Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACVR1B	91	genome.wustl.edu	37	12	52374976	52374976	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52374976	52374976	C	G	SNP	ACVR1B	NM_004302	human	genbank	57_37b	+1	reviewed	missense	c.804	p.D268E	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	superfamily_Snake toxin-like,HMMPfam_Activin_recp,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
ADAMTSL1	92949	genome.wustl.edu	37	9	18817201	18817202	+	Missense_Mutation	DNP	GG	GG	CT	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	GG	GG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	18817201	18817202	GG	CT	SNP	ADAMTSL1	NM_001040272	human	genbank	57_37b	+1	validated	missense	c.3900-c.3901	p.Q1300H-p.G1301*	0.004	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMPfam_PLAC	-		
B4GALT6	9331	genome.wustl.edu	37	18	29211065	29211065	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	29211065	29211065	G	A	SNP	B4GALT6	NM_004775	human	genbank	57_37b	-1	reviewed	silent	c.633	p.G211	1.000	superfamily_SSF53448,HMMPfam_Galactosyl_T_2	superfamily_SSF53448,HMMPfam_Galactosyl_T_2	-	no_errors	
C10orf88	80007	genome.wustl.edu	37	10	124708257	124708257	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	124708257	124708257	G	T	SNP	C10orf88	NM_024942	human	genbank	57_37b	-1	validated	missense	c.556	p.L186I	1.000	NULL	PatternScan_ABC_TRANSPORTER_1	-	no_errors	
CACNA1D	776	genome.wustl.edu	37	3	53769505	53769505	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	53769505	53769505	T	A	SNP	CACNA1D	NM_000720	human	genbank	57_37b	+1	validated	missense	c.2786	p.I929N	1.000	superfamily_SSF81324	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors	
CACNA2D3	55799	genome.wustl.edu	37	3	54676226	54676226	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	54676226	54676226	C	T	SNP	CACNA2D3	NM_018398	human	genbank	57_37b	+1	reviewed	silent	c.1125	p.T375	0.998	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	HMMPfam_VWA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Cache_1	-	no_errors	
CASK	8573	genome.wustl.edu	37	X	41413141	41413141	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	41413141	41413141	C	G	SNP	CASK	NM_003688	human	genbank	57_37b	-1	validated	missense	c.1870	p.D624H	1.000	superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2	HMMSmart_S_TKc,HMMPfam_Pkinase,superfamily_Kinase_like,superfamily_SSF101288,HMMSmart_L27,HMMPfam_L27,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2,superfamily_SSF52540,HMMSmart_GuKc,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin	-	no_errors	
CELSR1	9620	genome.wustl.edu	37	22	46759085	46759111	+	Splice_Site	DEL	CTGATGGTTCAAATTGAAGTTTCATTA	CTGATGGTTCAAATTGAAGTTTCATTA	-	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	CTGATGGTTCAAATTGAAGTTTCATTA	CTGATGGTTCAAATTGAAGTTTCATTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	46759085	46759111	CTGATGGTTCAAATTGAAGTTTCATTA	-	DEL	CELSR1	NM_014246	human	genbank	57_37b	-1	reviewed	splice_site_del	c.9036-27_9036-1	e35-1	1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.999:0.998:0.997:0.998:0.998:0.997:0.997:0.997:0.995:0.992:0.995:0.995:0.997:0.998:1.000	-	-	(deletion:intron[46759085,46759892])	no_errors	
COL18A1	80781	genome.wustl.edu	37	21	46888640	46888652	+	Frame_Shift_Del	DEL	GGAGCCTGGCGCC	GGAGCCTGGCGCC	-	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	GGAGCCTGGCGCC	GGAGCCTGGCGCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	46888640	46888652	GGAGCCTGGCGCC	-	DEL	COL18A1	NM_130444	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1836_1848	p.E613fs	0.999:1.000:0.998:0.393:0.212:0.041:0.000:0.354:0.345:0.002:0.024:0.202:0.151	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00210	HMMPfam_DUF959,HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_C-type lectin-like,HMMPfam_Endostatin	(deletion:cds_exon[46888156,46888700])	no_errors	
COL5A3	50509	genome.wustl.edu	37	19	10097018	10097018	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10097018	10097018	C	A	SNP	COL5A3	NM_015719	human	genbank	57_37b	-1	reviewed	missense	c.2325	p.E775D	0.966	HMMPfam_Collagen	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors	
COMP	1311	genome.wustl.edu	37	19	18897405	18897405	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	18897405	18897405	G	A	SNP	COMP	NM_000095	human	genbank	57_37b	-1	reviewed	silent	c.1191	p.D397	1.000	superfamily_SSF103647,HMMPfam_TSP_3	PatternScan_EGF_1,superfamily_SSF57196,HMMSmart_EGF,PatternScan_EGF_CA,HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_2,superfamily_SSF103647,HMMPfam_TSP_3,superfamily_ConA_like_lec_gl,HMMPfam_TSP_C	-	no_errors	
CSMD2	114784	genome.wustl.edu	37	1	34068091	34068091	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	34068091	34068091	G	T	SNP	CSMD2	NM_052896	human	genbank	57_37b	-1	validated	missense	c.6594	p.F2198L	1.000	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC	-	no_errors	
DNAH12	201625	genome.wustl.edu	37	3	57456362	57456362	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	57456362	57456362	T	A	SNP	DNAH12	NM_178504	human	genbank	57_37b	-1	validated	missense	c.1913	p.Y638F	1.000	NULL	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
DOK3	79930	genome.wustl.edu	37	5	176931757	176931757	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176931757	176931757	A	T	SNP	DOK3	NM_024872	human	genbank	57_37b	-1	validated	missense	c.800	p.F267Y	1.000	superfamily_PH domain-like,HMMPfam_IRS,HMMSmart_SM00310	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_IRS,HMMSmart_SM00310	-	no_errors	
DUSP9	1852	genome.wustl.edu	37	X	152915602	152915602	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	152915602	152915602	T	A	SNP	DUSP9	NM_001395	human	genbank	57_37b	+1	reviewed	missense	c.997	p.F333I	1.000	superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc	PatternScan_TYR_PHOSPHATASE_1,superfamily_Rhodanese-like,HMMSmart_RHOD,superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc	-	no_errors	
E2F1	1869	genome.wustl.edu	37	20	32267630	32267630	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	32267630	32267630	T	C	SNP	E2F1	NM_005225	human	genbank	57_37b	-1	reviewed	missense	c.503	p.Y168C	1.000	superfamily_SSF46785,HMMPfam_E2F_TDP	superfamily_SSF46785,HMMPfam_E2F_TDP	-	no_errors	
ECM1	1893	genome.wustl.edu	37	1	150484230	150484230	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150484230	150484230	C	A	SNP	ECM1	NM_004425	human	genbank	57_37b	+1	reviewed	missense	c.1006	p.L336M	0.791	HMMPfam_ECM1	superfamily_Serum albumin-like,HMMPfam_ECM1	-	no_errors	
EDA	1896	genome.wustl.edu	37	X	69247730	69247730	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	69247730	69247730	C	A	SNP	EDA	NM_001399	human	genbank	57_37b	+1	reviewed	missense	c.550	p.P184T	0.997	HMMPfam_Collagen	HMMPfam_Collagen,superfamily_TNF-like,HMMPfam_TNF	-	no_errors	
EFNB1	1947	genome.wustl.edu	37	X	68060252	68060252	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	68060252	68060252	C	T	SNP	EFNB1	NM_004429	human	genbank	57_37b	+1	reviewed	missense	c.796	p.R266C	0.998	NULL	HMMPfam_Ephrin,superfamily_Cupredoxin,PatternScan_EPHRIN	-	no_errors	
ENSG00000179821	0	genome.wustl.edu	37	12	105370677	105370677	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	105370677	105370677	C	T	SNP	ENSG00000179821	ENST00000312876	human	ensembl	57_37b	-1	known	missense	c.1112	p.R371H	0.866	HMMPfam_Filament,PatternScan_IF	HMMPfam_Filament,PatternScan_IF	-	no_errors	
ENSG00000228388	0	genome.wustl.edu	37	1	32834301	32834302	+	RNA	INS	-	-	TTTG	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32834301	32834302	-	TTTG	INS	ENSG00000228388	ENST00000424314	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.006:0.009	-	-	-	no_errors	
ENSG00000231360	0	genome.wustl.edu	37	1	29843392	29843392	+	Silent	SNP	T	C	C	rs4995377	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A04R-01	TCGA-A2-A04R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	29843392	29843392	T	C	SNP	ENSG00000231360	ENST00000455342	human	ensembl	57_37b	-1	known	silent	c.483	p.E161	0.000	NULL	NULL	-		
EXPH5	23086	genome.wustl.edu	37	11	108381259	108381259	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	108381259	108381259	A	T	SNP	EXPH5	NM_015065	human	genbank	57_37b	-1	validated	missense	c.4975	p.L1659M	0.000	NULL	NULL	-	no_errors	
FAM107B	83641	genome.wustl.edu	37	10	14816305	14816305	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	14816305	14816305	C	A	SNP	FAM107B	NM_031453	human	genbank	57_37b	-1	predicted	missense	c.358	p.A120S	0.000	NULL	HMMPfam_DUF1151	-	no_errors	
FAM114A2	10827	genome.wustl.edu	37	5	153374519	153374519	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	153374519	153374519	G	A	SNP	FAM114A2	NM_018691	human	genbank	57_37b	-1	validated	missense	c.1343	p.A448V	1.000	NULL	HMMPfam_DUF719	-	no_errors	
FAM135B	51059	genome.wustl.edu	37	8	139255184	139255184	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	139255184	139255184	C	A	SNP	FAM135B	NM_015912	human	genbank	57_37b	-1	validated	splice_site	c.669+1	e6+1	1.000	-	-	-	no_errors	
FAM155A	728215	genome.wustl.edu	37	13	108518417	108518417	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	108518417	108518417	C	T	SNP	FAM155A	NM_001080396	human	genbank	57_37b	-1	validated	silent	c.528	p.A176	0.984	NULL	NULL	-	no_errors	
FAM167A	83648	genome.wustl.edu	37	8	11301703	11301703	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	11301703	11301703	T	A	SNP	FAM167A	NM_053279	human	genbank	57_37b	-1	validated	missense	c.218	p.E73V	0.011	NULL	NULL	-	no_errors	
FAM69C	125704	genome.wustl.edu	37	18	72114459	72114459	+	Silent	SNP	C	G	G	rs9958963	byCluster;byFrequency;by1000genomes	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	72114459	72114459	C	G	SNP	FAM69C	NM_001044369	human	genbank	57_37b	-1	validated	silent	c.258	p.A86	0.016	NULL	NULL	-		
FBN3	84467	genome.wustl.edu	37	19	8171110	8171110	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	8171110	8171110	G	C	SNP	FBN3	NM_032447	human	genbank	57_37b	-1	reviewed	missense	c.4695	p.D1565E	0.994	superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179	HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Growth factor receptor domain	-	no_errors	
FMN1	342184	genome.wustl.edu	37	15	33359400	33359400	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	33359400	33359400	C	T	SNP	FMN1	NM_001103184	human	genbank	57_37b	-1	inferred	missense	c.686	p.R229H	0.000	NULL	superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2	-	no_errors	
FRMD6	122786	genome.wustl.edu	37	14	52186774	52186774	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	52186774	52186774	G	T	SNP	FRMD6	NM_001042481	human	genbank	57_37b	+1	validated	missense	c.1002	p.E334D	0.998	superfamily_SSF50729	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,superfamily_FERM_3-hlx,HMMPfam_FERM_M,superfamily_SSF50729,HMMPfam_FERM_C	-	no_errors	
FUT11	170384	genome.wustl.edu	37	10	75532267	75532267	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	75532267	75532267	C	A	SNP	FUT11	NM_173540	human	genbank	57_37b	+1	validated	missense	c.176	p.T59K	1.000	HMMPfam_Glyco_transf_10	HMMPfam_Glyco_transf_10	-	no_errors	
GCC2	9648	genome.wustl.edu	37	2	109100752	109100752	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	109100752	109100752	C	G	SNP	GCC2	NM_181453	human	genbank	57_37b	+1	reviewed	missense	c.3598	p.L1200V	0.891	NULL	HMMPfam_GRIP,HMMSmart_Grip	-	no_errors	
GIMAP6	474344	genome.wustl.edu	37	7	150325167	150325167	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150325167	150325167	C	G	SNP	GIMAP6	NM_024711	human	genbank	57_37b	-1	reviewed	silent	c.519	p.L173	0.440	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AIG1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AIG1	-	no_errors	
GIMAP6	474344	genome.wustl.edu	37	7	150325173	150325173	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150325173	150325173	G	T	SNP	GIMAP6	NM_024711	human	genbank	57_37b	-1	reviewed	silent	c.513	p.G171	0.025	HMMPfam_AIG1,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_AIG1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
GPR179	440435	genome.wustl.edu	37	17	36485058	36485058	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	36485058	36485058	C	T	SNP	GPR179	NM_001004334	human	genbank	57_37b	-1	validated	nonsense	c.4394	p.W1465*	0.975	NULL	PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMSmart_EGF,HMMPfam_7tm_3	-	no_errors	
GRM3	2913	genome.wustl.edu	37	7	86415883	86415883	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	86415883	86415883	G	C	SNP	GRM3	NM_000840	human	genbank	57_37b	+1	reviewed	missense	c.775	p.V259L	1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors	
GTPBP5	26164	genome.wustl.edu	37	20	60770921	60770921	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60770921	60770921	A	C	SNP	GTPBP5	NM_015666	human	genbank	57_37b	+1	validated	missense	c.268	p.S90R	0.584	superfamily_GTP1_OBG_sub,HMMPfam_GTP1_OBG	superfamily_GTP1_OBG_sub,HMMPfam_GTP1_OBG,HMMPfam_MMR_HSR1,superfamily_SSF52540	-	no_errors	
HECW2	57520	genome.wustl.edu	37	2	197143359	197143359	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	197143359	197143359	T	C	SNP	HECW2	NM_020760	human	genbank	57_37b	-1	provisional	missense	c.3028	p.T1010A	0.820	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1	HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors	
HGFAC	3083	genome.wustl.edu	37	4	3446112	3446112	+	Missense_Mutation	SNP	G	G	A	rs16844370	byCluster;byFrequency;by1000genomes	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	3446112	3446112	G	A	SNP	HGFAC	NM_001528	human	genbank	57_37b	+1	reviewed	missense	c.673	p.V225M	0.815	HMMPfam_fn1,PatternScan_FN1_1,HMMSmart_FN1	superfamily_Kringle-like,HMMSmart_FN2,HMMPfam_fn2,PatternScan_FN2_1,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,HMMPfam_fn1,PatternScan_FN1_1,HMMSmart_FN1,PatternScan_EGF_2,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-		
HIST1H2AL	8332	genome.wustl.edu	37	6	27833360	27833360	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	27833360	27833360	G	C	SNP	HIST1H2AL	NM_003511	human	genbank	57_37b	+1	reviewed	missense	c.228	p.K76N	1.000	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A	-	no_errors	
HNRNPA3	220988	genome.wustl.edu	37	2	178080348	178080348	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	178080348	178080348	C	T	SNP	HNRNPA3	NM_194247	human	genbank	57_37b	+1	validated	nonsense	c.154	p.R52*	1.000	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
IFLTD1	160492	genome.wustl.edu	37	12	25679085	25679085	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	25679085	25679085	T	G	SNP	IFLTD1	NM_001145728	human	genbank	57_37b	-1	validated	missense	c.746	p.K249T	0.238	superfamily_Lamin A/C globular tail domain,HMMPfam_IF_tail	superfamily_Lamin A/C globular tail domain,HMMPfam_IF_tail	-	no_errors	
IL1RAPL1	11141	genome.wustl.edu	37	X	29935650	29935650	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	29935650	29935650	G	T	SNP	IL1RAPL1	NM_014271	human	genbank	57_37b	+1	reviewed	missense	c.848	p.W283L	1.000	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	-	no_errors	
IQCB1	9657	genome.wustl.edu	37	3	121507139	121507139	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121507139	121507139	G	C	SNP	IQCB1	NM_001023570	human	genbank	57_37b	-1	reviewed	missense	c.1270	p.Q424E	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ	-	no_errors	
KCND2	3751	genome.wustl.edu	37	7	119915612	119915612	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	119915612	119915612	G	T	SNP	KCND2	NM_012281	human	genbank	57_37b	+1	reviewed	missense	c.926	p.G309V	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors	
KIAA0802	23255	genome.wustl.edu	37	18	8825192	8825192	+	Silent	SNP	A	A	G	rs581894	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A04R-01	TCGA-A2-A04R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	8825192	8825192	A	G	SNP	KIAA0802	NM_015210	human	genbank	57_37b	+1	predicted	silent	c.3684	p.G1228	0.004	NULL	NULL	-		
KRTAP11-1	337880	genome.wustl.edu	37	21	32253424	32253424	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	32253424	32253424	G	C	SNP	KRTAP11-1	NM_175858	human	genbank	57_37b	-1	validated	silent	c.420	p.V140	0.785	HMMPfam_PMG	HMMPfam_PMG	-	no_errors	
LCE2A	353139	genome.wustl.edu	37	1	152671581	152671581	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152671581	152671581	C	-	DEL	LCE2A	NM_178428	human	genbank	57_37b	+1	validated	frame_shift_del	c.204	p.L69fs	0.182	NULL	NULL	(deletion:cds_exon[152671378,152671698])	no_errors	
LCE2A	353139	genome.wustl.edu	37	1	152671582	152671582	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152671582	152671582	C	G	SNP	LCE2A	NM_178428	human	genbank	57_37b	+1	validated	missense	c.205	p.L69V	0.173	NULL	NULL	-	no_errors	
LOC100292681	0	genome.wustl.edu	37	12	2227929	2227929	+	Missense_Mutation	SNP	A	G	G	rs7314367	byCluster;byFrequency;by1000genomes	TCGA-A2-A04R-01	TCGA-A2-A04R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	2227929	2227929	A	G	SNP	LOC100292681	XM_002344671	human	genbank	57_37b	-1	model	missense	c.100	p.F34L	0.000	NULL	NULL	-		
LOC643827	0	genome.wustl.edu	37	9	65595103	65595103	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	65595103	65595103	C	A	SNP	LOC643827	XM_001714537	human	genbank	57_37b	+1	model	silent	c.871	p.R291	0.978	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Fibrinogen C-terminal domain-like	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00181,HMMPfam_EGF,superfamily_Fibrinogen C-terminal domain-like,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_GLYCO_HORMONE_BETA_1	-	no_errors	
LRIT1	26103	genome.wustl.edu	37	10	85993929	85993929	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	85993929	85993929	G	A	SNP	LRIT1	NM_015613	human	genbank	57_37b	-1	validated	silent	c.795	p.S265	0.698	superfamily_SSF52058,superfamily_SSF48726	HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like	-	no_errors	
LRP2	4036	genome.wustl.edu	37	2	170177381	170177381	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	170177381	170177381	C	T	SNP	LRP2	NM_004525	human	genbank	57_37b	-1	reviewed	silent	c.93	p.A31	0.000	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_2,superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b,superfamily_SSF57196,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1	-	no_errors	
MASTL	84930	genome.wustl.edu	37	10	27454445	27454445	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	27454445	27454445	A	T	SNP	MASTL	NM_032844	human	genbank	57_37b	+1	reviewed	missense	c.788	p.Y263F	0.204	superfamily_Kinase_like	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X	-	no_errors	
MEGF8	1954	genome.wustl.edu	37	19	42861080	42861080	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42861080	42861080	A	T	SNP	MEGF8	NM_001410	human	genbank	57_37b	+1	validated	missense	c.4576	p.T1526S	0.601	superfamily_Gal_oxid_central,HMMPfam_Kelch_1	superfamily_CUB,HMMSmart_CUB,HMMPfam_CUB,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_PSI,PatternScan_C_TYPE_LECTIN_1,HMMPfam_PSI,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,superfamily_SSF57196,PatternScan_ASX_HYDROXYL,HMMPfam_Laminin_EGF,PatternScan_EGF_LAM_1,HMMSmart_EGF_Lam	-	no_errors	
MPO	4353	genome.wustl.edu	37	17	56348081	56348081	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56348081	56348081	C	T	SNP	MPO	NM_000250	human	genbank	57_37b	-1	reviewed	missense	c.2174	p.R725Q	0.007	superfamily_Heme-dependent peroxidases	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,PatternScan_PEROXIDASE_1	-	no_errors	
NALCN	259232	genome.wustl.edu	37	13	101712242	101712242	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	101712242	101712242	C	T	SNP	NALCN	NM_052867	human	genbank	57_37b	-1	validated	silent	c.4833	p.P1611	0.079	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors	
NOS3	4846	genome.wustl.edu	37	7	150698415	150698415	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150698415	150698415	G	A	SNP	NOS3	NM_000603	human	genbank	57_37b	+1	reviewed	missense	c.1330	p.D444N	1.000	superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_NO_synthase	superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_NO_synthase,PatternScan_NOS,superfamily_Flavoproteins,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1	-	no_errors	
NPAS3	64067	genome.wustl.edu	37	14	34269056	34269056	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	34269056	34269056	G	A	SNP	NPAS3	NM_173159	human	genbank	57_37b	+1	reviewed	missense	c.1504	p.D502N	1.000	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH,HMMPfam_PAS,HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC	-	no_errors	
NPAS4	266743	genome.wustl.edu	37	11	66191919	66191919	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66191919	66191919	C	G	SNP	NPAS4	NM_178864	human	genbank	57_37b	+1	validated	missense	c.1558	p.P520A	1.000	NULL	HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3	-	no_errors	
NR6A1	2649	genome.wustl.edu	37	9	127316626	127316626	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	127316626	127316626	C	G	SNP	NR6A1	NM_033334	human	genbank	57_37b	-1	reviewed	missense	c.366	p.Q122H	1.000	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors	
ODZ3	55714	genome.wustl.edu	37	4	183594306	183594306	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	183594306	183594306	C	A	SNP	ODZ3	NM_001080477	human	genbank	57_37b	+1	provisional	silent	c.1260	p.I420	1.000	NULL	HMMPfam_Ten_N,HMMPfam_EGF_2,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196,HMMSmart_EGF,superfamily_CarboxypepD_reg,superfamily_SSF101898,HMMPfam_NHL,superfamily_SSF63829,HMMPfam_RHS_repeat	-	no_errors	
OR10G2	26534	genome.wustl.edu	37	14	22102870	22102870	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	22102870	22102870	C	G	SNP	OR10G2	NM_001005466	human	genbank	57_37b	-1	validated	missense	c.129	p.Q43H	0.994	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors	
OR11H4	390442	genome.wustl.edu	37	14	20711110	20711110	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	20711110	20711110	G	T	SNP	OR11H4	NM_001004479	human	genbank	57_37b	+1	provisional	missense	c.160	p.A54S	0.002	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OSBPL2	9885	genome.wustl.edu	37	20	60868880	60868880	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60868880	60868880	C	A	SNP	OSBPL2	ENST00000439951	human	ensembl	57_37b	+1	known	missense	c.980	p.P327Q	0.709	HMMPfam_Oxysterol_BP	HMMPfam_Oxysterol_BP,PatternScan_OSBP	-	no_errors	
PEX26	55670	genome.wustl.edu	37	22	18562697	18562697	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	18562697	18562697	G	A	SNP	PEX26	NM_001127649	human	genbank	57_37b	+1	reviewed	missense	c.288	p.M96I	1.000	HMMPfam_Pex26	HMMPfam_Pex26	-	no_errors	
PLAT	5327	genome.wustl.edu	37	8	42033530	42033530	+	Missense_Mutation	SNP	C	C	G	rs62001884	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	42033530	42033530	C	G	SNP	PLAT	NM_000930	human	genbank	57_37b	-1	reviewed	missense	c.1670	p.R557P	0.001	superfamily_Trypsin-like serine proteases	superfamily_Fibronectin type I module,HMMPfam_fn1,PatternScan_FN1_1,HMMSmart_SM00058,HMMPfam_EGF,superfamily_Kringle-like,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-		
POLH	5429	genome.wustl.edu	37	6	43578461	43578461	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43578461	43578461	G	T	SNP	POLH	NM_006502	human	genbank	57_37b	+1	reviewed	splice_site	c.1244+1	e9+1	1.000	-	-	-	no_errors	
POLR2B	5431	genome.wustl.edu	37	4	57888327	57888327	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	57888327	57888327	C	T	SNP	POLR2B	NM_000938	human	genbank	57_37b	+1	reviewed	silent	c.2430	p.F810	1.000	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_6	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1,HMMPfam_RNA_pol_Rpb2_2,HMMPfam_RNA_pol_Rpb2_3,HMMPfam_RNA_pol_Rpb2_4,HMMPfam_RNA_pol_Rpb2_5,HMMPfam_RNA_pol_Rpb2_6,PatternScan_RNA_POL_BETA,HMMPfam_RNA_pol_Rpb2_7	-	no_errors	
PTCHD1	139411	genome.wustl.edu	37	X	23411288	23411288	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	23411288	23411288	C	A	SNP	PTCHD1	NM_173495	human	genbank	57_37b	+1	validated	missense	c.1653	p.N551K	1.000	HMMPfam_Patched	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors	
PTTG2	10744	genome.wustl.edu	37	4	37962151	37962151	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	37962151	37962151	C	T	SNP	PTTG2	NM_006607	human	genbank	57_37b	+1	validated	silent	c.96	p.I32	0.000	HMMPfam_Securin	HMMPfam_Securin	-	no_errors	
RAPGEF6	51735	genome.wustl.edu	37	5	130785738	130785738	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	130785738	130785738	T	G	SNP	RAPGEF6	ENST00000307984	human	ensembl	57_37b	-1	known	missense	c.2338	p.K780Q	1.000	superfamily_Ras GEF,HMMSmart_SM00147	HMMSmart_SM00100,superfamily_cAMP-binding domain-like,HMMPfam_cNMP_binding,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMPfam_PDZ,superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_RA,HMMSmart_SM00314,HMMSmart_SM00147,HMMPfam_RasGEF	-	no_errors	
RNF123	63891	genome.wustl.edu	37	3	49751012	49751012	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49751012	49751012	T	C	SNP	RNF123	NM_022064	human	genbank	57_37b	+1	reviewed	missense	c.2741	p.V914A	1.000	NULL	HMMPfam_SPRY,HMMSmart_SM00449,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors	
RTTN	25914	genome.wustl.edu	37	18	67721498	67721498	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	67721498	67721498	A	G	SNP	RTTN	NM_173630	human	genbank	57_37b	-1	validated	missense	c.5054	p.L1685P	0.997	NULL	superfamily_ARM repeat	-	no_errors	
SCN11A	11280	genome.wustl.edu	37	3	38991797	38991797	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	38991797	38991797	G	T	SNP	SCN11A	NM_014139	human	genbank	57_37b	-1	validated	missense	c.57	p.F19L	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc	-	no_errors	
SIGLEC12	89858	genome.wustl.edu	37	19	52004714	52004714	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52004714	52004714	G	T	SNP	SIGLEC12	NM_053003	human	genbank	57_37b	-1	reviewed	silent	c.274	p.R92	0.039	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_C2-set_2,HMMPfam_ig	-	no_errors	
SPRY4	81848	genome.wustl.edu	37	5	141694299	141694299	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	141694299	141694299	T	A	SNP	SPRY4	NM_030964	human	genbank	57_37b	-1	validated	silent	c.444	p.S148	0.002	NULL	HMMPfam_Sprouty	-	no_errors	
SYNM	23336	genome.wustl.edu	37	15	99645494	99645494	+	Missense_Mutation	SNP	G	G	A	rs113288259	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	99645494	99645494	G	A	SNP	SYNM	ENST00000336292	human	ensembl	57_37b	+1	known	missense	c.89	p.R30Q	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-		
TM7SF3	51768	genome.wustl.edu	37	12	27127095	27127095	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	27127095	27127095	C	A	SNP	TM7SF3	NM_016551	human	genbank	57_37b	-1	validated	nonsense	c.1516	p.E506*	1.000	NULL	NULL	-	no_errors	
TRAF3	7187	genome.wustl.edu	37	14	103336784	103336784	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	103336784	103336784	G	T	SNP	TRAF3	NM_003300	human	genbank	57_37b	+1	reviewed	splice_site	c.245+1	e1+1	1.000	-	-	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179457975	179457975	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179457975	179457975	C	A	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.51250	p.V17084F	1.000	HMMSmart_SM00060,HMMPfam_fn3	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
TUBGCP2	10844	genome.wustl.edu	37	10	135113545	135113545	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	135113545	135113545	T	C	SNP	TUBGCP2	NM_006659	human	genbank	57_37b	-1	validated	missense	c.223	p.T75A	0.070	NULL	HMMPfam_Spc97_Spc98	-	no_errors	
USE1	55850	genome.wustl.edu	37	19	17330504	17330504	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17330504	17330504	G	A	SNP	USE1	NM_018467	human	genbank	57_37b	+1	validated	missense	c.662	p.R221H	1.000	HMMPfam_Use1	HMMPfam_Use1	-	no_errors	
USP46	64854	genome.wustl.edu	37	4	53468079	53468079	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	53468079	53468079	A	G	SNP	USP46	NM_022832	human	genbank	57_37b	-1	validated	silent	c.864	p.D288	0.539	superfamily_Cysteine proteinases,HMMPfam_UCH	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
VSTM2B	342865	genome.wustl.edu	37	19	30054804	30054804	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	30054804	30054804	C	A	SNP	VSTM2B	ENST00000335523	human	ensembl	57_37b	+1	known	missense	c.821	p.A274D	0.982	NULL	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG	-	no_errors	
WWC1	23286	genome.wustl.edu	37	5	167881043	167881045	+	In_Frame_Del	DEL	GGA	GGA	-	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	GGA	GGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	167881043	167881045	GGA	-	DEL	WWC1	NM_015238	human	genbank	57_37b	+1	reviewed	in_frame_del	c.2596_2598	p.G866in_frame_del	0.441:0.365:0.522	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	(deletion:cds_exon[167880973,167881105])	no_errors	
ZFPM2	23414	genome.wustl.edu	37	8	106813723	106813723	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	106813723	106813723	G	T	SNP	ZFPM2	NM_012082	human	genbank	57_37b	+1	reviewed	missense	c.1413	p.K471N	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF229	7772	genome.wustl.edu	37	19	44933974	44933974	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	44933974	44933974	G	A	SNP	ZNF229	NM_014518	human	genbank	57_37b	-1	validated	missense	c.982	p.R328W	0.001	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF238	10472	genome.wustl.edu	37	1	244218516	244218516	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	244218516	244218516	C	T	SNP	ZNF238	NM_205768	human	genbank	57_37b	+1	validated	silent	c.1440	p.C480	0.986	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF562	54811	genome.wustl.edu	37	19	9768710	9768710	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9768710	9768710	C	G	SNP	ZNF562	NM_001130031	human	genbank	57_37b	-1	validated	missense	c.216	p.E72D	0.999	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF571	51276	genome.wustl.edu	37	19	38055665	38055665	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38055665	38055665	C	A	SNP	ZNF571	NM_016536	human	genbank	57_37b	-1	validated	missense	c.1665	p.E555D	1.000	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF592	9640	genome.wustl.edu	37	15	85325940	85325940	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04R-01	TCGA-A2-A04R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	85325940	85325940	C	A	SNP	ZNF592	NM_014630	human	genbank	57_37b	+1	validated	missense	c.34	p.L12I	1.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors	
