| GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.BRCA.2012_05_25__00_00_08.samplestamp.txt |
| GDAC_CreateMergeDataFilesSDRF1 annotationid | protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data |
| GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues6449081241336530468.tsv |
| GDAC_DataMerger2 output | BRCA.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt |
| GDAC_DataMerger2 dataPaths | dependentsValues4214659368614298315.tsv |
| Execution Times: | |
| Submitted: | 06:46:16 27-05-12 |
| Completed: | |
| Elapsed: | 00 hrs 01 mins 16 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 102352] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
| samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.BRCA.2012_05_25__00_00_08.samplestamp.txt |
| annotationid | protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data |
| sdrffilename | |
| datapathsfile | dependentsValues6449081241336530468.tsv |
| Output Files: | |
| BRCA.merger.sdrf.txt | |
| dcc_archive.properties | |
| dcc_archive_manifest.tsv | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 06:46:17 27-05-12 |
| Completed: | 06:46:58 27-05-12 |
| Elapsed: | 00 hrs 00 mins 41 secs |
step 2. GDAC_DataMerger [id: 102353] Merge a list of files into a single file. Validate that all the files have the same columns and row names.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00481:4
| output | BRCA.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt |
| dataPaths | dependentsValues4214659368614298315.tsv |
| Output Files: | |
| BRCA.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt | |
| .lsf.out | |
| Execution Times: | |
| Submitted: | 06:46:17 27-05-12 |
| Completed: | 06:47:30 27-05-12 |
| Elapsed: | 00 hrs 01 mins 13 secs |