Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAM11	4185	genome.wustl.edu	37	17	42851729	42851729	+	Silent	SNP	C	C	T	rs35936481	byCluster;by1000genomes	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42851729	42851729	C	T	SNP	ADAM11	NM_002390	human	genbank	57_37b	+1	reviewed	silent	c.1059	p.H353	0.991	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,superfamily_EGF/Laminin,PatternScan_EGF_1"	-		
ARHGEF4	50649	genome.wustl.edu	37	2	131802045	131802045	+	Silent	SNP	C	C	T	rs10928515	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	131802045	131802045	C	T	SNP	ARHGEF4	NM_015320	human	genbank	57_37b	+1	reviewed	silent	c.1773	p.P591	0.008	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-		
BAIAP3	8938	genome.wustl.edu	37	16	1397942	1397942	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1397942	1397942	T	C	SNP	BAIAP3	NM_003933	human	genbank	57_37b	+1	reviewed	missense	c.3178	p.F1060L	1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD	-	no_errors	
C18orf55	29090	genome.wustl.edu	37	18	71816295	71816296	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	71816295	71816296	TG	-	DEL	C18orf55	NM_014177	human	genbank	57_37b	+1	validated	frame_shift_del	c.252_253	p.V85fs	0.482:0.558	NULL	HMMPfam_TIM21	(deletion:cds_exon[71816044,71816344])	no_errors	
CALD1	800	genome.wustl.edu	37	7	134645312	134645312	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	134645312	134645312	C	A	SNP	CALD1	NM_033138	human	genbank	57_37b	+1	reviewed	missense	c.2228	p.S743Y	1.000	HMMPfam_Caldesmon	HMMPfam_Caldesmon,PatternScan_PHOSPHOPANTETHEINE	-	no_errors	
CD93	22918	genome.wustl.edu	37	20	23065548	23065548	+	Missense_Mutation	SNP	C	C	A	rs41347947	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	23065548	23065548	C	A	SNP	CD93	NM_012072	human	genbank	57_37b	-1	reviewed	missense	c.1282	p.V428L	0.948	superfamily_SSF57196,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA	PatternScan_C_TYPE_LECTIN_1,HMMSmart_CLECT,superfamily_C-type_lectin_fold,HMMPfam_Lectin_C,HMMSmart_EGF,superfamily_SSF57196,PatternScan_EGF_2,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL	-		
CDK5RAP2	55755	genome.wustl.edu	37	9	123239714	123239714	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	123239714	123239714	T	A	SNP	CDK5RAP2	NM_018249	human	genbank	57_37b	-1	reviewed	silent	c.1641	p.S547	0.998	NULL	HMMPfam_Microtub_assoc	-	no_errors	
CHST5	23563	genome.wustl.edu	37	16	75563330	75563330	+	Missense_Mutation	SNP	G	A	A	rs3826107	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	75563330	75563330	G	A	SNP	CHST5	NM_024533	human	genbank	57_37b	-1	validated	missense	c.953	p.T318M	0.998	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-		
CTCF	10664	genome.wustl.edu	37	16	67645853	67645854	+	Splice_Site	INS	-	-	TAC	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67645853	67645854	-	TAC	INS	CTCF	NM_006565	human	genbank	57_37b	+1	reviewed	splice_site_ins	c.782-1_782-1	e2-1	1.000:1.000	-	-	-	no_errors	
CUX1	1523	genome.wustl.edu	37	7	101845133	101845134	+	In_Frame_Ins	INS	-	-	GGCAGCGGT	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	101845133	101845134	-	GGCAGCGGT	INS	CUX1	NM_181552	human	genbank	57_37b	+1	reviewed	in_frame_ins	c.2556_2557	p.856in_frame_insSGG	0.055:0.086	NULL	superfamily_lambda repressor-like DNA-binding domains,HMMPfam_CUT,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
CYP21A2	1589	genome.wustl.edu	37	6	32006951	32006951	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32006951	32006951	C	T	SNP	CYP21A2	NM_000500	human	genbank	57_37b	+1	reviewed	missense	c.373	p.R125C	0.820	superfamily_Cytochrome_P450,HMMPfam_p450	superfamily_Cytochrome_P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors	
CYP27A1	1593	genome.wustl.edu	37	2	219647024	219647024	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	219647024	219647024	C	T	SNP	CYP27A1	NM_000784	human	genbank	57_37b	+1	reviewed	missense	c.119	p.A40V	0.001	NULL	superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors	
CYTH4	27128	genome.wustl.edu	37	22	37707034	37707034	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	37707034	37707034	C	T	SNP	CYTH4	NM_013385	human	genbank	57_37b	+1	reviewed	missense	c.814	p.R272C	1.000	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors	
ECHDC2	55268	genome.wustl.edu	37	1	53370727	53370728	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	53370727	53370728	-	C	INS	ECHDC2	NM_018281	human	genbank	57_37b	-1	validated	frame_shift_ins	c.400_399	p.R133fs	0.242:0.048	superfamily_SSF52096,HMMPfam_ECH	superfamily_SSF52096,HMMPfam_ECH	-	no_errors	
ENSG00000184785	0	genome.wustl.edu	37	X	134125278	134125278	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	134125278	134125278	C	T	SNP	ENSG00000184785	ENST00000330288	human	ensembl	57_37b	+1	known	silent	c.387	p.L129	0.998	NULL	NULL	-	no_errors	
ENSG00000231942	0	genome.wustl.edu	37	8	82720107	82720107	+	Missense_Mutation	SNP	T	T	C	rs2600601	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	82720107	82720107	T	C	SNP	ENSG00000231942	ENST00000417520	human	ensembl	57_37b	+1	known	missense	c.59	p.F20S	1.000	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1	-		
EPX	8288	genome.wustl.edu	37	17	56271379	56271379	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56271379	56271379	G	A	SNP	EPX	NM_000502	human	genbank	57_37b	+1	reviewed	missense	c.520	p.E174K	0.585	superfamily_Peroxidase_super,HMMPfam_An_peroxidase	PatternScan_PEROXIDASE_2,superfamily_Peroxidase_super,HMMPfam_An_peroxidase,PatternScan_PEROXIDASE_1	-	no_errors	
FAM117B	150864	genome.wustl.edu	37	2	203630190	203630190	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	203630190	203630190	C	A	SNP	FAM117B	NM_173511	human	genbank	57_37b	+1	validated	silent	c.741	p.I247	0.999	NULL	NULL	-	no_errors	
FAM43A	131583	genome.wustl.edu	37	3	194408411	194408412	+	In_Frame_Ins	INS	-	-	CGGCAGAGGGAGATC	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	194408411	194408412	-	CGGCAGAGGGAGATC	INS	FAM43A	NM_153690	human	genbank	57_37b	+1	validated	in_frame_ins	c.856_857	p.290in_frame_insDPAEG	0.000:0.000	NULL	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID	-	no_errors	
GPR160	26996	genome.wustl.edu	37	3	169802155	169802155	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	169802155	169802155	T	A	SNP	GPR160	NM_014373	human	genbank	57_37b	+1	validated	missense	c.395	p.F132Y	0.000	NULL	PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
HDAC8	55869	genome.wustl.edu	37	X	71571588	71571588	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	71571588	71571588	A	T	SNP	HDAC8	NM_018486	human	genbank	57_37b	-1	reviewed	missense	c.1106	p.I369N	1.000	superfamily_Arginase/deacetylase	superfamily_Arginase/deacetylase,HMMPfam_Hist_deacetyl	-	no_errors	
IMPG1	3617	genome.wustl.edu	37	6	76640790	76640790	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	76640790	76640790	G	A	SNP	IMPG1	NM_001563	human	genbank	57_37b	-1	provisional	missense	c.2123	p.A708V	0.876	NULL	superfamily_SSF82671,HMMPfam_SEA,HMMSmart_SEA	-	no_errors	
KCTD14	65987	genome.wustl.edu	37	11	77734294	77734294	+	Missense_Mutation	SNP	A	A	T	rs78436350	byCluster;by1000genomes	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	77734294	77734294	A	T	SNP	KCTD14	NM_023930	human	genbank	57_37b	-1	validated	missense	c.2	p.M1K	0.004	NULL	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra	-		
KIAA0664	23277	genome.wustl.edu	37	17	2595964	2595964	+	Silent	SNP	G	G	A	rs2302199	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	2595964	2595964	G	A	SNP	KIAA0664	NM_015229	human	genbank	57_37b	-1	validated	silent	c.3222	p.A1074	0.998	superfamily_SSF48452	superfamily_SSF103107,superfamily_SSF48452	-		
LOC100288342	0	genome.wustl.edu	37	2	15731877	15731877	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	15731877	15731877	G	T	SNP	LOC100288342	XM_002342194	human	genbank	57_37b	-1	model	missense	c.628	p.P210T	0.000	NULL	NULL	-	no_errors	
LOC100288755	0	genome.wustl.edu	37	21	9866073	9866073	+	RNA	SNP	C	C	G	rs6841165	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	9866073	9866073	C	G	SNP	LOC100288755	XR_078568	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.002	-	-	-		
LOC100291814	0	genome.wustl.edu	37	X	511729	511729	+	Missense_Mutation	SNP	C	C	T	rs73623194	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	511729	511729	C	T	SNP	LOC100291814	XM_002346328	human	genbank	57_37b	+1	model	missense	c.524	p.T175I	0.075	NULL	NULL	-		
LOC392232	0	genome.wustl.edu	37	8	73149156	73149157	+	RNA	INS	-	-	T	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	73149156	73149157	-	T	INS	LOC392232	XR_037363	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.994:0.986	-	-	-	no_errors	
LOC440300	440300	genome.wustl.edu	37	15	84858929	84858929	+	RNA	SNP	A	A	G	rs71241325	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	84858929	84858929	A	G	SNP	LOC440300	XR_078504	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.002	-	-	-		
LOC654780	654780	genome.wustl.edu	37	16	84228613	84228613	+	RNA	DEL	T	T	-	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	84228613	84228613	T	-	DEL	LOC654780	XR_040612	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.005	-	-	(deletion:rna[84228363,84228762])	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56181812	56181814	+	In_Frame_Del	DEL	GTT	GTT	-	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	GTT	GTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56181812	56181814	GTT	-	DEL	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	in_frame_del	c.4036_4038	p.V1346in_frame_del	0.983:1.000:0.998	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[56181759,56181890])	no_errors	
MAST1	22983	genome.wustl.edu	37	19	12985576	12985576	+	Silent	SNP	A	A	G	rs11085822	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12985576	12985576	A	G	SNP	MAST1	NM_014975	human	genbank	57_37b	+1	validated	silent	c.4605	p.S1535	0.000	NULL	PatternScan_PROTEIN_KINASE_ATP,HMMPfam_DUF1908,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ	-		
MYO9B	4650	genome.wustl.edu	37	19	17303774	17303774	+	Missense_Mutation	SNP	T	T	G	rs1545620	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17303774	17303774	T	G	SNP	MYO9B	NM_004145	human	genbank	57_37b	+1	reviewed	missense	c.3031	p.S1011A	0.000	HMMSmart_IQ,superfamily_SSF52540,HMMPfam_IQ	HMMPfam_RA,HMMSmart_RA,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-		
OBSL1	23363	genome.wustl.edu	37	2	220421417	220421417	+	Missense_Mutation	SNP	C	C	G	rs1983210	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220421417	220421417	C	G	SNP	OBSL1	NM_015311	human	genbank	57_37b	-1	provisional	missense	c.4095	p.E1365D	1.000	superfamily_SSF48726	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_ig,HMMPfam_fn3,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_V-set	-		
OR5K4	403278	genome.wustl.edu	37	3	98073612	98073612	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	98073612	98073612	T	C	SNP	OR5K4	NM_001005517	human	genbank	57_37b	+1	provisional	silent	c.915	p.Y305	0.001	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PDE12	201626	genome.wustl.edu	37	3	57543003	57543003	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	57543003	57543003	T	C	SNP	PDE12	NM_177966	human	genbank	57_37b	+1	validated	silent	c.897	p.S299	0.937	HMMPfam_Exo_endo_phos,superfamily_DNase I-like	HMMPfam_Exo_endo_phos,superfamily_DNase I-like	-	no_errors	
PLEKHG4B	153478	genome.wustl.edu	37	5	143534	143534	+	Missense_Mutation	SNP	G	G	A	rs13436090	byCluster;byFrequency;by1000genomes	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	143534	143534	G	A	SNP	PLEKHG4B	NM_052909	human	genbank	57_37b	+1	validated	missense	c.659	p.R220H	0.992	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMSmart_SM00233	-		
RBBP6	5930	genome.wustl.edu	37	16	24567190	24567190	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	24567190	24567190	C	T	SNP	RBBP6	NM_006910	human	genbank	57_37b	+1	reviewed	silent	c.486	p.F162	0.998	superfamily_Retrovirus zinc finger-like domains,HMMPfam_zf-CCHC,HMMSmart_SM00343	HMMPfam_DWNN,superfamily_Retrovirus zinc finger-like domains,HMMPfam_zf-CCHC,HMMSmart_SM00343,superfamily_RING/U-box,HMMPfam_U-box,HMMSmart_SM00184	-	no_errors	
REG1A	5967	genome.wustl.edu	37	2	79350284	79350284	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	79350284	79350284	A	G	SNP	REG1A	NM_002909	human	genbank	57_37b	+1	reviewed	silent	c.444	p.K148	0.082	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors	
RIOK2	55781	genome.wustl.edu	37	5	96506986	96506986	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	96506986	96506986	T	C	SNP	RIOK2	NM_018343	human	genbank	57_37b	-1	validated	missense	c.703	p.I235V	1.000	superfamily_Kinase_like,HMMPfam_RIO1,PatternScan_RIO1	HMMPfam_Rio2_N,superfamily_SSF46785,superfamily_Kinase_like,HMMPfam_RIO1,PatternScan_RIO1	-	no_errors	
RUNX1	861	genome.wustl.edu	37	21	36171595	36171596	+	Splice_Site	INS	-	-	A	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	36171595	36171596	-	A	INS	RUNX1	NM_001754	human	genbank	57_37b	-1	reviewed	splice_site_ins	c.967+2_967+1	e7+2	1.000:1.000	-	-	-	no_errors	
SDK1	221935	genome.wustl.edu	37	7	4169665	4169665	+	Silent	SNP	G	G	A	rs61734776	byCluster;byFrequency;by1000genomes	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	4169665	4169665	G	A	SNP	SDK1	NM_152744	human	genbank	57_37b	+1	validated	silent	c.4065	p.A1355	0.001	superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-		
SFRS17A	8227	genome.wustl.edu	37	X	1719897	1719897	+	Missense_Mutation	SNP	C	C	G	rs28661622	byCluster	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	1719897	1719897	C	G	SNP	SFRS17A	NM_005088	human	genbank	57_37b	+1	validated	missense	c.1498	p.P500A	0.000	NULL	NULL	-		
SORCS1	114815	genome.wustl.edu	37	10	108427518	108427518	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	108427518	108427518	C	T	SNP	SORCS1	NM_001013031	human	genbank	57_37b	-1	reviewed	silent	c.2232	p.P744	0.008	HMMSmart_VPS10	superfamily_SSF110296,HMMSmart_VPS10,HMMSmart_PKD,superfamily_PKD,HMMPfam_PKD	-	no_errors	
TAB2	0	genome.wustl.edu	37	6	149699405	149699405	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	149699405	149699405	T	C	SNP	TAB2	NM_015093	human	genbank	57_37b	+1	reviewed	silent	c.354	p.N118	0.964	NULL	HMMPfam_CUE,HMMSmart_SM00546,superfamily_NZF domain,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1	-	no_errors	
TECPR1	25851	genome.wustl.edu	37	7	97852399	97852399	+	Missense_Mutation	SNP	G	G	A	rs11762014	byCluster;byHapMap;by1000genomes	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	97852399	97852399	G	A	SNP	TECPR1	NM_015395	human	genbank	57_37b	-1	provisional	missense	c.2831	p.P944L	0.727	HMMSmart_SM00706	HMMSmart_SM00706,HMMSmart_SM00693,HMMSmart_SM00694,HMMPfam_Hyd_WA,superfamily_PH domain-like	-		
TMEM119	338773	genome.wustl.edu	37	12	108986151	108986151	+	Silent	SNP	C	C	T	rs75619905	byCluster;by1000genomes	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	108986151	108986151	C	T	SNP	TMEM119	NM_181724	human	genbank	57_37b	-1	validated	silent	c.9	p.S3	0.000	NULL	NULL	-		
TMEM218	219854	genome.wustl.edu	37	11	124967604	124967604	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	124967604	124967604	G	A	SNP	TMEM218	NM_001080546	human	genbank	57_37b	-1	provisional	silent	c.246	p.V82	1.000	NULL	NULL	-	no_errors	
TPR	7175	genome.wustl.edu	37	1	186304588	186304588	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	186304588	186304588	C	G	SNP	TPR	NM_003292	human	genbank	57_37b	-1	reviewed	missense	c.4793	p.R1598P	1.000	NULL	superfamily_Prefoldin,HMMPfam_TPR_MLP1_2	-	no_errors	
UNC5CL	222643	genome.wustl.edu	37	6	41001859	41001859	+	Silent	SNP	G	G	A	rs114639063	by1000genomes	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	41001859	41001859	G	A	SNP	UNC5CL	NM_173561	human	genbank	57_37b	-1	provisional	silent	c.447	p.D149	0.506	HMMPfam_ZU5	HMMPfam_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-		
WDR34	89891	genome.wustl.edu	37	9	131398636	131398636	+	Silent	SNP	C	C	T	rs10760570	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131398636	131398636	C	T	SNP	WDR34	NM_052844	human	genbank	57_37b	-1	validated	silent	c.627	p.Q209	0.996	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-		
ZNF469	84627	genome.wustl.edu	37	16	88499539	88499539	+	Silent	SNP	C	G	G	rs9931465	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	88499539	88499539	C	G	SNP	ZNF469	NM_001127464	human	genbank	57_37b	+1	reviewed	silent	c.5577	p.T1859	0.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-		
ZNF486	90649	genome.wustl.edu	37	19	20308876	20308877	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	20308876	20308877	AA	-	DEL	ZNF486	NM_052852	human	genbank	57_37b	+1	provisional	frame_shift_del	c.1357_1358	p.K453fs	0.994:0.994	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[20307773,20308911])	no_errors	
ZNF503	84858	genome.wustl.edu	37	10	77159977	77159977	+	Silent	SNP	G	G	A	rs79343474	by1000genomes	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	77159977	77159977	G	A	SNP	ZNF503	NM_032772	human	genbank	57_37b	-1	validated	silent	c.471	p.T157	1.000	NULL	NULL	-		
ZNF627	199692	genome.wustl.edu	37	19	11727643	11727643	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0YF-01	TCGA-A2-A0YF-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11727643	11727643	G	T	SNP	ZNF627	NM_145295	human	genbank	57_37b	+1	validated	missense	c.325	p.V109F	0.003	HMMSmart_ZnF_C2H2	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
