Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ARMCX2	9823	genome.wustl.edu	37	X	100911424	100911424	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	100911424	100911424	C	T	SNP	ARMCX2	NM_014782	human	genbank	57_37b	-1	reviewed	missense	c.1151	p.G384D	0.998	superfamily_ARM-type_fold,HMMPfam_DUF634	superfamily_ARM-type_fold,HMMPfam_DUF634	-	no_errors	
BAHCC1	57597	genome.wustl.edu	37	17	79419025	79419025	+	Missense_Mutation	SNP	G	G	A	rs35572189	byCluster;byFrequency;by1000genomes	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79419025	79419025	G	A	SNP	BAHCC1	ENST00000436173	human	ensembl	57_37b	+1	known	missense	c.4208	p.R1403Q	0.861	NULL	HMMPfam_BAH,HMMSmart_SM00439	-		
BAT2L2	0	genome.wustl.edu	37	1	171527109	171527109	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	171527109	171527109	C	G	SNP	BAT2L2	NM_015172	human	genbank	57_37b	+1	validated	nonsense	c.5852	p.S1951*	0.989	NULL	HMMPfam_BAT2_N	-	no_errors	
C12orf48	55010	genome.wustl.edu	37	12	102572481	102572481	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	102572481	102572481	G	C	SNP	C12orf48	NM_017915	human	genbank	57_37b	+1	predicted	missense	c.874	p.A292P	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
C21orf66	94104	genome.wustl.edu	37	21	34127560	34127560	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	34127560	34127560	C	T	SNP	C21orf66	NM_016631	human	genbank	57_37b	-1	reviewed	silent	c.1488	p.S496	1.000	HMMPfam_GCFC	HMMPfam_GCFC	-	no_errors	
C7orf71	285941	genome.wustl.edu	37	7	26686000	26686001	+	Frame_Shift_Ins	INS	-	-	AA	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	26686000	26686001	-	AA	INS	C7orf71	NM_001145531	human	genbank	57_37b	+1	predicted	frame_shift_ins	c.351_352	p.A118fs	0.769:0.680	NULL	NULL	-	no_errors	
CFHR4	10877	genome.wustl.edu	37	1	196884227	196884227	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	196884227	196884227	C	A	SNP	CFHR4	NM_006684	human	genbank	57_37b	+1	validated	missense	c.758	p.T253K	0.000	superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	-	no_errors	
CLIP4	79745	genome.wustl.edu	37	2	29366667	29366667	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	29366667	29366667	C	A	SNP	CLIP4	NM_024692	human	genbank	57_37b	+1	validated	silent	c.741	p.I247	1.000	superfamily_Ankyrin repeat	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors	
COL6A3	1293	genome.wustl.edu	37	2	238290029	238290029	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	238290029	238290029	C	A	SNP	COL6A3	NM_004369	human	genbank	57_37b	-1	reviewed	nonsense	c.1426	p.E476*	1.000	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors	
CROCCL1	84809	genome.wustl.edu	37	1	16955128	16955128	+	RNA	SNP	A	A	G	rs1762949	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16955128	16955128	A	G	SNP	CROCCL1	NR_026752	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.562	-	-	-		
DGKI	9162	genome.wustl.edu	37	7	137092668	137092668	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	137092668	137092668	G	A	SNP	DGKI	NM_004717	human	genbank	57_37b	-1	reviewed	missense	c.2897	p.A966V	1.000	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	PatternScan_ZF_DAG_PE_1,HMMSmart_C1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_DAGKc,HMMPfam_DAGK_acc,HMMSmart_DAGKa,superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	-	no_errors	
ELTD1	64123	genome.wustl.edu	37	1	79358816	79358816	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	79358816	79358816	A	G	SNP	ELTD1	NM_022159	human	genbank	57_37b	-1	validated	missense	c.1808	p.L603S	0.989	HMMPfam_7tm_2	HMMSmart_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,superfamily_SSF57196,PatternScan_ASX_HYDROXYL,PatternScan_EF_HAND_1,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
FAM9B	171483	genome.wustl.edu	37	X	8998340	8998340	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	8998340	8998340	G	A	SNP	FAM9B	NM_205849	human	genbank	57_37b	-1	validated	silent	c.243	p.N81	0.047	HMMPfam_Cor1	HMMPfam_Cor1	-	no_errors	
FAM9B	171483	genome.wustl.edu	37	X	9000382	9000382	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	9000382	9000382	C	A	SNP	FAM9B	NM_205849	human	genbank	57_37b	-1	validated	missense	c.149	p.G50V	0.023	NULL	HMMPfam_Cor1	-	no_errors	
GRIN3A	116443	genome.wustl.edu	37	9	104432629	104432629	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	104432629	104432629	C	A	SNP	GRIN3A	NM_133445	human	genbank	57_37b	-1	reviewed	missense	c.2065	p.A689S	1.000	superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan	superfamily_SSF53822,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMSmart_PBPe,HMMPfam_Lig_chan	-	no_errors	
HIRA	7290	genome.wustl.edu	37	22	19348811	19348811	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	19348811	19348811	T	C	SNP	HIRA	NM_003325	human	genbank	57_37b	-1	reviewed	silent	c.2034	p.A678	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_HIRA_B,HMMPfam_Hira	-	no_errors	
KCNF1	3754	genome.wustl.edu	37	2	11053020	11053020	+	Silent	SNP	A	A	G	rs3732104	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	11053020	11053020	A	G	SNP	KCNF1	NM_002236	human	genbank	57_37b	+1	reviewed	silent	c.468	p.A156	0.968	NULL	superfamily_POZ domain,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-		
KIAA0467	23334	genome.wustl.edu	37	1	43914050	43914050	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	43914050	43914050	G	A	SNP	KIAA0467	NM_015284	human	genbank	57_37b	+1	predicted	silent	c.7167	p.P2389	0.821	NULL	NULL	-	no_errors	
KIAA1045	23349	genome.wustl.edu	37	9	34976648	34976648	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	34976648	34976648	G	T	SNP	KIAA1045	NM_015297	human	genbank	57_37b	+1	validated	missense	c.760	p.A254S	1.000	NULL	PatternScan_ZF_PHD_1	-	no_errors	
KLHL30	377007	genome.wustl.edu	37	2	239049602	239049602	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	239049602	239049602	C	T	SNP	KLHL30	NM_198582	human	genbank	57_37b	+1	validated	silent	c.153	p.S51	1.000	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors	
LAMA5	3911	genome.wustl.edu	37	20	60887581	60887581	+	Missense_Mutation	SNP	G	G	A	rs944895	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60887581	60887581	G	A	SNP	LAMA5	NM_005560	human	genbank	57_37b	-1	reviewed	missense	c.9235	p.R3079W	0.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_TNFR_NGFR_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-		
LHFPL4	375323	genome.wustl.edu	37	3	9547779	9547779	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	9547779	9547779	G	T	SNP	LHFPL4	NM_198560	human	genbank	57_37b	-1	reviewed	nonsense	c.515	p.S172*	1.000	HMMPfam_L_HGMIC_fpl	HMMPfam_L_HGMIC_fpl	-	no_errors	
LOC100129518	0	genome.wustl.edu	37	6	160183182	160183182	+	RNA	SNP	G	G	C	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	160183182	160183182	G	C	SNP	LOC100129518	XR_079492	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.000	-	-	-	no_errors	
LOC100130803	0	genome.wustl.edu	37	5	29600826	29600826	+	Missense_Mutation	SNP	G	G	A	rs71623705	byCluster;by1000genomes	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	29600826	29600826	G	A	SNP	LOC100130803	XM_001722411	human	genbank	57_37b	+1	model	missense	c.113	p.R38H	0.987	superfamily_Ubiquitin-like	superfamily_Ubiquitin-like	-		
LOC100289073	0	genome.wustl.edu	37	17	61507791	61507791	+	Missense_Mutation	SNP	G	A	A	rs117255003	by1000genomes	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	61507791	61507791	G	A	SNP	LOC100289073	XM_002343576	human	genbank	57_37b	+1	model	missense	c.4	p.A2T	0.002	PatternScan_THIOL_PROTEASE_HIS	PatternScan_THIOL_PROTEASE_HIS	-		
LRFN3	79414	genome.wustl.edu	37	19	36430798	36430798	+	Silent	SNP	A	A	G	rs1057265	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36430798	36430798	A	G	SNP	LRFN3	NM_024509	human	genbank	57_37b	+1	provisional	silent	c.471	p.T157	0.355	superfamily_SSF52058,HMMPfam_LRR_1	HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3	-		
MLANA	2315	genome.wustl.edu	37	9	5892543	5892543	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	5892543	5892543	G	A	SNP	MLANA	NM_005511	human	genbank	57_37b	+1	validated	silent	c.69	p.T23	0.038	NULL	NULL	-	no_errors	
MUC16	94025	genome.wustl.edu	37	19	9091513	9091513	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9091513	9091513	G	T	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	missense	c.302	p.T101N	0.000	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors	
NBEAL2	23218	genome.wustl.edu	37	3	47043538	47043538	+	Missense_Mutation	SNP	C	C	T	rs2305634	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	47043538	47043538	C	T	SNP	NBEAL2	ENST00000416683	human	ensembl	57_37b	+1	known	missense	c.2774	p.P925L	0.000	NULL	superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-		
NETO1	81832	genome.wustl.edu	37	18	70417577	70417577	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	70417577	70417577	G	T	SNP	NETO1	NM_138966	human	genbank	57_37b	-1	reviewed	silent	c.1261	p.R421	1.000	NULL	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1	-	no_errors	
NRXN2	9379	genome.wustl.edu	37	11	64374729	64374729	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64374729	64374729	G	A	SNP	NRXN2	NM_015080	human	genbank	57_37b	-1	reviewed	missense	c.5078	p.P1693L	0.958	NULL	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00294	-	no_errors	
OBSCN	84033	genome.wustl.edu	37	1	228559994	228559994	+	Missense_Mutation	SNP	C	C	T	rs500049	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228559994	228559994	C	T	SNP	OBSCN	NM_001098623	human	genbank	57_37b	+1	reviewed	missense	c.21515	p.A7172V	0.578	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-		
ODZ1	10178	genome.wustl.edu	37	X	123615786	123615786	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	123615786	123615786	C	A	SNP	ODZ1	NM_014253	human	genbank	57_37b	-1	reviewed	missense	c.3724	p.A1242S	1.000	superfamily_SSF101898	HMMPfam_Ten_N,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_SSF57196,superfamily_SSF101898,HMMPfam_NHL,superfamily_N2O_reductase_N,HMMPfam_RHS_repeat	-	no_errors	
OR8H2	390151	genome.wustl.edu	37	11	55873220	55873220	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55873220	55873220	G	T	SNP	OR8H2	NM_001005200	human	genbank	57_37b	+1	provisional	missense	c.702	p.K234N	0.031	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
PCDHB6	56130	genome.wustl.edu	37	5	140531761	140531761	+	Silent	SNP	T	G	G	rs17844442	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140531761	140531761	T	G	SNP	PCDHB6	NM_018939	human	genbank	57_37b	+1	reviewed	silent	c.1923	p.L641	0.997	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-		
PGAP1	80055	genome.wustl.edu	37	2	197709278	197709278	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	197709278	197709278	G	A	SNP	PGAP1	NM_024989	human	genbank	57_37b	-1	validated	silent	c.2307	p.S769	0.996	NULL	HMMPfam_PGAP1,superfamily_alpha/beta-Hydrolases	-	no_errors	
PHRF1	57661	genome.wustl.edu	37	11	607853	607853	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	607853	607853	G	C	SNP	PHRF1	NM_020901	human	genbank	57_37b	+1	validated	silent	c.2394	p.T798	0.061	NULL	superfamily_SSF57850,HMMPfam_zf-C3HC4,HMMSmart_RING,PatternScan_ZF_RING_1,PatternScan_ZF_PHD_1,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD	-	no_errors	
PHRF1	57661	genome.wustl.edu	37	11	609068	609068	+	Silent	SNP	G	G	A	rs7928902	byCluster;by1000genomes	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	609068	609068	G	A	SNP	PHRF1	NM_020901	human	genbank	57_37b	+1	validated	silent	c.3609	p.A1203	0.000	NULL	HMMSmart_RING,HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SSF57850	-		
PLCD3	113026	genome.wustl.edu	37	17	43198282	43198282	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	43198282	43198282	C	T	SNP	PLCD3	ENST00000322765	human	ensembl	57_37b	-1	known	missense	c.541	p.E181K	1.000	NULL	superfamily_PH domain-like,HMMSmart_SM00233,superfamily_EF-hand,PatternScan_EF_HAND_1,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors	
POU4F3	5459	genome.wustl.edu	37	5	145718682	145718682	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	145718682	145718682	G	C	SNP	POU4F3	NM_002700	human	genbank	57_37b	+1	reviewed	missense	c.7	p.A3P	0.999	NULL	HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
PPM1E	22843	genome.wustl.edu	37	17	57057757	57057757	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	57057757	57057757	C	T	SNP	PPM1E	NM_014906	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.R545C	1.000	NULL	superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C,PatternScan_PP2C	-	no_errors	
PRIC285	85441	genome.wustl.edu	37	20	62200860	62200860	+	Silent	SNP	A	A	G	rs1757752	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62200860	62200860	A	G	SNP	PRIC285	NM_001037335	human	genbank	57_37b	-1	reviewed	silent	c.729	p.A243	0.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_RNB,PatternScan_RIBONUCLEASE_II	-		
PTBP1	5725	genome.wustl.edu	37	19	804642	804642	+	Silent	SNP	C	T	T	rs3170451	byCluster;byFrequency;by1000genomes	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	804642	804642	C	T	SNP	PTBP1	NM_002819	human	genbank	57_37b	+1	reviewed	silent	c.546	p.P182	0.012	superfamily_SSF54928	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-		
PTGER3	5733	genome.wustl.edu	37	1	71512643	71512643	+	Silent	SNP	C	C	A	rs5671	byCluster;byFrequency;by1000genomes	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	71512643	71512643	C	A	SNP	PTGER3	NM_198718	human	genbank	57_37b	-1	reviewed	silent	c.618	p.T206	0.468	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1	-		
RPAP1	26015	genome.wustl.edu	37	15	41813279	41813279	+	Silent	SNP	C	C	T	rs3743031	byCluster;byFrequency;by1000genomes	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	41813279	41813279	C	T	SNP	RPAP1	NM_015540	human	genbank	57_37b	-1	reviewed	silent	c.3105	p.R1035	0.037	NULL	HMMPfam_RPAP1_N,HMMPfam_RPAP1_C	-		
SCNN1A	6337	genome.wustl.edu	37	12	6458148	6458148	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6458148	6458148	C	T	SNP	SCNN1A	NM_001038	human	genbank	57_37b	-1	reviewed	silent	c.1521	p.S507	0.005	HMMPfam_ASC	HMMPfam_ASC,PatternScan_ASC	-	no_errors	
SH3TC1	54436	genome.wustl.edu	37	4	8230235	8230235	+	Silent	SNP	T	T	C	rs1281151	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	8230235	8230235	T	C	SNP	SH3TC1	NM_018986	human	genbank	57_37b	+1	validated	silent	c.2814	p.L938	0.000	superfamily_TPR-like	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	-		
SIM1	6492	genome.wustl.edu	37	6	100841453	100841453	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	100841453	100841453	C	T	SNP	SIM1	NM_005068	human	genbank	57_37b	-1	reviewed	missense	c.1480	p.A494T	0.950	HMMPfam_SIM_C	HMMPfam_HLH,HMMSmart_HLH,HMMPfam_PAS,HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC,HMMPfam_SIM_C	-	no_errors	
SIRPB1	10326	genome.wustl.edu	37	20	1559200	1559200	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	1559200	1559200	C	A	SNP	SIRPB1	NM_006065	human	genbank	57_37b	-1	reviewed	missense	c.217	p.A73S	0.003	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_C1-set,HMMSmart_SM00407	-	no_errors	
SP9	0	genome.wustl.edu	37	2	175202011	175202011	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	175202011	175202011	C	T	SNP	SP9	NM_001145250	human	genbank	57_37b	+1	provisional	missense	c.1198	p.R400C	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	
TBC1D10C	374403	genome.wustl.edu	37	11	67171736	67171736	+	Silent	SNP	C	T	T	rs2514256	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67171736	67171736	C	T	SNP	TBC1D10C	NM_198517	human	genbank	57_37b	+1	provisional	silent	c.63	p.S21	0.058	NULL	superfamily_RabGAP_TBC,HMMSmart_TBC,HMMPfam_TBC	-		
TP53	7157	genome.wustl.edu	37	17	7577051	7577079	+	Frame_Shift_Del	DEL	TGAGGCTCCCCTTTCTTGCGGAGATTCTC	TGAGGCTCCCCTTTCTTGCGGAGATTCTC	-	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	TGAGGCTCCCCTTTCTTGCGGAGATTCTC	TGAGGCTCCCCTTTCTTGCGGAGATTCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577051	7577079	TGAGGCTCCCCTTTCTTGCGGAGATTCTC	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.887_859	p.E287fs	0.000:0.000:0.000:0.000:0.001:0.001:0.008:0.015:0.006:0.008:0.324:0.411:0.904:0.987:0.998:1.000:1.000:1.000:0.995:1.000:0.998:0.995:0.983:0.990:0.994:0.991:0.910:1.000:1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7577019,7577155])	no_errors	
USP9X	8239	genome.wustl.edu	37	X	41075185	41075185	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	41075185	41075185	T	C	SNP	USP9X	NM_001039590	human	genbank	57_37b	+1	reviewed	silent	c.5365	p.L1789	1.000	superfamily_Cysteine proteinases,HMMPfam_UCH	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
WDR81	124997	genome.wustl.edu	37	17	1637074	1637074	+	Silent	SNP	A	G	G	rs3809871	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1637074	1637074	A	G	SNP	WDR81	ENST00000409644	human	ensembl	57_37b	+1	known	silent	c.4743	p.P1581	0.000	superfamily_WD40 repeat-like	superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,PatternScan_FBPASE,HMMSmart_SM00320,HMMPfam_WD40	-		
YEATS2	55689	genome.wustl.edu	37	3	183442226	183442226	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	183442226	183442226	G	C	SNP	YEATS2	NM_018023	human	genbank	57_37b	+1	validated	missense	c.557	p.G186A	0.807	NULL	HMMPfam_YEATS	-	no_errors	
ZFYVE9	9372	genome.wustl.edu	37	1	52811772	52811772	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T3-01	TCGA-A2-A0T3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	52811772	52811772	C	T	SNP	ZFYVE9	NM_004799	human	genbank	57_37b	+1	reviewed	missense	c.4157	p.S1386L	0.998	NULL	HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	-	no_errors	
