GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.UCEC.2012_05_15__00_00_15.samplestamp.txt |
GDAC_CreateMergeDataFilesSDRF1 annotationid | snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg |
GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues8674361584245067696.tsv |
GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues3519698171736253871.tsv |
GDAC_MergeDataFiles2 output filename | UCEC |
GDAC_MergeDataFiles2 row_column | row |
GDAC_MergeDataFiles2 num_headers | 1 |
GDAC_MergeDataFiles2 filetype | snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg |
Execution Times: | |
Submitted: | 11:20:55 20-05-12 |
Completed: | |
Elapsed: | 00 hrs 00 mins 41 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 96680] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.UCEC.2012_05_15__00_00_15.samplestamp.txt |
annotationid | snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg |
sdrffilename | |
datapathsfile | dependentsValues8674361584245067696.tsv |
Output Files: | |
UCEC.merger.sdrf.txt | |
dcc_archive.properties | |
.lsf.out | |
dcc_archive_manifest.tsv | |
stdout.txt |
Execution Times: | |
Submitted: | 11:20:56 20-05-12 |
Completed: | 11:21:11 20-05-12 |
Elapsed: | 00 hrs 00 mins 15 secs |
step 2. GDAC_MergeDataFiles [id: 96681] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
inputfilelist filename | dependentsValues3519698171736253871.tsv |
output filename | UCEC |
row_column | row |
num_headers | 1 |
filetype | snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg |
Output Files: | |
UCEC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt | |
.lsf.err | |
stdout.txt |
Execution Times: | |
Submitted: | 11:20:56 20-05-12 |
Completed: | 11:21:35 20-05-12 |
Elapsed: | 00 hrs 00 mins 39 secs |