Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADCY1	107	genome.wustl.edu	37	7	45717647	45717647	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	45717647	45717647	C	T	SNP	ADCY1	NM_021116	human	genbank	57_37b	+1	reviewed	silent	c.1785	p.V595	0.000	NULL	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors	
AP1G1	164	genome.wustl.edu	37	16	71792720	71792720	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	71792720	71792720	G	A	SNP	AP1G1	NM_001030007	human	genbank	57_37b	-1	reviewed	missense	c.1088	p.S363L	1.000	superfamily_ARM repeat,HMMPfam_Adaptin_N	superfamily_ARM repeat,HMMPfam_Adaptin_N,superfamily_Clathrin adaptor appendage domain,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809	-	no_errors	
ARHGEF6	9459	genome.wustl.edu	37	X	135757194	135757194	+	Silent	SNP	G	G	A	rs12008084	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	135757194	135757194	G	A	SNP	ARHGEF6	NM_004840	human	genbank	57_37b	-1	reviewed	silent	c.2007	p.S669	0.044	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-		
C10orf46	143384	genome.wustl.edu	37	10	120450820	120450820	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	120450820	120450820	C	T	SNP	C10orf46	NM_153810	human	genbank	57_37b	-1	validated	missense	c.982	p.D328N	1.000	NULL	superfamily_Cullin repeat,HMMPfam_Cullin	-	no_errors	
C21orf63	59271	genome.wustl.edu	37	21	33873789	33873789	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	33873789	33873789	G	C	SNP	C21orf63	NM_058187	human	genbank	57_37b	+1	validated	missense	c.843	p.Q281H	1.000	NULL	HMMPfam_Gal_Lectin	-	no_errors	
C3orf52	79669	genome.wustl.edu	37	3	111821786	111821786	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	111821786	111821786	G	A	SNP	C3orf52	NM_024616	human	genbank	57_37b	+1	validated	missense	c.370	p.E124K	0.512	NULL	NULL	-	no_errors	
CASP8	841	genome.wustl.edu	37	2	202137448	202137448	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	202137448	202137448	A	C	SNP	CASP8	NM_001080125	human	genbank	57_37b	+1	reviewed	missense	c.676	p.I226L	0.000	HMMSmart_SM00031,HMMPfam_DED	superfamily_DEATH domain,HMMSmart_SM00031,HMMPfam_DED,superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS	-	no_errors	
CCNG2	901	genome.wustl.edu	37	4	78080581	78080581	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	78080581	78080581	C	T	SNP	CCNG2	NM_004354	human	genbank	57_37b	+1	reviewed	missense	c.200	p.A67V	1.000	superfamily_Cyclin-like,HMMSmart_SM00385	superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_Cyclin_N	-	no_errors	
CELA3B	23436	genome.wustl.edu	37	1	22307568	22307568	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	22307568	22307568	G	A	SNP	CELA3B	NM_007352	human	genbank	57_37b	+1	reviewed	missense	c.265	p.D89N	0.741	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
CLASP1	23332	genome.wustl.edu	37	2	122161955	122161955	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	122161955	122161955	G	A	SNP	CLASP1	NM_015282	human	genbank	57_37b	-1	validated	missense	c.2725	p.H909Y	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
CLEC16A	23274	genome.wustl.edu	37	16	11137916	11137916	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	11137916	11137916	G	A	SNP	CLEC16A	NM_015226	human	genbank	57_37b	+1	validated	missense	c.1802	p.R601Q	0.951	NULL	HMMPfam_FPL,PatternScan_C_TYPE_LECTIN_1	-	no_errors	
CLEC6A	93978	genome.wustl.edu	37	12	8618227	8618227	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	8618227	8618227	T	C	SNP	CLEC6A	NM_001007033	human	genbank	57_37b	+1	provisional	splice_site	c.369+2	e4+2	0.946	-	-	-	no_errors	
CRX	1406	genome.wustl.edu	37	19	48343000	48343000	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	48343000	48343000	G	A	SNP	CRX	NM_000554	human	genbank	57_37b	+1	reviewed	missense	c.676	p.V226M	1.000	NULL	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
DCLRE1C	64421	genome.wustl.edu	37	10	14951002	14951002	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	14951002	14951002	C	G	SNP	DCLRE1C	NM_001033855	human	genbank	57_37b	-1	reviewed	missense	c.1484	p.R495T	0.140	NULL	superfamily_Metallo-hydrolase/oxidoreductase,HMMPfam_DRMBL	-	no_errors	
DGKG	1608	genome.wustl.edu	37	3	185986615	185986615	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	185986615	185986615	C	T	SNP	DGKG	NM_001346	human	genbank	57_37b	-1	reviewed	missense	c.1091	p.R364Q	1.000	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1	superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045	-	no_errors	
ENSG00000214394	0	genome.wustl.edu	37	15	100331800	100331800	+	Missense_Mutation	SNP	G	G	A	rs2004045	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	100331800	100331800	G	A	SNP	ENSG00000214394	ENST00000398270	human	ensembl	57_37b	+1	known	missense	c.53	p.R18Q	0.078	NULL	NULL	-		
ENSG00000247357	0	genome.wustl.edu	37	2	128645313	128645314	+	RNA	INS	-	-	TTT	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	128645313	128645314	-	TTT	INS	ENSG00000247357	ENST00000501946	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	
ESAM	90952	genome.wustl.edu	37	11	124626494	124626494	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	124626494	124626494	C	T	SNP	ESAM	NM_138961	human	genbank	57_37b	-1	validated	missense	c.394	p.D132N	0.006	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMSmart_IGc2,HMMPfam_I-set	-	no_errors	
FARP2	9855	genome.wustl.edu	37	2	242396201	242396201	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	242396201	242396201	G	A	SNP	FARP2	NM_014808	human	genbank	57_37b	+1	provisional	missense	c.1451	p.R484Q	0.000	NULL	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
FCGBP	8857	genome.wustl.edu	37	19	40368696	40368696	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40368696	40368696	C	T	SNP	FCGBP	NM_003890	human	genbank	57_37b	-1	validated	missense	c.12652	p.G4218S	1.000	HMMSmart_VWD,HMMPfam_VWD	HMMSmart_FOLN,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL,HMMPfam_TIL_assoc,HMMSmart_VWC	-	no_errors	
FLRT1	23769	genome.wustl.edu	37	11	63884963	63884963	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	63884963	63884963	C	T	SNP	FLRT1	NM_013280	human	genbank	57_37b	+1	reviewed	silent	c.1224	p.S408	0.053	NULL	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00364,HMMSmart_SM00082,HMMPfam_fn3	-	no_errors	
GIMAP7	168537	genome.wustl.edu	37	7	150217906	150217906	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150217906	150217906	A	G	SNP	GIMAP7	NM_153236	human	genbank	57_37b	+1	reviewed	missense	c.844	p.K282E	0.000	NULL	superfamily_SSF52540,HMMPfam_AIG1	-	no_errors	
GLG1	2734	genome.wustl.edu	37	16	74485722	74485722	+	RNA	SNP	G	G	A	rs3851730	byCluster;byFrequency;by1000genomes	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	74485722	74485722	G	A	SNP	GLG1	NR_027264	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.001	-	-	-		
GRLF1	2909	genome.wustl.edu	37	19	47424427	47424427	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	47424427	47424427	G	A	SNP	GRLF1	NM_004491	human	genbank	57_37b	+1	reviewed	missense	c.2495	p.R832Q	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00441,HMMPfam_FF,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
HABP4	22927	genome.wustl.edu	37	9	99228042	99228042	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	99228042	99228042	G	A	SNP	HABP4	NM_014282	human	genbank	57_37b	+1	validated	missense	c.725	p.G242E	0.963	HMMPfam_HABP4_PAI-RBP1	HMMPfam_HABP4_PAI-RBP1	-	no_errors	
HOXC4	3221	genome.wustl.edu	37	12	54448689	54448689	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	54448689	54448689	G	C	SNP	HOXC4	NM_014620	human	genbank	57_37b	+1	reviewed	silent	c.495	p.R165	1.000	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	PatternScan_ANTENNAPEDIA,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
HSPA8	3312	genome.wustl.edu	37	11	122930605	122930605	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	122930605	122930605	A	C	SNP	HSPA8	NM_006597	human	genbank	57_37b	-1	reviewed	missense	c.696	p.D232E	0.997	HMMPfam_HSP70,superfamily_Actin-like ATPase domain	superfamily_Actin-like ATPase domain,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain	-	no_errors	
HYLS1	219844	genome.wustl.edu	37	11	125769927	125769927	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	125769927	125769927	G	A	SNP	HYLS1	NM_001134793	human	genbank	57_37b	+1	reviewed	missense	c.664	p.D222N	1.000	NULL	NULL	-	no_errors	
KCNAB2	8514	genome.wustl.edu	37	1	6147566	6147566	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	6147566	6147566	C	T	SNP	KCNAB2	NM_003636	human	genbank	57_37b	+1	reviewed	silent	c.366	p.G122	0.872	superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red	superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red	-	no_errors	
LOC283685	0	genome.wustl.edu	37	15	23686687	23686687	+	Missense_Mutation	SNP	T	G	G	rs113964342	byCluster;by1000genomes	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	23686687	23686687	T	G	SNP	LOC283685	XM_002343322	human	genbank	57_37b	-1	model	missense	c.821	p.Q274P	0.024	NULL	NULL	-		
LOC400406	400406	genome.wustl.edu	37	15	78276892	78276892	+	RNA	SNP	G	G	A	rs112083962	byCluster;by1000genomes	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78276892	78276892	G	A	SNP	LOC400406	XR_042358	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.985	-	-	-		
LRPPRC	10128	genome.wustl.edu	37	2	44174410	44174410	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	44174410	44174410	G	A	SNP	LRPPRC	NM_133259	human	genbank	57_37b	-1	reviewed	missense	c.2065	p.L689F	0.948	NULL	superfamily_SSF48452,HMMPfam_PPR	-	no_errors	
MYO10	4651	genome.wustl.edu	37	5	16666900	16666900	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	16666900	16666900	C	T	SNP	MYO10	NM_012334	human	genbank	57_37b	-1	validated	silent	c.6078	p.V2026	1.000	NULL	PatternScan_FERM_1,PatternScan_FERM_2,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_MyTH4,HMMPfam_MyTH4,HMMSmart_B41,HMMPfam_RA,superfamily_FERM_3-hlx,HMMPfam_FERM_M	-	no_errors	
NAP1L3	4675	genome.wustl.edu	37	X	92927934	92927934	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	92927934	92927934	G	A	SNP	NAP1L3	NM_004538	human	genbank	57_37b	-1	reviewed	silent	c.370	p.L124	0.000	HMMPfam_NAP	HMMPfam_NAP	-	no_errors	
NCOR1	9611	genome.wustl.edu	37	17	16024444	16024444	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	16024444	16024444	C	A	SNP	NCOR1	NM_006311	human	genbank	57_37b	-1	reviewed	nonsense	c.1774	p.E592*	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-	no_errors	
NEB	4703	genome.wustl.edu	37	2	152394411	152394411	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	152394411	152394411	C	T	SNP	NEB	NM_004543	human	genbank	57_37b	-1	reviewed	missense	c.15974	p.R5325Q	1.000	HMMSmart_SM00227,HMMPfam_Nebulin	HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
OR2L13	284521	genome.wustl.edu	37	1	248263384	248263384	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248263384	248263384	C	G	SNP	OR2L13	NM_175911	human	genbank	57_37b	+1	provisional	missense	c.707	p.A236G	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR6A2	8590	genome.wustl.edu	37	11	6816119	6816119	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6816119	6816119	T	C	SNP	OR6A2	NM_003696	human	genbank	57_37b	-1	provisional	missense	c.821	p.D274G	0.996	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PCDHGA1	56114	genome.wustl.edu	37	5	140711927	140711927	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140711927	140711927	C	T	SNP	PCDHGA1	NM_018912	human	genbank	57_37b	+1	reviewed	missense	c.1676	p.A559V	0.077	superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PCDHGB5	56101	genome.wustl.edu	37	5	140778347	140778347	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140778347	140778347	G	A	SNP	PCDHGB5	NM_018925	human	genbank	57_37b	+1	reviewed	missense	c.653	p.G218E	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PCP2	126006	genome.wustl.edu	37	19	7696695	7696695	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	7696695	7696695	C	T	SNP	PCP2	NM_174895	human	genbank	57_37b	-1	provisional	splice_site	c.292-1	e4-1	0.999	-	-	-	no_errors	
PCSK9	255738	genome.wustl.edu	37	1	55505552	55505553	+	In_Frame_Ins	INS	-	-	CTG	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	55505552	55505553	-	CTG	INS	PCSK9	NM_174936	human	genbank	57_37b	+1	reviewed	in_frame_ins	c.42_43	p.18in_frame_insL	0.042:0.086	NULL	superfamily_Protease propeptides/inhibitors,HMMPfam_Inhibitor_I9,superfamily_Subtilisin-like,HMMPfam_Peptidase_S8	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178928219	178928220	+	In_Frame_Ins	INS	-	-	ATA	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178928219	178928220	-	ATA	INS	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	in_frame_ins	c.1405_1406	p.E469in_frame_insDK	1.000:1.000	superfamily_C2_CaLB,HMMPfam_PI3K_C2	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
RSF1	51773	genome.wustl.edu	37	11	77412285	77412285	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	77412285	77412285	T	G	SNP	RSF1	NM_016578	human	genbank	57_37b	-1	validated	missense	c.1989	p.K663N	0.002	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors	
SF3B1	23451	genome.wustl.edu	37	2	198266834	198266834	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	198266834	198266834	T	C	SNP	SF3B1	NM_012433	human	genbank	57_37b	-1	reviewed	missense	c.2098	p.K700E	1.000	superfamily_ARM repeat,HMMPfam_HEAT	HMMPfam_SF3b1,superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
SPG11	80208	genome.wustl.edu	37	15	44864968	44864968	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	44864968	44864968	G	C	SNP	SPG11	NM_025137	human	genbank	57_37b	-1	reviewed	missense	c.6256	p.L2086V	1.000	NULL	PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors	
TESK2	10420	genome.wustl.edu	37	1	45923438	45923438	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	45923438	45923438	T	C	SNP	TESK2	NM_007170	human	genbank	57_37b	-1	reviewed	missense	c.20	p.N7S	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
TGIF2	60436	genome.wustl.edu	37	20	35219587	35219587	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	35219587	35219587	C	T	SNP	TGIF2	NM_021809	human	genbank	57_37b	+1	reviewed	missense	c.467	p.P156L	0.973	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-	no_errors	
TMCC3	57458	genome.wustl.edu	37	12	94965266	94965266	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	94965266	94965266	C	G	SNP	TMCC3	NM_020698	human	genbank	57_37b	-1	validated	missense	c.1379	p.C460S	1.000	HMMPfam_Tmemb_cc2	HMMPfam_Tmemb_cc2	-	no_errors	
TRAK1	22906	genome.wustl.edu	37	3	42229603	42229603	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	42229603	42229603	G	T	SNP	TRAK1	NM_001042646	human	genbank	57_37b	+1	validated	nonsense	c.547	p.E183*	1.000	HMMPfam_HAP1_N	HMMPfam_HAP1_N,PatternScan_HEMOPEXIN	-	no_errors	
UBA2	10054	genome.wustl.edu	37	19	34960012	34960012	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	34960012	34960012	C	T	SNP	UBA2	NM_005499	human	genbank	57_37b	+1	validated	silent	c.1809	p.V603	0.011	NULL	superfamily_MoeB,HMMPfam_ThiF,HMMPfam_UBA_e1_thiolCys,PatternScan_UBIQUITIN_ACTIVAT_2,HMMPfam_UBACT,PatternScan_UBIQUITIN_ACTIVAT_1	-	no_errors	
UBE3B	89910	genome.wustl.edu	37	12	109959017	109959017	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	109959017	109959017	T	C	SNP	UBE3B	NM_130466	human	genbank	57_37b	+1	reviewed	missense	c.2141	p.F714S	1.000	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119	HMMSmart_SM00015,HMMPfam_IQ,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors	
UPF3A	65110	genome.wustl.edu	37	13	115047305	115047305	+	Missense_Mutation	SNP	G	A	A	rs3752105	byCluster;by1000genomes	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	115047305	115047305	G	A	SNP	UPF3A	NM_023011	human	genbank	57_37b	+1	reviewed	missense	c.191	p.R64K	0.212	HMMPfam_Smg4_UPF3	HMMPfam_Smg4_UPF3,superfamily_RNA-binding domain RBD	-		
USH2A	7399	genome.wustl.edu	37	1	215802376	215802376	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	215802376	215802376	C	T	SNP	USH2A	NM_206933	human	genbank	57_37b	-1	reviewed	missense	c.15299	p.G5100E	1.000	NULL	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors	
XDH	7498	genome.wustl.edu	37	2	31595149	31595149	+	Missense_Mutation	SNP	C	C	T	rs61731081	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	31595149	31595149	C	T	SNP	XDH	NM_000379	human	genbank	57_37b	-1	reviewed	missense	c.1801	p.E601K	0.397	superfamily_Aldxan_dh_hamm,HMMPfam_Ald_Xan_dh_C	superfamily_Ferredoxin,HMMPfam_Fer2,PatternScan_2FE2S_FER_1,HMMPfam_Fer2_2,superfamily_2Fe-2S_bind,superfamily_FAD-binding_2,HMMPfam_FAD_binding_5,superfamily_CO_deh_flav_C,HMMPfam_CO_deh_flav_C,superfamily_Aldxan_dh_hamm,HMMPfam_Ald_Xan_dh_C,superfamily_Ald_xan_DH_mo_bd,HMMPfam_Ald_Xan_dh_C2,PatternScan_MOLYBDOPTERIN_EUK	-		
ZBBX	79740	genome.wustl.edu	37	3	167034856	167034856	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	167034856	167034856	C	T	SNP	ZBBX	NM_024687	human	genbank	57_37b	-1	validated	silent	c.1131	p.L377	0.953	NULL	HMMPfam_zf-B_box	-	no_errors	
ZMYND8	23613	genome.wustl.edu	37	20	45867732	45867732	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	45867732	45867732	G	A	SNP	ZMYND8	NM_183047	human	genbank	57_37b	-1	reviewed	missense	c.2435	p.P812L	0.830	NULL	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,superfamily_SSF63748,HMMPfam_PWWP,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1	-	no_errors	
ZNF420	147923	genome.wustl.edu	37	19	37618814	37618814	+	Nonsense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	37618814	37618814	T	G	SNP	ZNF420	NM_144689	human	genbank	57_37b	+1	provisional	nonsense	c.921	p.Y307*	0.995	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF609	23060	genome.wustl.edu	37	15	64792134	64792134	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	64792134	64792134	C	T	SNP	ZNF609	NM_015042	human	genbank	57_37b	+1	provisional	silent	c.516	p.S172	0.987	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZSCAN5A	79149	genome.wustl.edu	37	19	56734011	56734011	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56734011	56734011	C	T	SNP	ZSCAN5A	NM_024303	human	genbank	57_37b	-1	provisional	missense	c.688	p.E230K	0.257	NULL	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZSCAN5A	79149	genome.wustl.edu	37	19	56735006	56735006	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EV-01	TCGA-A2-A0EV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56735006	56735006	C	G	SNP	ZSCAN5A	NM_024303	human	genbank	57_37b	-1	provisional	missense	c.582	p.R194S	0.000	NULL	HMMPfam_SCAN,HMMSmart_SCAN,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors	
