	37	19	46330795	46330797	+	In_Frame_Del	DEL	GAG	GAG	-	rs189256616	by1000genomes	TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004819.2	-1	reviewed	p.L718in_frame_del	0.848:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_ARM repeat
PRKD2	25865	genome.wustl.edu	37	19	47201006	47201006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079880.1	-1	reviewed	p.S408N	1.000	25	0%	39	41%	29	51.7%	benign(0.005)	deleterious(0)	neutral(0.445)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ZC3H4	23211	genome.wustl.edu	37	19	47597290	47597290	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015168.1	-1	validated	p.S143	0.052	138	0%	123	13%	5	0%	-	-	-	NULL
MYH14	79784	genome.wustl.edu	37	19	50713973	50713973	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077186.1	+1	reviewed	p.N117	1.000	32	0%	47	44.7%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
KLK15	55554	genome.wustl.edu	37	19	51329987	51329987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017509.2	-1	reviewed	p.A170T	1.000	174	0%	150	34.7%	0	-	possibly_damaging(0.521)	tolerated(0.18)	neutral(0.231)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ZNF320	162967	genome.wustl.edu	37	19	53384627	53384627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207333.2	-1	validated	p.G251D	0.997	329	0%	257	16.3%	2	0%	benign(0.004)	tolerated(0.15)	neutral(0.241)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF813	126017	genome.wustl.edu	37	19	53987090	53987090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004301.3	+1	validated	p.Q5R	0.019	741	0%	761	14.7%	2	0%	possibly_damaging(0.909)	tolerated(0.11)	deleterious(0.633)	superfamily_Krueppel-associated_box
RPL28	6158	genome.wustl.edu	37	19	55899311	55899311	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136135.1	+1	reviewed	p.P73	0.876	71	0%	75	53.3%	8083	49.3%	-	-	-	HMMPfam_Ribosomal_L28e
ZNF667	63934	genome.wustl.edu	37	19	56952552	56952552	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022103.3	-1	validated	p.T604	0.271	199	0%	141	22%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF548	147694	genome.wustl.edu	37	19	57910278	57910278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152909.3	+1	validated	p.C208Y	0.000	166	0%	137	40.9%	0	-	benign(0)	tolerated(0.69)	neutral(0.002)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SLC4A11	83959	genome.wustl.edu	37	20	3210407	3210407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032034.3	-1	reviewed	p.Y518C	0.992	165	0%	154	35.7%	5	20%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_HCO3_cotransp
ATRN	8455	genome.wustl.edu	37	20	3565436	3565436	+	Silent	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139321.2	+1	reviewed	p.A1031	0.157	223	0%	148	15.5%	2	0%	-	-	-	HMMPfam_PSI,HMMSmart_SM00423
SLC23A2	9962	genome.wustl.edu	37	20	4843493	4843493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005116.5	-1	reviewed	p.G473W	1.000	81	0%	81	46.9%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Xan_ur_permease
JAG1	182	genome.wustl.edu	37	20	10628641	10628641	+	Missense_Mutation	SNP	G	G	T	rs6040052		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000214.2	-1	reviewed	p.L563M	1.000	429	0%	382	40.1%	6	50%	probably_damaging(0.999)	tolerated(0.23)	deleterious(0.532)	superfamily_SSF57196
SEL1L2	80343	genome.wustl.edu	37	20	13912311	13912311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025229.1	-1	validated	p.Q74R	0.001	448	0%	234	13.2%	0	-	benign(0.071)	tolerated(0.16)	neutral(0.065)	NULL
DZANK1	55184	genome.wustl.edu	37	20	18424086	18424086	+	Missense_Mutation	SNP	G	G	C	rs190534960	by1000genomes	TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099407.1	-1	validated	p.R218G	0.926	92	0%	71	33.8%	2	100%	possibly_damaging(0.928)	tolerated(0.05)	deleterious(0.721)	NULL
RALGAPA2	57186	genome.wustl.edu	37	20	20553672	20553672	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430436	-1	known	p.P733L	0.994	143	0%	152	47.4%	1	100%	-	-	-	NULL
CD93	22918	genome.wustl.edu	37	20	23065242	23065242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012072.3	-1	reviewed	p.A530S	0.000	66	0%	37	43.2%	0	-	benign(0)	tolerated(0.83)	neutral(0.001)	NULL
NINL	22981	genome.wustl.edu	37	20	25456834	25456834	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025176.4	-1	validated	p.P1031	0.000	83	0%	87	48.3%	11	36.3%	-	-	-	NULL
TPX2	22974	genome.wustl.edu	37	20	30386283	30386283	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012112.4	+1	validated	p.Q687	0.116	125	0%	107	44.9%	27	48.1%	-	-	-	HMMPfam_TPX2
SRC	6714	genome.wustl.edu	37	20	36022308	36022308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005417.3	+1	reviewed	p.W121R	1.000	61	0%	60	35%	10	30%	possibly_damaging(0.865)	deleterious(0)	deleterious(0.780)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
CHD6	84181	genome.wustl.edu	37	20	40033870	40033870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032221.3	-1	reviewed	p.T2504M	0.248	94	0%	89	41.6%	9	22.2%	possibly_damaging(0.842)	deleterious(0)	deleterious(0.766)	NULL
TTPAL	79183	genome.wustl.edu	37	20	43117916	43117916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039199.1	+1	validated	p.G255W	1.000	61	0%	41	12.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C
AURKA	6790	genome.wustl.edu	37	20	54961464	54961464	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003600.2	-1	reviewed	p.R56	0.209	296	0%	260	39.6%	4	25%	-	-	-	NULL
TAF4	6874	genome.wustl.edu	37	20	60587964	60587964	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003185.3	-1	reviewed	p.R516	1.000	159	0%	113	12.4%	5	0%	-	-	-	NULL
DOPEY2	9980	genome.wustl.edu	37	21	37618895	37618895	+	Silent	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005128.2	+1	validated	p.T1539	0.000	55	0%	55	16.4%	2	0%	-	-	-	NULL
SLC37A1	54020	genome.wustl.edu	37	21	43979171	43979171	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018964.3	+1	reviewed	p.I318N	1.000	123	0%	128	18%	4	25%	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SUMO3	6612	genome.wustl.edu	37	21	46228918	46228918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397898	-1	known	p.C89Y	0.000	196	0.5%	184	36.4%	0	-	benign(0.014)	deleterious(0.01)	neutral(0.406)	NULL
CDC45	8318	genome.wustl.edu	37	22	19504136	19504136	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003504.3	+1	reviewed	p.I509	0.998	82	0%	91	41.8%	49	40.8%	-	-	-	HMMPfam_CDC45
LZTR1	8216	genome.wustl.edu	37	22	21346005	21346005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006767.3	+1	reviewed	p.R294C	1.000	43	0%	49	51%	15	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
MYO18B	84700	genome.wustl.edu	37	22	26304379	26304379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032608.5	+1	reviewed	p.R1747S	1.000	120	0%	109	24.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CACNA1I	8911	genome.wustl.edu	37	22	40060844	40060844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021096.3	+1	reviewed	p.V1256A	1.000	59	0%	71	12.7%	0	-	benign(0.364)	tolerated(0.12)	neutral(0.377)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NAGA	4668	genome.wustl.edu	37	22	42462770	42462770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000262.2	-1	reviewed	p.R181C	1.000	36	0%	32	25%	10	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Glyco_hydro_cat
PACSIN2	11252	genome.wustl.edu	37	22	43289487	43289487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007229.3	-1	reviewed	p.R65C	1.000	21	0%	37	29.7%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FCH,HMMSmart_SM00055
MPPED1	758	genome.wustl.edu	37	22	43821058	43821058	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044370.1	+1	validated	p.L23	1.000	61	0%	67	14.9%	0	-	-	-	-	NULL
MPPED1	758	genome.wustl.edu	37	22	43870647	43870647	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044370.1	+1	validated	p.I146	1.000	126	0.8%	129	35.7%	0	-	-	-	-	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
PHF21B	112885	genome.wustl.edu	37	22	45283873	45283873	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138415.3	-1	validated	p.G389	0.011	16	0%	11	72.7%	2	50%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD
FAM47C	442444	genome.wustl.edu	37	X	37028088	37028088	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013736.2	+1	validated	p.H535	0.029	206	0%	243	21.8%	0	-	-	-	-	NULL
PRRG1	5638	genome.wustl.edu	37	X	37312841	37312841	+	Silent	SNP	T	T	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000950.2	+1	reviewed	p.I208	0.998	204	0%	170	22.4%	2	0%	-	-	-	NULL
USP9X	8239	genome.wustl.edu	37	X	41029342	41029342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039590.2	+1	reviewed	p.T911A	1.000	476	0%	398	19.1%	1	0%	benign(0.135)	deleterious(0.01)	neutral(0.417)	NULL
KDM6A	7403	genome.wustl.edu	37	X	44894187	44894187	+	Silent	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021140.2	+1	reviewed	p.L192	1.000	907	0%	618	36.4%	0	-	-	-	-	superfamily_SSF48452
ZNF182	7569	genome.wustl.edu	37	X	47835701	47835701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006962.1	-1	reviewed	p.E595D	1.000	352	0%	287	18.1%	4	0%	benign(0.363)	deleterious(0)	deleterious(0.560)	superfamily_SSF57667
PHF8	23133	genome.wustl.edu	37	X	54037560	54037560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015107.2	-1	reviewed	p.P314H	1.000	252	0.4%	175	39.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like
MED12	9968	genome.wustl.edu	37	X	70361121	70361121	+	Silent	SNP	A	A	G	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005120.2	+1	reviewed	p.Q2103	0.916	70	0%	100	35%	48	75%	-	-	-	NULL
MED12	9968	genome.wustl.edu	37	X	70361205	70361205	+	Silent	SNP	C	C	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005120.2	+1	reviewed	p.P2131	1.000	165	0.6%	145	42.1%	114	0%	-	-	-	NULL
LOC727838	727838	genome.wustl.edu	37	X	118207204	118207204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343842.1	+1	model	p.D6N	0.000	8	0.000	11	0.455	0	-	-	-	-	NULL
GRIA3	2892	genome.wustl.edu	37	X	122613916	122613916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371256	+1	known	p.T776M	1.000	358	0%	276	36.6%	0	-	possibly_damaging(0.95)	deleterious(0.01)	deleterious(0.799)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
SMARCA1	6594	genome.wustl.edu	37	X	128599660	128599660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003069.3	-1	reviewed	p.T956N	1.000	417	0%	314	40.1%	38	0%	benign(0.089)	tolerated(0.17)	neutral(0.066)	superfamily_Homeodomain-like,HMMPfam_SLIDE,superfamily_P-loop containing nucleoside triphosphate hydrolases
FRMD7	90167	genome.wustl.edu	37	X	131234652	131234652	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194277.2	-1	reviewed	p.H50Q	0.998	324	0%	221	17.2%	0	-	benign(0.008)	tolerated(0.41)	neutral(0.015)	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
HS6ST2	90161	genome.wustl.edu	37	X	132091135	132091135	+	Silent	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077188.1	-1	reviewed	p.L216	0.997	40	0%	61	44.3%	3	0%	-	-	-	HMMPfam_HS6ST
TFDP3	51270	genome.wustl.edu	37	X	132352203	132352203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016521.2	-1	reviewed	p.V29I	0.398	212	0%	237	40.9%	0	-	possibly_damaging(0.76)	tolerated(0.13)	deleterious(0.534)	NULL
MTMR1	8776	genome.wustl.edu	37	X	149905204	149905204	+	Silent	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003828.2	+1	reviewed	p.A398	0.000	316	0%	263	35%	1	100%	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
ATP2B3	492	genome.wustl.edu	37	X	152821594	152821594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A0WH-01	TCGA-DI-A0WH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001344.2	+1	reviewed	p.A716T	1.000	83	0%	74	37.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
