Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ALS2CR11	151254	genome.wustl.edu	37	2	202358909	202358909	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	202358909	202358909	T	-	DEL	ALS2CR11	ENST00000439140	human	ensembl	57_37b	-1	known	frame_shift_del	c.2155	p.S719fs	0.000	NULL	NULL	(deletion:cds_exon[202355892,202359482])	no_errors	
C2	717	genome.wustl.edu	37	6	31896624	31896624	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31896624	31896624	G	A	SNP	C2	NM_000063	human	genbank	57_37b	+1	reviewed	silent	c.372	p.R124	1.000	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Complement control module/SCR domain,HMMSmart_SM00032,HMMPfam_Sushi,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
C9orf9	11092	genome.wustl.edu	37	9	135763881	135763881	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	135763881	135763881	G	A	SNP	C9orf9	ENST00000356311	human	ensembl	57_37b	+1	known	silent	c.552	p.Q184	0.005	NULL	NULL	-	no_errors	
CCNB3	85417	genome.wustl.edu	37	X	50037884	50037884	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	50037884	50037884	C	G	SNP	CCNB3	NM_033031	human	genbank	57_37b	+1	reviewed	missense	c.226	p.Q76E	0.004	NULL	superfamily_Cyclin-like,HMMPfam_Cyclin_N,HMMSmart_SM00385,HMMPfam_Cyclin_C	-	no_errors	
CGA	1081	genome.wustl.edu	37	6	87796031	87796031	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	87796031	87796031	C	T	SNP	CGA	NM_000735	human	genbank	57_37b	-1	reviewed	silent	c.210	p.T70	0.987	HMMPfam_Hormone_6,superfamily_Cystine-knot cytokines,HMMSmart_SM00067	HMMPfam_Hormone_6,superfamily_Cystine-knot cytokines,HMMSmart_SM00067,PatternScan_GLYCO_HORMONE_ALPHA_1,PatternScan_GLYCO_HORMONE_ALPHA_2	-	no_errors	
CHD8	57680	genome.wustl.edu	37	14	21859709	21859709	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	21859709	21859709	C	A	SNP	CHD8	NM_020920	human	genbank	57_37b	-1	validated	silent	c.6141	p.L2047	1.000	HMMPfam_BRK,HMMSmart_SM00592	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592	-	no_errors	
CLYBL	171425	genome.wustl.edu	37	13	100518535	100518535	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	100518535	100518535	C	T	SNP	CLYBL	ENST00000339105	human	ensembl	57_37b	+1	known	missense	c.676	p.R226W	1.000	superfamily_Phosphoenolpyruvate/pyruvate domain,HMMPfam_HpcH_HpaI	superfamily_Phosphoenolpyruvate/pyruvate domain,HMMPfam_HpcH_HpaI	-	no_errors	
CMTM5	116173	genome.wustl.edu	37	14	23848056	23848056	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23848056	23848056	G	T	SNP	CMTM5	ENST00000339180	human	ensembl	57_37b	+1	known	missense	c.458	p.C153F	0.009	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors	
DISP2	85455	genome.wustl.edu	37	15	40660515	40660515	+	Silent	SNP	G	G	A	rs35565646	byCluster;byFrequency;by1000genomes	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	40660515	40660515	G	A	SNP	DISP2	NM_033510	human	genbank	57_37b	+1	reviewed	silent	c.2202	p.P734	0.002	NULL	superfamily_SSF82866	-		
DMD	1756	genome.wustl.edu	37	X	31152232	31152232	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	31152232	31152232	G	T	SNP	DMD	NM_004006	human	genbank	57_37b	-1	reviewed	missense	c.11001	p.F3667L	1.000	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_t-snare proteins,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Prefoldin	-	no_errors	
DUPD1	338599	genome.wustl.edu	37	10	76818229	76818229	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	76818229	76818229	G	T	SNP	DUPD1	NM_001003892	human	genbank	57_37b	-1	provisional	nonsense	c.44	p.S15*	0.000	NULL	superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
E2F1	1869	genome.wustl.edu	37	20	32267640	32267640	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	32267640	32267640	G	A	SNP	E2F1	NM_005225	human	genbank	57_37b	-1	reviewed	missense	c.493	p.R165W	1.000	superfamily_SSF46785,HMMPfam_E2F_TDP	superfamily_SSF46785,HMMPfam_E2F_TDP	-	no_errors	
ENSG00000185864	0	genome.wustl.edu	37	16	21854855	21854855	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	21854855	21854855	G	A	SNP	ENSG00000185864	ENST00000341400	human	ensembl	57_37b	-1	known	nonsense	c.397	p.R133*	0.003	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors	
ERVFRDE1	0	genome.wustl.edu	37	6	11103979	11103979	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	11103979	11103979	G	T	SNP	ERVFRDE1	NM_207582	human	genbank	57_37b	-1	validated	missense	c.1565	p.T522K	0.003	NULL	HMMPfam_TLV_coat	-	no_errors	
FBXL3	26224	genome.wustl.edu	37	13	77595895	77595895	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	77595895	77595895	C	G	SNP	FBXL3	NM_012158	human	genbank	57_37b	-1	reviewed	missense	c.101	p.C34S	0.014	superfamily_SSF81383,HMMPfam_F-box	superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52047	-	no_errors	
GLG1	2734	genome.wustl.edu	37	16	74486107	74486107	+	RNA	SNP	A	A	C	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	74486107	74486107	A	C	SNP	GLG1	NR_027264	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.003	-	-	-	no_errors	
GOLGA3	2802	genome.wustl.edu	37	12	133363006	133363006	+	Silent	SNP	G	A	A	rs12823938	byCluster;by1000genomes	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	133363006	133363006	G	A	SNP	GOLGA3	NM_005895	human	genbank	57_37b	-1	reviewed	silent	c.3042	p.L1014	0.022	NULL	superfamily_Spectrin repeat,superfamily_Prefoldin	-		
IFITM3	10410	genome.wustl.edu	37	11	320790	320790	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	320790	320790	G	T	SNP	IFITM3	NM_021034	human	genbank	57_37b	-1	validated	missense	c.24	p.F8L	0.000	NULL	HMMPfam_CD225	-	no_errors	
IRAK3	11213	genome.wustl.edu	37	12	66641568	66641568	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	66641568	66641568	T	G	SNP	IRAK3	NM_007199	human	genbank	57_37b	+1	validated	missense	c.1408	p.F470V	0.716	superfamily_Protein kinase-like (PK-like)	superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220	-	no_errors	
KLHL38	340359	genome.wustl.edu	37	8	124664638	124664638	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	124664638	124664638	C	T	SNP	KLHL38	NM_001081675	human	genbank	57_37b	-1	validated	missense	c.529	p.A177T	0.311	HMMPfam_BACK	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1	-	no_errors	
LOC100287477	0	genome.wustl.edu	37	19	50563239	50563239	+	Silent	SNP	A	A	G	rs957738	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A154-01	TCGA-E2-A154-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50563239	50563239	A	G	SNP	LOC100287477	XM_002343656	human	genbank	57_37b	-1	model	silent	c.420	p.T140	0.223	superfamily_C2H2 and C2HC zinc fingers	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-		
LOC100288765	0	genome.wustl.edu	37	9	69847032	69847032	+	Missense_Mutation	SNP	C	C	A	rs2491581	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	69847032	69847032	C	A	SNP	LOC100288765	XM_002342925	human	genbank	57_37b	+1	model	missense	c.1126	p.Q376K	0.892	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-		
MEGF8	1954	genome.wustl.edu	37	19	42862378	42862378	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42862378	42862378	G	A	SNP	MEGF8	NM_001410	human	genbank	57_37b	+1	validated	silent	c.4893	p.L1631	0.999	superfamily_Gal_oxid_central	superfamily_CUB,HMMSmart_CUB,HMMPfam_CUB,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_PSI,PatternScan_C_TYPE_LECTIN_1,HMMPfam_PSI,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,superfamily_SSF57196,PatternScan_ASX_HYDROXYL,HMMPfam_Laminin_EGF,PatternScan_EGF_LAM_1,HMMSmart_EGF_Lam	-	no_errors	
NOVA2	4858	genome.wustl.edu	37	19	46457123	46457123	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46457123	46457123	C	T	SNP	NOVA2	NM_002516	human	genbank	57_37b	-1	validated	missense	c.311	p.R104Q	1.000	HMMSmart_KH,superfamily_SSF54791	HMMSmart_KH,superfamily_SSF54791,HMMPfam_KH_1	-	no_errors	
OBSL1	23363	genome.wustl.edu	37	2	220435375	220435375	+	Silent	SNP	G	A	A	rs1061399	byCluster;by1000genomes	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220435375	220435375	G	A	SNP	OBSL1	NM_015311	human	genbank	57_37b	-1	provisional	silent	c.580	p.L194	1.000	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_ig,HMMPfam_fn3,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_V-set	-		
OCRL	4952	genome.wustl.edu	37	X	128692644	128692644	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	128692644	128692644	G	T	SNP	OCRL	NM_000276	human	genbank	57_37b	+1	reviewed	missense	c.474	p.M158I	1.000	NULL	superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
OR2W5	441932	genome.wustl.edu	37	1	247654805	247654805	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247654805	247654805	G	A	SNP	OR2W5	NM_001004698	human	genbank	57_37b	+1	validated	missense	c.376	p.V126I	0.412	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors	
OR5AR1	219493	genome.wustl.edu	37	11	56431680	56431680	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	56431680	56431680	C	T	SNP	OR5AR1	NM_001004730	human	genbank	57_37b	+1	provisional	silent	c.519	p.I173	0.574	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
OR5T2	219464	genome.wustl.edu	37	11	56000198	56000198	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	56000198	56000198	G	A	SNP	OR5T2	NM_001004746	human	genbank	57_37b	-1	provisional	missense	c.464	p.A155V	0.957	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PCDHGA7	56108	genome.wustl.edu	37	5	140764680	140764680	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140764680	140764680	G	A	SNP	PCDHGA7	NM_018920	human	genbank	57_37b	+1	reviewed	silent	c.2214	p.S738	0.173	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PGLYRP3	114771	genome.wustl.edu	37	1	153270481	153270481	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	153270481	153270481	C	A	SNP	PGLYRP3	NM_052891	human	genbank	57_37b	-1	provisional	missense	c.977	p.G326V	0.802	superfamily_Amidase_2,HMMSmart_Ami_2,HMMPfam_Amidase_2	superfamily_Amidase_2,HMMSmart_PGRP,HMMPfam_Amidase_2,HMMSmart_Ami_2	-	no_errors	
PGM5	5239	genome.wustl.edu	37	9	70993224	70993224	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	70993224	70993224	G	T	SNP	PGM5	NM_021965	human	genbank	57_37b	+1	validated	missense	c.371	p.C124F	1.000	superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_I,PatternScan_PGM_PMM,PatternScan_TRYPSIN_HIS	superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_I,PatternScan_PGM_PMM,PatternScan_TRYPSIN_HIS,HMMPfam_PGM_PMM_II,HMMPfam_PGM_PMM_III,superfamily_Phosphoglucomutase C-terminal domain,HMMPfam_PGM_PMM_IV	-	no_errors	
PHYHIPL	84457	genome.wustl.edu	37	10	60994219	60994230	+	In_Frame_Del	DEL	AACAAGAAAGAG	AACAAGAAAGAG	-	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	AACAAGAAAGAG	AACAAGAAAGAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	60994219	60994230	AACAAGAAAGAG	-	DEL	PHYHIPL	NM_032439	human	genbank	57_37b	+1	validated	in_frame_del	c.262_273	p.KENK90in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_Fibronectin type III,HMMPfam_fn3	superfamily_Fibronectin type III,HMMPfam_fn3	(deletion:cds_exon[60994064,60994260])	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A154-01	TCGA-E2-A154-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	T	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047L	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors	
PPID	5481	genome.wustl.edu	37	4	159644428	159644428	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	159644428	159644428	A	C	SNP	PPID	NM_005038	human	genbank	57_37b	-1	reviewed	missense	c.13	p.S5A	0.189	superfamily_Cyclophilin-like	superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1	-	no_errors	
PRRX1	5396	genome.wustl.edu	37	1	170695377	170695377	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	170695377	170695377	G	A	SNP	PRRX1	NM_022716	human	genbank	57_37b	+1	reviewed	missense	c.434	p.R145Q	1.000	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR	-	no_errors	
RNF113A	7737	genome.wustl.edu	37	X	119005097	119005097	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	119005097	119005097	C	A	SNP	RNF113A	NM_006978	human	genbank	57_37b	-1	validated	missense	c.480	p.Q160H	0.998	NULL	superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors	
RP1	6101	genome.wustl.edu	37	8	55533917	55533917	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	55533917	55533917	C	T	SNP	RP1	NM_006269	human	genbank	57_37b	+1	reviewed	missense	c.391	p.R131W	1.000	NULL	superfamily_SSF89837,HMMSmart_DCX,HMMPfam_DCX	-	no_errors	
RUNX1	861	genome.wustl.edu	37	21	36206729	36206736	+	Frame_Shift_Del	DEL	AGGGTTAA	AGGGTTAA	-	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	AGGGTTAA	AGGGTTAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	36206729	36206736	AGGGTTAA	-	DEL	RUNX1	NM_001754	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.783_776	p.F259fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_Runt,superfamily_p53-like transcription factors,HMMPfam_RunxI	(deletion:cds_exon[36206707,36206898])	no_errors	
SLC12A9	56996	genome.wustl.edu	37	7	100456724	100456724	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100456724	100456724	C	T	SNP	SLC12A9	NM_020246	human	genbank	57_37b	+1	validated	silent	c.918	p.V306	0.000	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors	
SLC40A1	30061	genome.wustl.edu	37	2	190428591	190428591	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	190428591	190428591	A	C	SNP	SLC40A1	NM_014585	human	genbank	57_37b	-1	reviewed	missense	c.1121	p.L374R	0.978	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter,HMMPfam_FPN1	-	no_errors	
SLIT1	6585	genome.wustl.edu	37	10	98816176	98816176	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	98816176	98816176	G	T	SNP	SLIT1	NM_003061	human	genbank	57_37b	-1	validated	missense	c.1203	p.F401L	1.000	superfamily_L domain-like,HMMSmart_SM00369	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMSmart_SM00274,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors	
SLMAP	7871	genome.wustl.edu	37	3	57875847	57875847	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	57875847	57875847	A	G	SNP	SLMAP	ENST00000383719	human	ensembl	57_37b	+1	known	missense	c.1261	p.M421V	0.000	NULL	superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA	-	no_errors	
SMC1A	8243	genome.wustl.edu	37	X	53439174	53439174	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	53439174	53439174	C	T	SNP	SMC1A	NM_006306	human	genbank	57_37b	-1	reviewed	missense	c.884	p.R295Q	1.000	HMMPfam_SMC_N,superfamily_SSF52540	HMMPfam_SMC_N,superfamily_SSF52540,superfamily_SMC_hinge,HMMPfam_SMC_hinge	-	no_errors	
TMEM146	257062	genome.wustl.edu	37	19	5744496	5744496	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	5744496	5744496	C	T	SNP	TMEM146	NM_152784	human	genbank	57_37b	+1	validated	missense	c.632	p.A211V	0.012	NULL	NULL	-	no_errors	
UBA1	7317	genome.wustl.edu	37	X	47065655	47065655	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	47065655	47065655	A	T	SNP	UBA1	NM_003334	human	genbank	57_37b	+1	reviewed	missense	c.1750	p.M584L	1.000	superfamily_MoeB,HMMPfam_ThiF	superfamily_MoeB,HMMPfam_ThiF,PatternScan_UBIQUITIN_ACTIVAT_1,HMMPfam_UBA_e1_thiolCys,PatternScan_UBIQUITIN_ACTIVAT_2,HMMPfam_UBACT,HMMPfam_UBA_e1_C	-	no_errors	
VPS13B	157680	genome.wustl.edu	37	8	100883111	100883111	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	100883111	100883111	G	A	SNP	VPS13B	NM_017890	human	genbank	57_37b	+1	reviewed	missense	c.11566	p.V3856I	1.000	NULL	PatternScan_ZINC_PROTEASE	-	no_errors	
VPS28	51160	genome.wustl.edu	37	8	145649475	145649475	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01	TCGA-E2-A154-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145649475	145649475	C	T	SNP	VPS28	NM_183057	human	genbank	57_37b	-1	reviewed	missense	c.497	p.R166H	0.996	HMMPfam_VPS28	HMMPfam_VPS28	-	no_errors	
