Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACAT2	39	genome.wustl.edu	37	6	160189620	160189620	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	160189620	160189620	T	A	SNP	ACAT2	NM_005891	human	genbank	57_37b	+1	reviewed	silent	c.450	p.G150	0.983	HMMPfam_Thiolase_N,superfamily_Thiolase-like	PatternScan_THIOLASE_1,HMMPfam_Thiolase_N,superfamily_Thiolase-like,HMMPfam_Thiolase_C,PatternScan_THIOLASE_2,PatternScan_THIOLASE_3	-	no_errors	
ARHGAP10	79658	genome.wustl.edu	37	4	148985600	148985600	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	148985600	148985600	G	A	SNP	ARHGAP10	NM_024605	human	genbank	57_37b	+1	validated	silent	c.2214	p.P738	0.022	superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3	-	no_errors	
C20orf186	149954	genome.wustl.edu	37	20	31671605	31671605	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	31671605	31671605	G	A	SNP	C20orf186	NM_182519	human	genbank	57_37b	+1	validated	missense	c.602	p.G201E	0.997	HMMSmart_SM00328,HMMPfam_LBP_BPI_CETP	HMMSmart_SM00328,HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI,HMMSmart_SM00329,HMMPfam_LBP_BPI_CETP_C	-	no_errors	
C8orf40	114926	genome.wustl.edu	37	8	42407725	42407725	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	42407725	42407725	G	A	SNP	C8orf40	NM_001135674	human	genbank	57_37b	+1	validated	missense	c.298	p.D100N	1.000	NULL	NULL	-	no_errors	
CRY2	1408	genome.wustl.edu	37	11	45882531	45882531	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	45882531	45882531	G	A	SNP	CRY2	NM_021117	human	genbank	57_37b	+1	validated	silent	c.663	p.E221	1.000	superfamily_DNA_photolyase_N	superfamily_DNA_photolyase_N,HMMPfam_DNA_photolyase,superfamily_Photolyase_FAD-bd/Cryptochr_C,HMMPfam_FAD_binding_7	-	no_errors	
DCAF4L2	138009	genome.wustl.edu	37	8	88885215	88885215	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	88885215	88885215	C	T	SNP	DCAF4L2	NM_152418	human	genbank	57_37b	-1	validated	missense	c.985	p.V329M	0.993	superfamily_WD40_like,HMMSmart_WD40	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	no_errors	
DDIT4L	115265	genome.wustl.edu	37	4	101108852	101108852	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	101108852	101108852	T	C	SNP	DDIT4L	NM_145244	human	genbank	57_37b	-1	provisional	silent	c.564	p.T188	0.999	NULL	HMMPfam_RTP801_C	-	no_errors	
ECH1	1891	genome.wustl.edu	37	19	39306943	39306943	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39306943	39306943	G	-	DEL	ECH1	NM_001398	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.712	p.L238fs	0.998	superfamily_SSF52096,HMMPfam_ECH	superfamily_SSF52096,HMMPfam_ECH,PatternScan_ENOYL_COA_HYDRATASE	(deletion:cds_exon[39306924,39306995])	no_errors	
EML6	0	genome.wustl.edu	37	2	55119763	55119763	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	55119763	55119763	G	T	SNP	EML6	NM_001039753	human	genbank	57_37b	+1	validated	silent	c.2712	p.G904	0.997	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320	HMMPfam_HELP,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1	-	no_errors	
ENSG00000185040	0	genome.wustl.edu	37	7	76169673	76169673	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	76169673	76169673	G	C	SNP	ENSG00000185040	ENST00000448019	human	ensembl	57_37b	-1	known	missense	c.31	p.L11V	0.237	NULL	NULL	-	no_errors	
ENSG00000225846	0	genome.wustl.edu	37	4	76957974	76957974	+	Missense_Mutation	SNP	T	T	C	rs6532114	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	76957974	76957974	T	C	SNP	ENSG00000225846	ENST00000446032	human	ensembl	57_37b	-1	known	missense	c.244	p.T82A	0.649	HMMPfam_Ribosomal_L36e	HMMPfam_Ribosomal_L36e	-		
ENSG00000246683	0	genome.wustl.edu	37	17	27403247	27403247	+	RNA	DEL	T	T	-	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	27403247	27403247	T	-	DEL	ENSG00000246683	ENST00000500792	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.002	-	-	(deletion:rna[27400539,27404325])	no_errors	
FFAR1	2864	genome.wustl.edu	37	19	35843061	35843061	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	35843061	35843061	G	A	SNP	FFAR1	NM_005303	human	genbank	57_37b	+1	reviewed	missense	c.607	p.V203M	0.998	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
FMO5	2330	genome.wustl.edu	37	1	146680607	146680607	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	146680607	146680607	G	T	SNP	FMO5	NM_001461	human	genbank	57_37b	-1	reviewed	missense	c.637	p.L213I	1.000	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FMO-like,superfamily_NAD(P)-binding Rossmann-fold domains	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FMO-like,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors	
GPR98	84059	genome.wustl.edu	37	5	90052316	90052316	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	90052316	90052316	G	T	SNP	GPR98	NM_032119	human	genbank	57_37b	+1	reviewed	nonsense	c.11626	p.E3876*	0.000	NULL	HMMSmart_SM00237,HMMPfam_Calx-beta,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP,PatternScan_A_DEAMINASE,PatternScan_LIPOYL,HMMPfam_GPS	-	no_errors	
GRIN1	2902	genome.wustl.edu	37	9	140052856	140052856	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140052856	140052856	G	C	SNP	GRIN1	NM_007327	human	genbank	57_37b	+1	reviewed	missense	c.994	p.D332H	0.966	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like II,HMMSmart_SM00079,HMMPfam_Lig_chan-Glu_bd,superfamily_Voltage-gated potassium channels,HMMPfam_Lig_chan,HMMPfam_CaM_bdg_C0	-	no_errors	
GYLTL1B	120071	genome.wustl.edu	37	11	45945095	45945095	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	45945095	45945095	G	-	DEL	GYLTL1B	NM_152312	human	genbank	57_37b	+1	validated	frame_shift_del	c.357	p.M119fs	0.970	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8	(deletion:cds_exon[45945024,45945106])	no_errors	
HDLBP	3069	genome.wustl.edu	37	2	242202140	242202140	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	242202140	242202140	T	C	SNP	HDLBP	NM_005336	human	genbank	57_37b	-1	validated	missense	c.436	p.R146G	0.030	superfamily_SSF54791	superfamily_SSF54791,HMMSmart_KH,HMMPfam_KH_1	-	no_errors	
HELZ	9931	genome.wustl.edu	37	17	65184713	65184713	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	65184713	65184713	C	T	SNP	HELZ	NM_014877	human	genbank	57_37b	-1	validated	missense	c.884	p.R295H	1.000	NULL	superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH,superfamily_SSF52540,HMMPfam_PAM2	-	no_errors	
IDH3G	3421	genome.wustl.edu	37	X	153055671	153055671	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153055671	153055671	A	G	SNP	IDH3G	NM_004135	human	genbank	57_37b	-1	reviewed	missense	c.212	p.L71P	0.943	superfamily_SSF53659,HMMPfam_Iso_dh	superfamily_SSF53659,HMMPfam_Iso_dh,PatternScan_IDH_IMDH	-	no_errors	
IGF2R	3482	genome.wustl.edu	37	6	160489290	160489290	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	160489290	160489290	T	C	SNP	IGF2R	NM_000876	human	genbank	57_37b	+1	reviewed	silent	c.4125	p.A1375	1.000	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain	superfamily_Mannose 6-phosphate receptor domain,HMMPfam_CIMR,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1	-	no_errors	
KCNA5	3741	genome.wustl.edu	37	12	5153647	5153647	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	5153647	5153647	C	T	SNP	KCNA5	NM_002234	human	genbank	57_37b	+1	reviewed	silent	c.334	p.L112	0.003	NULL	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors	
KIAA2026	158358	genome.wustl.edu	37	9	6007235	6007235	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	6007235	6007235	G	A	SNP	KIAA2026	NM_001017969	human	genbank	57_37b	-1	validated	silent	c.553	p.L185	1.000	superfamily_Bromodomain	superfamily_Bromodomain	-	no_errors	
LRP12	29967	genome.wustl.edu	37	8	105503535	105503535	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	105503535	105503535	G	A	SNP	LRP12	NM_013437	human	genbank	57_37b	-1	reviewed	missense	c.1946	p.S649F	1.000	NULL	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1	-	no_errors	
MAML3	55534	genome.wustl.edu	37	4	140811603	140811603	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	140811603	140811603	G	A	SNP	MAML3	NM_018717	human	genbank	57_37b	-1	validated	silent	c.987	p.F329	1.000	NULL	HMMPfam_MamL-1	-	no_errors	
MKI67	4288	genome.wustl.edu	37	10	129921415	129921415	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	129921415	129921415	G	A	SNP	MKI67	NM_002417	human	genbank	57_37b	-1	reviewed	silent	c.111	p.I37	0.933	superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA	superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,HMMPfam_K167R	-	no_errors	
MNAT1	4331	genome.wustl.edu	37	14	61285489	61285489	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	61285489	61285489	G	C	SNP	MNAT1	NM_002431	human	genbank	57_37b	+1	validated	missense	c.611	p.R204T	1.000	HMMPfam_MAT1	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_MAT1	-	no_errors	
MUC16	94025	genome.wustl.edu	37	19	9084121	9084121	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9084121	9084121	G	A	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	missense	c.7694	p.T2565M	0.183	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors	
MYT1L	23040	genome.wustl.edu	37	2	1843052	1843052	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	1843052	1843052	C	G	SNP	MYT1L	NM_015025	human	genbank	57_37b	-1	validated	missense	c.2943	p.K981N	1.000	superfamily_SSF103637	superfamily_SSF103637,HMMPfam_zf-C2HC,HMMPfam_MYT1,PatternScan_EF_HAND_1	-	no_errors	
NARFL	64428	genome.wustl.edu	37	16	787259	787260	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	787259	787260	-	C	INS	NARFL	NM_022493	human	genbank	57_37b	-1	provisional	frame_shift_ins	c.233_232	p.I78fs	1.000:1.000	superfamily_Fe-only hydrogenase	superfamily_Fe-only hydrogenase,HMMPfam_Fe_hyd_lg_C	-	no_errors	
NAT8	9027	genome.wustl.edu	37	2	73868674	73868674	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	73868674	73868674	G	T	SNP	NAT8	NM_003960	human	genbank	57_37b	-1	reviewed	missense	c.82	p.H28N	0.987	superfamily_Acyl_CoA_acyltransferase	superfamily_Acyl_CoA_acyltransferase,HMMPfam_Acetyltransf_1	-	no_errors	
NPSR1	387129	genome.wustl.edu	37	7	34851391	34851391	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	34851391	34851391	C	T	SNP	NPSR1	NM_207173	human	genbank	57_37b	+1	reviewed	missense	c.394	p.L132F	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
NXF3	56000	genome.wustl.edu	37	X	102339332	102339332	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	102339332	102339332	G	C	SNP	NXF3	NM_022052	human	genbank	57_37b	-1	reviewed	missense	c.289	p.P97A	0.143	NULL	superfamily_RNA-binding domain RBD,HMMPfam_Tap-RNA_bind,superfamily_NTF2-like,HMMPfam_NTF2	-	no_errors	
OR5A1	219982	genome.wustl.edu	37	11	59211431	59211431	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	59211431	59211431	C	T	SNP	OR5A1	NM_001004728	human	genbank	57_37b	+1	provisional	nonsense	c.790	p.R264*	0.337	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PDE6A	5145	genome.wustl.edu	37	5	149310672	149310672	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	149310672	149310672	G	A	SNP	PDE6A	NM_000440	human	genbank	57_37b	-1	reviewed	silent	c.777	p.F259	1.000	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781	superfamily_SSF55781,HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors	
PDHA1	5160	genome.wustl.edu	37	X	19371264	19371264	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	19371264	19371264	C	T	SNP	PDHA1	NM_000284	human	genbank	57_37b	+1	validated	silent	c.483	p.Y161	0.996	superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_E1_dh	superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_E1_dh	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1624	p.E542K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PLCL2	23228	genome.wustl.edu	37	3	17053177	17053177	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	17053177	17053177	A	T	SNP	PLCL2	NM_015184	human	genbank	57_37b	+1	validated	missense	c.1961	p.D654V	1.000	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
PRRT4	0	genome.wustl.edu	37	7	127999474	127999474	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	127999474	127999474	G	A	SNP	PRRT4	NM_001114726	human	genbank	57_37b	-1	validated	missense	c.572	p.T191M	0.973	NULL	NULL	-	no_errors	
RNF133	168433	genome.wustl.edu	37	7	122338268	122338268	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	122338268	122338268	T	G	SNP	RNF133	NM_139175	human	genbank	57_37b	-1	reviewed	silent	c.705	p.G235	0.025	NULL	PatternScan_ZF_RING_1,superfamily_SSF52025,HMMPfam_PA,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	-	no_errors	
SALL1	6299	genome.wustl.edu	37	16	51174941	51174941	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	51174941	51174941	C	T	SNP	SALL1	NM_002968	human	genbank	57_37b	-1	reviewed	missense	c.1192	p.A398T	0.999	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	
SEZ6L	23544	genome.wustl.edu	37	22	26771550	26771557	+	Frame_Shift_Del	DEL	CGGCAGCA	CGGCAGCA	-	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	CGGCAGCA	CGGCAGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	26771550	26771557	CGGCAGCA	-	DEL	SEZ6L	NM_021115	human	genbank	57_37b	+1	validated	frame_shift_del	c.2837_2844	p.A946fs	1.000:0.989:1.000:1.000:1.000:1.000:1.000:0.553	NULL	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB	(deletion:cds_exon[26771541,26771655])	no_errors	
SLC7A3	84889	genome.wustl.edu	37	X	70149701	70149701	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	70149701	70149701	G	A	SNP	SLC7A3	NM_001048164	human	genbank	57_37b	-1	validated	silent	c.147	p.G49	0.540	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors	
SNORD18A	0	genome.wustl.edu	37	15	66795596	66795596	+	RNA	SNP	G	G	C	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	66795596	66795596	G	C	SNP	SNORD18A	NR_002441	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.873	-	-	-	no_errors	
SPAG16	79582	genome.wustl.edu	37	2	214161773	214161773	+	Silent	SNP	C	C	T	rs975956	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	214161773	214161773	C	T	SNP	SPAG16	ENST00000420497	human	ensembl	57_37b	+1	known	silent	c.211	p.L71	0.001	NULL	NULL	-		
SPAG17	200162	genome.wustl.edu	37	1	118624074	118624074	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	118624074	118624074	T	G	SNP	SPAG17	NM_206996	human	genbank	57_37b	-1	validated	missense	c.1954	p.M652L	0.000	NULL	NULL	-	no_errors	
TGFBI	7045	genome.wustl.edu	37	5	135396550	135396550	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	135396550	135396550	G	A	SNP	TGFBI	NM_000358	human	genbank	57_37b	+1	reviewed	missense	c.1831	p.E611K	0.997	superfamily_FAS1 domain,HMMPfam_Fasciclin,HMMSmart_SM00554	HMMPfam_EMI,superfamily_FAS1 domain,HMMPfam_Fasciclin,HMMSmart_SM00554	-	no_errors	
TGM1	7051	genome.wustl.edu	37	14	24724646	24724646	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24724646	24724646	G	A	SNP	TGM1	NM_000359	human	genbank	57_37b	-1	reviewed	silent	c.1569	p.I523	0.920	superfamily_SSF54001	superfamily_Ig_E-set,HMMPfam_Transglut_N,superfamily_SSF54001,HMMSmart_TGc,PatternScan_TRANSGLUTAMINASES,HMMPfam_Transglut_core,superfamily_Transglut_C,HMMPfam_Transglut_C	-	no_errors	
TIE1	7075	genome.wustl.edu	37	1	43783620	43783620	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	43783620	43783620	G	A	SNP	TIE1	NM_005424	human	genbank	57_37b	+1	provisional	silent	c.2799	p.R933	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_EGF,HMMPfam_Laminin_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196,HMMPfam_EGF_2,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7576855	7576855	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7576855	7576855	G	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	nonsense	c.991	p.Q331*	0.999	HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TXK	7294	genome.wustl.edu	37	4	48076033	48076033	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	48076033	48076033	C	T	SNP	TXK	NM_003328	human	genbank	57_37b	-1	validated	missense	c.1276	p.A426T	0.898	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
UBC	7316	genome.wustl.edu	37	12	125396685	125396686	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	125396685	125396686	-	G	INS	UBC	NM_021009	human	genbank	57_37b	-1	validated	frame_shift_ins	c.1633_1632	p.I544fs	1.000:1.000	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1	-	no_errors	
UMOD	7369	genome.wustl.edu	37	16	20357504	20357504	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	20357504	20357504	C	A	SNP	UMOD	NM_001008389	human	genbank	57_37b	-1	reviewed	missense	c.1126	p.D376Y	0.826	HMMPfam_Zona_pellucida,HMMSmart_SM00241	superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1	-	no_errors	
UNC13B	10497	genome.wustl.edu	37	9	35231138	35231138	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35231138	35231138	C	T	SNP	UNC13B	NM_006377	human	genbank	57_37b	+1	reviewed	missense	c.74	p.T25I	1.000	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD	-	no_errors	
USP53	54532	genome.wustl.edu	37	4	120181041	120181041	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	120181041	120181041	A	G	SNP	USP53	NM_019050	human	genbank	57_37b	+1	validated	silent	c.636	p.L212	0.897	superfamily_SSF54001,HMMPfam_UCH	superfamily_SSF54001,HMMPfam_UCH	-	no_errors	
XCR1	2829	genome.wustl.edu	37	3	46063416	46063416	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	46063416	46063416	C	G	SNP	XCR1	NM_001024644	human	genbank	57_37b	-1	reviewed	missense	c.24	p.E8D	0.000	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
ZC3H3	23144	genome.wustl.edu	37	8	144620871	144620871	+	Silent	SNP	A	G	G	rs3750209	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144620871	144620871	A	G	SNP	ZC3H3	NM_015117	human	genbank	57_37b	-1	validated	silent	c.666	p.S222	0.000	NULL	superfamily_CCCH zinc finger,HMMPfam_zf-CCCH,HMMSmart_SM00356	-		
ZSCAN21	7589	genome.wustl.edu	37	7	99662245	99662245	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D1-01	TCGA-A2-A0D1-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99662245	99662245	C	T	SNP	ZSCAN21	ENST00000456748	human	ensembl	57_37b	+1	known	nonsense	c.1324	p.Q442*	0.000	NULL	HMMPfam_SCAN,HMMSmart_SM00431	-	no_errors	
