Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACACA	31	genome.wustl.edu	37	17	35468534	35468534	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	35468534	35468534	C	T	SNP	ACACA	NM_198834	human	genbank	57_37b	-1	reviewed	missense	c.6497	p.R2166H	1.000	superfamily_SSF52096,HMMPfam_Carboxyl_trans	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like,superfamily_SSF56059,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_Rudmnt_hyb_motif,HMMPfam_Biotin_carb_C,superfamily_Hybrid_motif,HMMPfam_Biotin_lipoyl,PatternScan_BIOTIN,HMMPfam_ACC_central,superfamily_SSF52096,HMMPfam_Carboxyl_trans	-	no_errors	
ACLY	47	genome.wustl.edu	37	17	40025782	40025782	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40025782	40025782	G	A	SNP	ACLY	NM_001096	human	genbank	57_37b	-1	reviewed	missense	c.2996	p.P999L	1.000	superfamily_Citrate_synthase_core	superfamily_SSF56059,superfamily_CoA_ligase,PatternScan_SUCCINYL_COA_LIG_3,superfamily_NAD(P)-bd,HMMPfam_CoA_binding,superfamily_Citrate_synthase_core,HMMPfam_Ligase_CoA,PatternScan_SUCCINYL_COA_LIG_1,PatternScan_SUCCINYL_COA_LIG_2	-	no_errors	
ACTG1	71	genome.wustl.edu	37	17	79477829	79477830	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79477829	79477830	CC	-	DEL	ACTG1	NM_001614	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1015_1014	p.W340fs	0.997:0.001	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	(deletion:cds_exon[79477716,79477859])	no_errors	
ADAMTS18	170692	genome.wustl.edu	37	16	77326976	77326976	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	77326976	77326976	G	A	SNP	ADAMTS18	NM_199355	human	genbank	57_37b	-1	reviewed	silent	c.3186	p.S1062	0.996	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors	
ALOXE3	59344	genome.wustl.edu	37	17	8020092	8020092	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	8020092	8020092	A	C	SNP	ALOXE3	NM_021628	human	genbank	57_37b	-1	reviewed	splice_site	c.352+2	e2+2	1.000	-	-	-	no_errors	
AZI1	22994	genome.wustl.edu	37	17	79173241	79173241	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79173241	79173241	G	A	SNP	AZI1	NM_014984	human	genbank	57_37b	-1	validated	nonsense	c.1132	p.Q378*	0.007	NULL	NULL	-	no_errors	
BRCA2	675	genome.wustl.edu	37	13	32972574	32972574	+	Nonsense_Mutation	SNP	C	C	G	rs4987049	byCluster	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	32972574	32972574	C	G	SNP	BRCA2	NM_000059	human	genbank	57_37b	+1	reviewed	nonsense	c.9924	p.Y3308*	0.000	NULL	HMMPfam_BRCA2,superfamily_BRCA2_helical,HMMPfam_BRCA-2_helical,superfamily_Nucleic_acid_OB,HMMPfam_BRCA-2_OB1,HMMPfam_Tower,superfamily_SSF81878,HMMPfam_BRCA-2_OB3	-		
C19orf53	28974	genome.wustl.edu	37	19	13888918	13888918	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	13888918	13888918	C	G	SNP	C19orf53	NM_014047	human	genbank	57_37b	+1	validated	missense	c.206	p.A69G	1.000	HMMPfam_DUF2462	HMMPfam_DUF2462	-	no_errors	
C1orf14	81626	genome.wustl.edu	37	1	182922067	182922067	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	182922067	182922067	G	T	SNP	C1orf14	NM_030933	human	genbank	57_37b	-1	validated	missense	c.202	p.L68M	1.000	NULL	HMMSmart_CASH,superfamily_Pectin_lyas_like,HMMSmart_PbH1	-	no_errors	
CACNA1A	773	genome.wustl.edu	37	19	13341008	13341008	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	13341008	13341008	C	T	SNP	CACNA1A	NM_001127222	human	genbank	57_37b	-1	reviewed	missense	c.5416	p.V1806I	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors	
EFCAB4A	283229	genome.wustl.edu	37	11	830601	830602	+	Frame_Shift_Ins	INS	-	-	GGTC	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	830601	830602	-	GGTC	INS	EFCAB4A	ENST00000327417	human	ensembl	57_37b	+1	known	frame_shift_ins	c.678_679	p.P227fs	0.001:0.000	NULL	PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8115874	8115875	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8115874	8115875	-	G	INS	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1223_1224	p.P409fs	0.903:0.359	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors	
GCC1	79571	genome.wustl.edu	37	7	127222606	127222606	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	127222606	127222606	G	A	SNP	GCC1	NM_024523	human	genbank	57_37b	-1	reviewed	missense	c.1790	p.T597I	0.029	NULL	HMMPfam_GRIP,HMMSmart_SM00755	-	no_errors	
GIMAP7	168537	genome.wustl.edu	37	7	150217162	150217162	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150217162	150217162	T	-	DEL	GIMAP7	NM_153236	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.100	p.F34fs	0.796	superfamily_SSF52540,HMMPfam_AIG1	superfamily_SSF52540,HMMPfam_AIG1	(deletion:cds_exon[150217063,150217965])	no_errors	
HAUS5	23354	genome.wustl.edu	37	19	36109580	36109580	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36109580	36109580	G	A	SNP	HAUS5	NM_015302	human	genbank	57_37b	+1	validated	missense	c.995	p.R332H	0.000	NULL	NULL	-	no_errors	
IFT122	55764	genome.wustl.edu	37	3	129207141	129207141	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	129207141	129207141	G	-	DEL	IFT122	NM_052985	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2046	p.E683fs	0.993	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	(deletion:cds_exon[129207100,129207240])	no_errors	
KIAA1147	57189	genome.wustl.edu	37	7	141365068	141365076	+	In_Frame_Del	DEL	TGCCCCCGA	TGCCCCCGA	-	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	TGCCCCCGA	TGCCCCCGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	141365068	141365076	TGCCCCCGA	-	DEL	KIAA1147	NM_001080392	human	genbank	57_37b	-1	provisional	in_frame_del	c.871_863	p.IGG288in_frame_del	0.996:0.992:1.000:1.000:0.997:1.000:0.999:0.454:0.991	HMMPfam_DUF2347	HMMPfam_DUF2347	(deletion:cds_exon[141364987,141365118])	no_errors	
KIAA1244	57221	genome.wustl.edu	37	6	138599688	138599688	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	138599688	138599688	C	T	SNP	KIAA1244	NM_020340	human	genbank	57_37b	+1	validated	silent	c.2229	p.L743	0.943	HMMSmart_Sec7	HMMSmart_Sec7,HMMPfam_DUF1981	-	no_errors	
MOCOS	55034	genome.wustl.edu	37	18	33793393	33793393	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	33793393	33793393	C	T	SNP	MOCOS	NM_017947	human	genbank	57_37b	+1	validated	missense	c.1283	p.A428V	1.000	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_5	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_5,superfamily_PK beta-barrel domain-like,HMMPfam_MOSC_N,HMMPfam_MOSC	-	no_errors	
MOXD1	26002	genome.wustl.edu	37	6	132643998	132643998	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	132643998	132643998	G	A	SNP	MOXD1	NM_015529	human	genbank	57_37b	-1	validated	silent	c.1125	p.A375	0.992	HMMPfam_Cu2_monoox_C,superfamily_PHM/PNGase F	HMMSmart_SM00664,HMMPfam_DOMON,superfamily_PHM/PNGase F,HMMPfam_Cu2_monooxygen,HMMPfam_Cu2_monoox_C	-	no_errors	
MREG	55686	genome.wustl.edu	37	2	216878008	216878008	+	Missense_Mutation	SNP	C	C	G	rs1864253	byCluster;byFrequency;by1000genomes	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	216878008	216878008	C	G	SNP	MREG	NM_018000	human	genbank	57_37b	-1	validated	missense	c.43	p.G15R	0.503	NULL	NULL	-		
NCAN	1463	genome.wustl.edu	37	19	19338574	19338574	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19338574	19338574	G	A	SNP	NCAN	NM_004386	human	genbank	57_37b	+1	validated	silent	c.2145	p.Q715	0.000	NULL	superfamily_SSF48726,HMMSmart_IG,superfamily_C-type_lectin_fold,HMMSmart_LINK,HMMPfam_Xlink,PatternScan_LINK_1,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_CLECT,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	-	no_errors	
PNMT	5409	genome.wustl.edu	37	17	37825994	37825994	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37825994	37825994	C	G	SNP	PNMT	NM_002686	human	genbank	57_37b	+1	reviewed	silent	c.315	p.V105	1.000	HMMPfam_NNMT_PNMT_TEMT,superfamily_SSF53335	HMMPfam_NNMT_PNMT_TEMT,superfamily_SSF53335,PatternScan_NNMT_PNMT_TEMT	-	no_errors	
REG3A	5068	genome.wustl.edu	37	2	79384752	79384752	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	79384752	79384752	T	A	SNP	REG3A	NM_002580	human	genbank	57_37b	-1	reviewed	missense	c.406	p.N136Y	0.000	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors	
RGS12	6002	genome.wustl.edu	37	4	3318650	3318650	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	3318650	3318650	C	A	SNP	RGS12	NM_198229	human	genbank	57_37b	+1	reviewed	missense	c.753	p.S251R	0.002	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315,superfamily_Ubiquitin-like,HMMPfam_RBD,HMMSmart_SM00455,HMMPfam_GoLoco,HMMSmart_SM00390	-	no_errors	
SLC38A10	124565	genome.wustl.edu	37	17	79258654	79258665	+	In_Frame_Del	DEL	TCTCCACCAGCA	TCTCCACCAGCA	-	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	TCTCCACCAGCA	TCTCCACCAGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79258654	79258665	TCTCCACCAGCA	-	DEL	SLC38A10	NM_001037984	human	genbank	57_37b	-1	validated	in_frame_del	c.259_248	p.MLVE83in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_Aa_trans	HMMPfam_Aa_trans	(deletion:cds_exon[79258650,79258695])	no_errors	
TAS2R5	54429	genome.wustl.edu	37	7	141490297	141490297	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	141490297	141490297	C	G	SNP	TAS2R5	NM_018980	human	genbank	57_37b	+1	reviewed	missense	c.136	p.L46V	0.007	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like	-	no_errors	
TMEM213	155006	genome.wustl.edu	37	7	138482852	138482864	+	Frame_Shift_Del	DEL	GCAGCGCCTCCCC	GCAGCGCCTCCCC	-	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	GCAGCGCCTCCCC	GCAGCGCCTCCCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	138482852	138482864	GCAGCGCCTCCCC	-	DEL	TMEM213	NM_001085429	human	genbank	57_37b	+1	validated	frame_shift_del	c.3_15	p.Q2fs	0.000:0.000:0.000:0.002:0.000:0.000:0.008:0.022:0.026:0.020:0.001:0.012:0.015	NULL	NULL	(deletion:cds_exon[138482850,138482931])	no_errors	
TRAPPC9	83696	genome.wustl.edu	37	8	141294029	141294029	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	141294029	141294029	A	C	SNP	TRAPPC9	NM_031466	human	genbank	57_37b	-1	reviewed	missense	c.2367	p.I789M	0.936	HMMPfam_Trs120	HMMPfam_Trs120	-	no_errors	
UBC	7316	genome.wustl.edu	37	12	125397063	125397063	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0SU-01	TCGA-A2-A0SU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	125397063	125397063	C	A	SNP	UBC	NM_021009	human	genbank	57_37b	-1	validated	missense	c.1255	p.D419Y	1.000	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1	-	no_errors	
