GDAC_DataMergerPipeline Execution Log 11:18 AM Sun May 20, '12

Running as user: cgaadm_deadline

GDAC_CreateMergeDataFilesSDRF1 samplestamp file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.UCEC.2012_05_15__00_00_15.samplestamp.txt
GDAC_CreateMergeDataFilesSDRF1 annotationid protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
GDAC_CreateMergeDataFilesSDRF1 datapathsfile dependentsValues4124290570042728682.tsv
GDAC_DataMerger2 output UCEC.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt
GDAC_DataMerger2 dataPaths dependentsValues8237973718599970229.tsv
Execution Times:
Submitted: 11:18:33 20-05-12
Completed:
Elapsed: 00 hrs 01 mins 01 secs

step 1. GDAC_CreateMergeDataFilesSDRF [id: 96662] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
samplestamp file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.UCEC.2012_05_15__00_00_15.samplestamp.txt
annotationid protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
sdrffilename
datapathsfile dependentsValues4124290570042728682.tsv
Output Files:
 UCEC.merger.sdrf.txt
 dcc_archive.properties
 .lsf.out
 dcc_archive_manifest.tsv
 stdout.txt
Execution Times:
Submitted: 11:18:33 20-05-12
Completed: 11:19:01 20-05-12
Elapsed: 00 hrs 00 mins 28 secs

step 2. GDAC_DataMerger [id: 96663] Merge a list of files into a single file. Validate that all the files have the same columns and row names.

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00481:4
output UCEC.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt
dataPaths dependentsValues8237973718599970229.tsv
Output Files:
 UCEC.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt
 .lsf.out
Execution Times:
Submitted: 11:18:33 20-05-12
Completed: 11:19:32 20-05-12
Elapsed: 00 hrs 00 mins 59 secs