GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.PRAD.2012_05_15__00_00_15.samplestamp.txt |
GDAC_CreateMergeDataFilesSDRF1 annotationid | methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data |
GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues1192469122638414332.tsv |
GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues2831346629149120424.tsv |
GDAC_MergeDataFiles2 output filename | PRAD |
GDAC_MergeDataFiles2 row_column | column |
GDAC_MergeDataFiles2 num_headers | 1 |
GDAC_MergeDataFiles2 filetype | methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data |
Execution Times: | |
Submitted: | 12:24:17 20-05-12 |
Completed: | |
Elapsed: | 00 hrs 03 mins 47 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 96917] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.PRAD.2012_05_15__00_00_15.samplestamp.txt |
annotationid | methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data |
sdrffilename | |
datapathsfile | dependentsValues1192469122638414332.tsv |
Output Files: | |
dcc_archive.properties | |
.lsf.out | |
PRAD.merger.sdrf.txt | |
dcc_archive_manifest.tsv | |
stdout.txt |
Execution Times: | |
Submitted: | 12:24:17 20-05-12 |
Completed: | 12:24:39 20-05-12 |
Elapsed: | 00 hrs 00 mins 21 secs |
step 2. GDAC_MergeDataFiles [id: 96918] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
inputfilelist filename | dependentsValues2831346629149120424.tsv |
output filename | PRAD |
row_column | column |
num_headers | 1 |
filetype | methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data |
Output Files: | |
PRAD.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt | |
.lsf.out |
Execution Times: | |
Submitted: | 12:24:17 20-05-12 |
Completed: | 12:28:02 20-05-12 |
Elapsed: | 00 hrs 03 mins 45 secs |