Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AAK1	22848	genome.wustl.edu	37	2	69870164	69870166	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	69870164	69870166	CTT	-	DEL	AAK1	NM_014911	human	genbank	57_37b	-1	reviewed	in_frame_del	c.9_7	p.K3in_frame_del	1.000:1.000:1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[69870010,69870172])	no_errors	
ADAM2	2515	genome.wustl.edu	37	8	39695672	39695672	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	39695672	39695672	G	A	SNP	ADAM2	NM_001464	human	genbank	57_37b	-1	reviewed	silent	c.33	p.L11	0.073	HMMPfam_Pep_M12B_propep	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2"	-	no_errors	
AGAP2	116986	genome.wustl.edu	37	12	58125611	58125611	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	58125611	58125611	C	A	SNP	AGAP2	NM_001122772	human	genbank	57_37b	-1	validated	missense	c.1934	p.R645L	0.999	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Miro,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Ankyrin repeat,HMMPfam_Ank	-	no_errors	
AMAC1L1	646000	genome.wustl.edu	37	18	11644698	11644698	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	11644698	11644698	C	T	SNP	AMAC1L1	ENST00000424015	human	ensembl	57_37b	+1	known	nonsense	c.889	p.Q297*	0.206	superfamily_Multidrug resistance efflux transporter EmrE	HMMPfam_DUF6,superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors	
ARHGAP31	0	genome.wustl.edu	37	3	119099788	119099788	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	119099788	119099788	C	A	SNP	ARHGAP31	NM_020754	human	genbank	57_37b	+1	reviewed	missense	c.386	p.A129D	0.999	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
ASZ1	136991	genome.wustl.edu	37	7	117021097	117021097	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	117021097	117021097	G	C	SNP	ASZ1	NM_130768	human	genbank	57_37b	-1	validated	missense	c.913	p.L305V	0.998	HMMPfam_SAM_2,superfamily_SAM_homology	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_SAM_2,superfamily_SAM_homology	-	no_errors	
ATAD3B	83858	genome.wustl.edu	37	1	1425849	1425849	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1425849	1425849	G	C	SNP	ATAD3B	ENST00000378737	human	ensembl	57_37b	+1	known	splice_site	c.915-1	e9-1	0.088	-	-	-	no_errors	
BIRC8	112401	genome.wustl.edu	37	19	53793014	53793014	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53793014	53793014	C	T	SNP	BIRC8	NM_033341	human	genbank	57_37b	-1	validated	missense	c.614	p.G205E	1.000	superfamily_Inhibitor of apoptosis (IAP) repeat,HMMSmart_SM00184	superfamily_Inhibitor of apoptosis (IAP) repeat,HMMSmart_SM00238,PatternScan_BIR_REPEAT_1,HMMPfam_BIR,HMMSmart_SM00184	-	no_errors	
C10orf96	374355	genome.wustl.edu	37	10	118117417	118117417	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	118117417	118117417	G	T	SNP	C10orf96	NM_198515	human	genbank	57_37b	+1	validated	missense	c.620	p.S207I	0.004	NULL	NULL	-	no_errors	
C1orf94	84970	genome.wustl.edu	37	1	34663261	34663261	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	34663261	34663261	G	T	SNP	C1orf94	NM_001134734	human	genbank	57_37b	+1	validated	missense	c.756	p.K252N	0.997	NULL	NULL	-	no_errors	
C6orf108	10591	genome.wustl.edu	37	6	43193877	43193877	+	Silent	SNP	G	G	A	rs7832	byCluster;byFrequency;by1000genomes	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43193877	43193877	G	A	SNP	C6orf108	NM_006443	human	genbank	57_37b	-1	reviewed	silent	c.270	p.V90	0.001	superfamily_SSF52309,HMMPfam_Nuc_deoxyrib_tr	superfamily_SSF52309,HMMPfam_Nuc_deoxyrib_tr	-		
C9orf79	286234	genome.wustl.edu	37	9	90501430	90501430	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	90501430	90501430	G	C	SNP	C9orf79	NM_178828	human	genbank	57_37b	+1	validated	missense	c.2028	p.L676F	0.000	NULL	NULL	-	no_errors	
CACNA1E	777	genome.wustl.edu	37	1	181684488	181684488	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	181684488	181684488	G	T	SNP	CACNA1E	NM_000721	human	genbank	57_37b	+1	reviewed	missense	c.1186	p.A396S	1.000	superfamily_Voltage-gated potassium channels	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors	
CACNG7	59284	genome.wustl.edu	37	19	54416214	54416214	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54416214	54416214	G	A	SNP	CACNG7	NM_031896	human	genbank	57_37b	+1	reviewed	silent	c.129	p.P43	0.955	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin	-	no_errors	
CCDC62	84660	genome.wustl.edu	37	12	123265847	123265847	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	123265847	123265847	G	A	SNP	CCDC62	NM_201435	human	genbank	57_37b	+1	validated	silent	c.366	p.T122	0.010	NULL	NULL	-	no_errors	
CDC20B	166979	genome.wustl.edu	37	5	54436202	54436202	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	54436202	54436202	C	T	SNP	CDC20B	NM_152623	human	genbank	57_37b	-1	validated	missense	c.520	p.V174M	0.001	superfamily_WD40_like	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
CDCA7L	55536	genome.wustl.edu	37	7	21946010	21946010	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	21946010	21946010	C	T	SNP	CDCA7L	NM_018719	human	genbank	57_37b	-1	validated	missense	c.818	p.R273Q	1.000	NULL	HMMPfam_zf-4CXXC_R1	-	no_errors	
CDH9	1007	genome.wustl.edu	37	5	26885845	26885845	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	26885845	26885845	C	T	SNP	CDH9	NM_016279	human	genbank	57_37b	-1	reviewed	missense	c.1760	p.R587H	0.993	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
CFH	3075	genome.wustl.edu	37	1	196694377	196694377	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	196694377	196694377	C	A	SNP	CFH	NM_000186	human	genbank	57_37b	+1	reviewed	missense	c.1823	p.S608Y	0.020	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors	
CHGB	1114	genome.wustl.edu	37	20	5903673	5903673	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	5903673	5903673	C	G	SNP	CHGB	NM_001819	human	genbank	57_37b	+1	reviewed	missense	c.883	p.Q295E	0.997	HMMPfam_Granin	HMMPfam_Granin,PatternScan_GRANINS_2,PatternScan_GRANINS_1	-	no_errors	
COL5A1	1289	genome.wustl.edu	37	9	137620530	137620530	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	137620530	137620530	C	T	SNP	COL5A1	NM_000093	human	genbank	57_37b	+1	reviewed	silent	c.801	p.D267	0.038	NULL	HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI	-	no_errors	
CYB5R2	51700	genome.wustl.edu	37	11	7689777	7689777	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	7689777	7689777	C	G	SNP	CYB5R2	NM_016229	human	genbank	57_37b	-1	validated	missense	c.404	p.R135T	0.890	superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1	-	no_errors	
DCDC2B	149069	genome.wustl.edu	37	1	32681437	32681437	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32681437	32681437	T	G	SNP	DCDC2B	NM_001099434	human	genbank	57_37b	+1	validated	missense	c.989	p.L330R	0.058	NULL	HMMSmart_SM00537,superfamily_Doublecortin (DC),HMMPfam_DCX	-	no_errors	
DGKQ	1609	genome.wustl.edu	37	4	955823	955823	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	955823	955823	C	G	SNP	DGKQ	NM_001347	human	genbank	57_37b	-1	reviewed	silent	c.2262	p.L754	0.989	HMMPfam_DAGK_acc,HMMSmart_SM00045	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_C1_3,HMMPfam_RA,HMMSmart_SM00314,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045	-	no_errors	
DIRC1	116093	genome.wustl.edu	37	2	189599494	189599494	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	189599494	189599494	C	A	SNP	DIRC1	NM_052952	human	genbank	57_37b	-1	validated	missense	c.154	p.A52S	0.000	NULL	NULL	-	no_errors	
DISP1	84976	genome.wustl.edu	37	1	223176630	223176630	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	223176630	223176630	C	T	SNP	DISP1	NM_032890	human	genbank	57_37b	+1	reviewed	nonsense	c.1891	p.R631*	0.935	HMMPfam_Patched,superfamily_SSF82866	HMMPfam_Patched,superfamily_SSF82866	-	no_errors	
DNAH3	55567	genome.wustl.edu	37	16	20976354	20976354	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	20976354	20976354	T	G	SNP	DNAH3	NM_017539	human	genbank	57_37b	-1	provisional	missense	c.8852	p.K2951T	0.004	superfamily_Prefoldin	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_Prefoldin,HMMPfam_Dynein_heavy	-	no_errors	
EARS2	124454	genome.wustl.edu	37	16	23563498	23563498	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	23563498	23563498	C	G	SNP	EARS2	NM_001083614	human	genbank	57_37b	-1	provisional	missense	c.267	p.E89D	0.990	superfamily_SSF52374,HMMPfam_tRNA-synt_1c	superfamily_SSF52374,HMMPfam_tRNA-synt_1c,PatternScan_AA_TRNA_LIGASE_I,superfamily_tRNA-synt_bind	-	no_errors	
EFTUD1	79631	genome.wustl.edu	37	15	82450123	82450123	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	82450123	82450123	G	A	SNP	EFTUD1	NM_024580	human	genbank	57_37b	-1	validated	missense	c.1961	p.T654M	1.000	superfamily_EF-G C-terminal domain-like	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,superfamily_Translation proteins,superfamily_EF-G C-terminal domain-like,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_EFG_IV,HMMPfam_EFG_C	-	no_errors	
EHBP1	23301	genome.wustl.edu	37	2	63169992	63169992	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	63169992	63169992	C	G	SNP	EHBP1	NM_015252	human	genbank	57_37b	+1	reviewed	missense	c.1430	p.S477C	1.000	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	-	no_errors	
EIF2S1	1965	genome.wustl.edu	37	14	67847477	67847477	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	67847477	67847477	G	A	SNP	EIF2S1	NM_004094	human	genbank	57_37b	+1	validated	missense	c.575	p.R192Q	1.000	HMMPfam_EIF_2_alpha,superfamily_eIF-2-alpha C-terminal domain	superfamily_Nucleic acid-binding proteins,HMMPfam_S1,HMMSmart_SM00316,HMMPfam_EIF_2_alpha,superfamily_eIF-2-alpha C-terminal domain	-	no_errors	
ENSG00000215512	0	genome.wustl.edu	37	18	15325695	15325695	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	15325695	15325695	A	G	SNP	ENSG00000215512	ENST00000333851	human	ensembl	57_37b	-1	known	missense	c.200	p.I67T	1.000	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,PatternScan_ASP_PROTEASE	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,PatternScan_ASP_PROTEASE	-	no_errors	
ENTPD4	9583	genome.wustl.edu	37	8	23302096	23302096	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	23302096	23302096	G	C	SNP	ENTPD4	NM_004901	human	genbank	57_37b	-1	validated	missense	c.436	p.P146A	1.000	HMMPfam_GDA1_CD39	HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE	-	no_errors	
EVPL	2125	genome.wustl.edu	37	17	74006302	74006302	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	74006302	74006302	A	C	SNP	EVPL	NM_001988	human	genbank	57_37b	-1	validated	missense	c.2984	p.V995G	0.108	NULL	superfamily_Spectrin repeat,HMMSmart_SM00150,HMMSmart_SM00250,superfamily_Prefoldin,superfamily_Plakin repeat,HMMPfam_Plectin	-	no_errors	
EXOC2	55770	genome.wustl.edu	37	6	497377	497377	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	497377	497377	C	G	SNP	EXOC2	NM_018303	human	genbank	57_37b	-1	reviewed	missense	c.2549	p.G850A	1.000	NULL	superfamily_Ig_E-set,HMMPfam_TIG	-	no_errors	
FAM55B	120406	genome.wustl.edu	37	11	114569175	114569175	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	114569175	114569175	C	G	SNP	FAM55B	NM_182495	human	genbank	57_37b	+1	validated	missense	c.541	p.L181V	0.962	superfamily_E set domains	superfamily_E set domains	-	no_errors	
FAM58A	92002	genome.wustl.edu	37	X	152853866	152853866	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	152853866	152853866	G	A	SNP	FAM58A	ENST00000276345	human	ensembl	57_37b	-1	known	missense	c.698	p.S233F	1.000	superfamily_Cyclin_like,HMMSmart_CYCLIN	HMMSmart_CYCLIN,superfamily_Cyclin_like	-	no_errors	
GCN1L1	10985	genome.wustl.edu	37	12	120613011	120613011	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	120613011	120613011	C	T	SNP	GCN1L1	NM_006836	human	genbank	57_37b	-1	validated	silent	c.1047	p.S349	0.051	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
GEFT	115557	genome.wustl.edu	37	12	58010663	58010663	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	58010663	58010663	G	A	SNP	GEFT	NM_001111270	human	genbank	57_37b	+1	validated	missense	c.1846	p.E616K	1.000	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like	-	no_errors	
IGSF9	57549	genome.wustl.edu	37	1	159900122	159900122	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	159900122	159900122	G	A	SNP	IGSF9	NM_001135050	human	genbank	57_37b	-1	validated	silent	c.1921	p.L641	0.770	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	HMMPfam_V-set,HMMSmart_IG,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like	-	no_errors	
ITLN2	142683	genome.wustl.edu	37	1	160920836	160920836	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160920836	160920836	G	C	SNP	ITLN2	NM_080878	human	genbank	57_37b	-1	validated	nonsense	c.438	p.Y146*	1.000	superfamily_Fibrinogen C-terminal domain-like	superfamily_Fibrinogen C-terminal domain-like	-	no_errors	
ITPRIP	85450	genome.wustl.edu	37	10	106075563	106075563	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	106075563	106075563	G	A	SNP	ITPRIP	NM_033397	human	genbank	57_37b	-1	provisional	missense	c.247	p.R83C	0.001	NULL	NULL	-	no_errors	
KCNH1	3756	genome.wustl.edu	37	1	210856855	210856855	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	210856855	210856855	G	A	SNP	KCNH1	NM_172362	human	genbank	57_37b	-1	reviewed	missense	c.2738	p.S913L	0.168	NULL	superfamily_PYP-like sensor domain (PAS domain),HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors	
KCNJ16	3773	genome.wustl.edu	37	17	68128510	68128510	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	68128510	68128510	C	T	SNP	KCNJ16	NM_018658	human	genbank	57_37b	+1	reviewed	silent	c.282	p.L94	1.000	superfamily_SSF81324,HMMPfam_IRK	superfamily_SSF81324,HMMPfam_IRK,superfamily_Ig_E-set	-	no_errors	
KIAA0319	9856	genome.wustl.edu	37	6	24566862	24566862	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	24566862	24566862	T	C	SNP	KIAA0319	NM_014809	human	genbank	57_37b	-1	reviewed	missense	c.2255	p.Y752C	1.000	superfamily_PKD domain,HMMSmart_SM00060,HMMSmart_SM00089	HMMSmart_SM00765,HMMSmart_SM00060,HMMSmart_SM00089,superfamily_PKD domain	-	no_errors	
LAMA1	284217	genome.wustl.edu	37	18	6942104	6942104	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	6942104	6942104	G	A	SNP	LAMA1	NM_005559	human	genbank	57_37b	-1	validated	missense	c.9202	p.H3068Y	1.000	superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMSmart_SM00282,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	-	no_errors	
LOC100289151	0	genome.wustl.edu	37	10	15057441	15057441	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	15057441	15057441	C	G	SNP	LOC100289151	XM_002342972	human	genbank	57_37b	-1	model	missense	c.318	p.R106S	1.000	NULL	NULL	-	no_errors	
LPAR2	9170	genome.wustl.edu	37	19	19737686	19737686	+	Silent	SNP	C	C	T	rs33982830	byCluster;byFrequency;by1000genomes	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19737686	19737686	C	T	SNP	LPAR2	NM_004720	human	genbank	57_37b	-1	reviewed	silent	c.408	p.V136	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
LPL	4023	genome.wustl.edu	37	8	19805748	19805748	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	19805748	19805748	C	T	SNP	LPL	ENST00000311322	human	ensembl	57_37b	+1	known	missense	c.146	p.T49I	1.000	superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase	superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308	-	no_errors	
MBTD1	54799	genome.wustl.edu	37	17	49270286	49270286	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	49270286	49270286	C	T	SNP	MBTD1	NM_017643	human	genbank	57_37b	-1	validated	missense	c.1547	p.R516Q	1.000	HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT,HMMPfam_MBT	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT	-	no_errors	
MED12L	116931	genome.wustl.edu	37	3	151085954	151085954	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	151085954	151085954	C	T	SNP	MED12L	NM_053002	human	genbank	57_37b	+1	validated	silent	c.3360	p.D1120	0.315	NULL	HMMPfam_Med12	-	no_errors	
MTBP	27085	genome.wustl.edu	37	8	121468800	121468800	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	121468800	121468800	C	G	SNP	MTBP	NM_022045	human	genbank	57_37b	+1	provisional	missense	c.637	p.Q213E	1.000	NULL	NULL	-	no_errors	
NID1	4811	genome.wustl.edu	37	1	236208972	236208987	+	In_Frame_Del	DEL	GAACGTGTTTCTCTGT	GAACGTGTTTCTCTGT	-	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	GAACGTGTTTCTCTGT	GAACGTGTTTCTCTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	236208972	236208987	GAACGTGTTTCTCTGT	-	DEL	NID1	NM_002508	human	genbank	57_37b	-1	reviewed	in_frame_del	c.537_526	p.RNTF176in_frame_del	1.000:1.000:0.999:0.360:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMSmart_SM00539,HMMPfam_NIDO	HMMSmart_SM00539,HMMPfam_NIDO,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,PatternScan_EGF_CA,HMMPfam_EGF_CA,superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,PatternScan_EGF_1	(deletion:cds_exon[236208757,236208983], intron[236208984,236211989])	no_errors	
NLRC3	197358	genome.wustl.edu	37	16	3611719	3611719	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3611719	3611719	G	A	SNP	NLRC3	NM_178844	human	genbank	57_37b	-1	validated	missense	c.1999	p.R667C	1.000	superfamily_RNI-like,HMMSmart_SM00368	PatternScan_LIPOCALIN,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors	
OMD	4958	genome.wustl.edu	37	9	95178955	95178956	+	Frame_Shift_Ins	INS	-	-	TGCT	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	95178955	95178956	-	TGCT	INS	OMD	NM_005014	human	genbank	57_37b	-1	validated	frame_shift_ins	c.886_885	p.F295fs	1.000:0.998	superfamily_L domain-like	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors	
OR11H6	122748	genome.wustl.edu	37	14	20691885	20691885	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	20691885	20691885	A	T	SNP	OR11H6	NM_001004480	human	genbank	57_37b	+1	provisional	missense	c.17	p.H6L	0.728	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR7G1	125962	genome.wustl.edu	37	19	9226091	9226091	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9226091	9226091	C	A	SNP	OR7G1	NM_001005192	human	genbank	57_37b	-1	provisional	missense	c.349	p.V117F	0.011	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PAQR9	344838	genome.wustl.edu	37	3	142681942	142681942	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	142681942	142681942	C	G	SNP	PAQR9	NM_198504	human	genbank	57_37b	-1	validated	missense	c.237	p.K79N	1.000	HMMPfam_HlyIII	HMMPfam_HlyIII	-	no_errors	
PCDHB6	56130	genome.wustl.edu	37	5	140531491	140531491	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140531491	140531491	C	T	SNP	PCDHB6	NM_018939	human	genbank	57_37b	+1	reviewed	silent	c.1653	p.D551	0.997	superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PDILT	204474	genome.wustl.edu	37	16	20387489	20387489	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	20387489	20387489	C	G	SNP	PDILT	NM_174924	human	genbank	57_37b	-1	provisional	missense	c.444	p.L148F	1.000	superfamily_Thiordxn-like_fd	PatternScan_THIOREDOXIN_1,superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_ER_TARGET	-	no_errors	
PHLPP2	23035	genome.wustl.edu	37	16	71682825	71682825	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	71682825	71682825	C	T	SNP	PHLPP2	NM_015020	human	genbank	57_37b	-1	validated	missense	c.3940	p.E1314K	0.994	NULL	superfamily_PH domain-like,superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C	-	no_errors	
PHYH	5264	genome.wustl.edu	37	10	13320306	13320306	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	13320306	13320306	G	C	SNP	PHYH	NM_006214	human	genbank	57_37b	-1	reviewed	missense	c.1012	p.L338V	1.000	NULL	HMMPfam_PhyH	-	no_errors	
PIGB	9488	genome.wustl.edu	37	15	55647072	55647072	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	55647072	55647072	G	A	SNP	PIGB	NM_004855	human	genbank	57_37b	+1	reviewed	missense	c.1414	p.E472K	1.000	NULL	HMMPfam_Glyco_transf_22	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178952075	178952075	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952075	178952075	A	T	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.3130	p.N1044Y	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PPIP5K2	0	genome.wustl.edu	37	5	102482291	102482291	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	102482291	102482291	C	T	SNP	PPIP5K2	NM_015216	human	genbank	57_37b	+1	provisional	missense	c.548	p.P183L	1.000	superfamily_SSF56059	superfamily_SSF56059,superfamily_SSF53254,HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1	-	no_errors	
RAB21	23011	genome.wustl.edu	37	12	72176409	72176409	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	72176409	72176409	T	C	SNP	RAB21	NM_014999	human	genbank	57_37b	+1	provisional	missense	c.506	p.I169T	1.000	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	-	no_errors	
RNF139	11236	genome.wustl.edu	37	8	125498596	125498596	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	125498596	125498596	G	A	SNP	RNF139	NM_007218	human	genbank	57_37b	+1	reviewed	missense	c.706	p.D236N	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00744,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors	
RPL17	6139	genome.wustl.edu	37	18	47015767	47015767	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	47015767	47015767	C	T	SNP	RPL17	NM_000985	human	genbank	57_37b	-1	reviewed	missense	c.469	p.V157I	1.000	NULL	superfamily_Ribosomal protein L22,HMMPfam_Ribosomal_L22,PatternScan_RIBOSOMAL_L22	-	no_errors	
RSAD1	55316	genome.wustl.edu	37	17	48560768	48560768	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48560768	48560768	G	T	SNP	RSAD1	ENST00000451010	human	ensembl	57_37b	+1	known	missense	c.569	p.W190L	1.000	NULL	superfamily_SSF102114	-	no_errors	
RYR2	6262	genome.wustl.edu	37	1	237777585	237777585	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237777585	237777585	C	T	SNP	RYR2	NM_001035	human	genbank	57_37b	+1	reviewed	silent	c.5157	p.L1719	0.901	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SCN5A	6331	genome.wustl.edu	37	3	38592777	38592777	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	38592777	38592777	T	C	SNP	SCN5A	NM_001099404	human	genbank	57_37b	-1	reviewed	missense	c.5086	p.T1696A	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMPfam_IQ	-	no_errors	
SETD2	29072	genome.wustl.edu	37	3	47158198	47158198	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	47158198	47158198	A	G	SNP	SETD2	NM_014159	human	genbank	57_37b	-1	reviewed	missense	c.4501	p.C1501R	1.000	superfamily_SET domain,HMMSmart_SM00570	PatternScan_ADH_IRON_1,superfamily_Ferritin-like,superfamily_SET domain,HMMSmart_SM00570,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,HMMPfam_SRI_2	-	no_errors	
SHISA2	387914	genome.wustl.edu	37	13	26620777	26620777	+	Silent	SNP	G	G	A	rs77556088	byCluster;by1000genomes	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	26620777	26620777	G	A	SNP	SHISA2	NM_001007538	human	genbank	57_37b	-1	provisional	silent	c.762	p.H254	0.108	NULL	NULL	-		
SLC7A7	9056	genome.wustl.edu	37	14	23248035	23248035	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23248035	23248035	T	G	SNP	SLC7A7	NM_001126105	human	genbank	57_37b	-1	reviewed	missense	c.737	p.N246T	1.000	HMMPfam_AA_permease	PatternScan_AMINO_ACID_PERMEASE_1,HMMPfam_AA_permease	-	no_errors	
SLCO6A1	133482	genome.wustl.edu	37	5	101813402	101813402	+	Silent	SNP	T	T	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	101813402	101813402	T	A	SNP	SLCO6A1	NM_173488	human	genbank	57_37b	-1	validated	silent	c.780	p.T260	0.001	HMMPfam_OATP,superfamily_MFS general substrate transporter	HMMPfam_OATP,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2	-	no_errors	
SMG1	23049	genome.wustl.edu	37	16	18903661	18903662	+	Frame_Shift_Ins	INS	-	-	AA	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	18903661	18903662	-	AA	INS	SMG1	NM_015092	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.428_427	p.Y143fs	1.000:1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors	
SORCS3	22986	genome.wustl.edu	37	10	106737218	106737218	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	106737218	106737218	G	A	SNP	SORCS3	NM_014978	human	genbank	57_37b	+1	reviewed	silent	c.921	p.E307	0.998	superfamily_SSF110296,HMMSmart_VPS10	superfamily_SSF110296,HMMSmart_VPS10,HMMPfam_PKD,superfamily_PKD	-	no_errors	
SPEF2	79925	genome.wustl.edu	37	5	35800068	35800068	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	35800068	35800068	A	T	SNP	SPEF2	NM_024867	human	genbank	57_37b	+1	validated	splice_site	c.4831-2	e34-2	0.996	-	-	-	no_errors	
SRCAP	10847	genome.wustl.edu	37	16	30724033	30724033	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30724033	30724033	C	G	SNP	SRCAP	NM_006662	human	genbank	57_37b	+1	validated	missense	c.2027	p.T676S	1.000	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N	HMMPfam_HSA,HMMSmart_SM00573,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_AT_hook,HMMSmart_SM00384	-	no_errors	
SYCP2	10388	genome.wustl.edu	37	20	58444998	58444998	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	58444998	58444998	C	G	SNP	SYCP2	NM_014258	human	genbank	57_37b	-1	reviewed	missense	c.3596	p.R1199T	0.000	NULL	NULL	-	no_errors	
SYNPO	11346	genome.wustl.edu	37	5	150028362	150028362	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	150028362	150028362	G	A	SNP	SYNPO	NM_007286	human	genbank	57_37b	+1	validated	silent	c.525	p.T175	0.000	NULL	NULL	-	no_errors	
THRA	7067	genome.wustl.edu	37	17	38230773	38230773	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38230773	38230773	G	T	SNP	THRA	NM_003250	human	genbank	57_37b	+1	reviewed	missense	c.32	p.G11V	1.000	NULL	HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors	
TMEM146	257062	genome.wustl.edu	37	19	5776305	5776305	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	5776305	5776305	C	T	SNP	TMEM146	NM_152784	human	genbank	57_37b	+1	validated	missense	c.2075	p.S692L	0.002	NULL	NULL	-	no_errors	
UBR4	23352	genome.wustl.edu	37	1	19528276	19528276	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19528276	19528276	G	A	SNP	UBR4	NM_020765	human	genbank	57_37b	-1	validated	silent	c.210	p.Y70	0.091	NULL	superfamily_ARM repeat,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-UBR,HMMSmart_SM00396,PatternScan_ASP_GLU_RACEMASE_1	-	no_errors	
UTP14A	10813	genome.wustl.edu	37	X	129063526	129063526	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	129063526	129063526	A	T	SNP	UTP14A	NM_006649	human	genbank	57_37b	+1	reviewed	missense	c.2258	p.N753I	0.132	NULL	HMMPfam_Utp14	-	no_errors	
WDFY3	23001	genome.wustl.edu	37	4	85642669	85642669	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	85642669	85642669	C	T	SNP	WDFY3	NM_014991	human	genbank	57_37b	-1	reviewed	missense	c.7498	p.E2500K	1.000	NULL	superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cyclin-like,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	-	no_errors	
XKR3	150165	genome.wustl.edu	37	22	17288863	17288863	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	17288863	17288863	G	T	SNP	XKR3	NM_175878	human	genbank	57_37b	-1	validated	missense	c.101	p.P34H	0.709	NULL	HMMPfam_XK-related	-	no_errors	
ZNF483	158399	genome.wustl.edu	37	9	114305318	114305318	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	114305318	114305318	T	C	SNP	ZNF483	NM_133464	human	genbank	57_37b	+1	validated	silent	c.2103	p.S701	0.201	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF530	348327	genome.wustl.edu	37	19	58117885	58117885	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58117885	58117885	C	A	SNP	ZNF530	NM_020880	human	genbank	57_37b	+1	validated	missense	c.992	p.S331Y	0.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZSWIM4	65249	genome.wustl.edu	37	19	13941680	13941680	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14V-01	TCGA-E2-A14V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	13941680	13941680	C	T	SNP	ZSWIM4	NM_023072	human	genbank	57_37b	+1	validated	missense	c.2786	p.S929L	0.997	NULL	HMMPfam_SWIM	-	no_errors	
