GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.PRAD.2012_05_15__00_00_15.samplestamp.txt |
GDAC_CreateMergeDataFilesSDRF1 annotationid | snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg |
GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues7400383757460620162.tsv |
GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues474922475311653316.tsv |
GDAC_MergeDataFiles2 output filename | PRAD |
GDAC_MergeDataFiles2 row_column | row |
GDAC_MergeDataFiles2 num_headers | 1 |
GDAC_MergeDataFiles2 filetype | snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.seg |
Execution Times: | |
Submitted: | 12:24:57 20-05-12 |
Completed: | |
Elapsed: | 00 hrs 00 mins 30 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 96935] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.PRAD.2012_05_15__00_00_15.samplestamp.txt |
annotationid | snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg |
sdrffilename | |
datapathsfile | dependentsValues7400383757460620162.tsv |
Output Files: | |
dcc_archive.properties | |
PRAD.merger.sdrf.txt | |
dcc_archive_manifest.tsv | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 12:24:57 20-05-12 |
Completed: | 12:25:13 20-05-12 |
Elapsed: | 00 hrs 00 mins 15 secs |
step 2. GDAC_MergeDataFiles [id: 96936] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
inputfilelist filename | dependentsValues474922475311653316.tsv |
output filename | PRAD |
row_column | row |
num_headers | 1 |
filetype | snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.seg |
Output Files: | |
PRAD.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.seg.txt | |
stdout.txt |
Execution Times: | |
Submitted: | 12:24:58 20-05-12 |
Completed: | 12:25:26 20-05-12 |
Elapsed: | 00 hrs 00 mins 28 secs |