GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.UCEC.2012_05_15__00_00_15.samplestamp.txt |
GDAC_CreateMergeDataFilesSDRF1 annotationid | rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data |
GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues1237727810405612923.tsv |
GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues1975099277988437499.tsv |
GDAC_MergeDataFiles2 output filename | UCEC |
GDAC_MergeDataFiles2 row_column | column |
GDAC_MergeDataFiles2 num_headers | 1 |
GDAC_MergeDataFiles2 filetype | rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data |
Execution Times: | |
Submitted: | 11:19:21 20-05-12 |
Completed: | |
Elapsed: | 00 hrs 01 mins 18 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 96668] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.UCEC.2012_05_15__00_00_15.samplestamp.txt |
annotationid | rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data |
sdrffilename | |
datapathsfile | dependentsValues1237727810405612923.tsv |
Output Files: | |
UCEC.merger.sdrf.txt | |
dcc_archive.properties | |
.lsf.out | |
dcc_archive_manifest.tsv | |
stdout.txt |
Execution Times: | |
Submitted: | 11:19:21 20-05-12 |
Completed: | 11:19:37 20-05-12 |
Elapsed: | 00 hrs 00 mins 15 secs |
step 2. GDAC_MergeDataFiles [id: 96669] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
inputfilelist filename | dependentsValues1975099277988437499.tsv |
output filename | UCEC |
row_column | column |
num_headers | 1 |
filetype | rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data |
Output Files: | |
UCEC.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt | |
.lsf.err | |
stdout.txt |
Execution Times: | |
Submitted: | 11:19:21 20-05-12 |
Completed: | 11:20:36 20-05-12 |
Elapsed: | 00 hrs 01 mins 14 secs |