Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACTN4	81	genome.wustl.edu	37	19	39196735	39196735	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39196735	39196735	C	G	SNP	ACTN4	NM_004924	human	genbank	57_37b	+1	reviewed	missense	c.536	p.P179R	1.000	superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_efhand_Ca_insen	-	no_errors	
ADCY6	112	genome.wustl.edu	37	12	49177113	49177113	+	Silent	SNP	T	T	G	rs2453486	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49177113	49177113	T	G	SNP	ADCY6	NM_015270	human	genbank	57_37b	-1	reviewed	silent	c.105	p.A35	0.051	NULL	HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-		
AGPAT1	10554	genome.wustl.edu	37	6	32138201	32138201	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32138201	32138201	C	T	SNP	AGPAT1	NM_006411	human	genbank	57_37b	-1	reviewed	splice_site	c.510+1	e3+1	1.000	-	-	-	no_errors	
ARHGAP36	0	genome.wustl.edu	37	X	130219619	130219619	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	130219619	130219619	C	A	SNP	ARHGAP36	NM_144967	human	genbank	57_37b	+1	validated	missense	c.1013	p.P338H	0.984	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
ATP8B1	5205	genome.wustl.edu	37	18	55328529	55328529	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	55328529	55328529	C	A	SNP	ATP8B1	NM_005603	human	genbank	57_37b	-1	reviewed	missense	c.2584	p.A862S	1.000	superfamily_SSF81665,superfamily_SSF56784	superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660	-	no_errors	
C11orf9	745	genome.wustl.edu	37	11	61533179	61533179	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	61533179	61533179	C	T	SNP	C11orf9	NM_001127392	human	genbank	57_37b	+1	validated	silent	c.129	p.S43	0.870	NULL	superfamily_p53-like transcription factors,HMMPfam_NDT80_PhoG	-	no_errors	
C20orf160	140706	genome.wustl.edu	37	20	30605793	30605793	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	30605793	30605793	G	T	SNP	C20orf160	NM_080625	human	genbank	57_37b	+1	validated	missense	c.294	p.E98D	1.000	NULL	NULL	-	no_errors	
C5orf25	375484	genome.wustl.edu	37	5	175717932	175717932	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	175717932	175717932	C	G	SNP	C5orf25	ENST00000420396	human	ensembl	57_37b	+1	known	missense	c.1348	p.L450V	0.656	NULL	NULL	-	no_errors	
C9orf131	138724	genome.wustl.edu	37	9	35044467	35044467	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35044467	35044467	C	A	SNP	C9orf131	NM_203299	human	genbank	57_37b	+1	validated	missense	c.1841	p.A614D	0.001	NULL	NULL	-	no_errors	
CADM2	253559	genome.wustl.edu	37	3	85935421	85935421	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	85935421	85935421	C	G	SNP	CADM2	NM_153184	human	genbank	57_37b	+1	validated	missense	c.452	p.S151C	0.996	superfamily_SSF48726,HMMPfam_C2-set_2	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_C2-set_2,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_4.1m	-	no_errors	
CBLB	868	genome.wustl.edu	37	3	105495384	105495384	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	105495384	105495384	C	T	SNP	CBLB	NM_170662	human	genbank	57_37b	-1	validated	missense	c.422	p.R141Q	1.000	HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl)	HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl),HMMPfam_Cbl_N2,superfamily_EF-hand,HMMPfam_Cbl_N3,superfamily_SH2 domain,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_UBA,HMMSmart_SM00165	-	no_errors	
CCDC30	0	genome.wustl.edu	37	1	43032078	43032078	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	43032078	43032078	C	T	SNP	CCDC30	NM_001080850	human	genbank	57_37b	+1	validated	nonsense	c.787	p.R263*	0.978	NULL	NULL	-	no_errors	
CHD6	84181	genome.wustl.edu	37	20	40161841	40161841	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	40161841	40161841	C	A	SNP	CHD6	NM_032221	human	genbank	57_37b	-1	reviewed	missense	c.402	p.K134N	1.000	NULL	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592	-	no_errors	
CYP26B1	56603	genome.wustl.edu	37	2	72362468	72362468	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	72362468	72362468	G	A	SNP	CYP26B1	NM_019885	human	genbank	57_37b	-1	reviewed	silent	c.510	p.R170	0.008	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors	
DAB2	1601	genome.wustl.edu	37	5	39377160	39377160	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	39377160	39377160	C	T	SNP	DAB2	NM_001343	human	genbank	57_37b	-1	validated	missense	c.1729	p.A577T	0.003	NULL	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,PatternScan_PFKB_KINASES_1	-	no_errors	
DIP2C	22982	genome.wustl.edu	37	10	327200	327200	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	327200	327200	C	T	SNP	DIP2C	NM_014974	human	genbank	57_37b	-1	reviewed	missense	c.4358	p.R1453Q	1.000	superfamily_SSF56801,HMMPfam_AMP-binding	PatternScan_AMP_BINDING,HMMPfam_DMAP_binding,superfamily_SSF56801,HMMPfam_AMP-binding	-	no_errors	
DKFZP434H168	0	genome.wustl.edu	37	16	56226638	56226639	+	RNA	INS	-	-	CA	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	56226638	56226639	-	CA	INS	DKFZP434H168	NR_026889	human	genbank	57_37b	-1	predicted	rna	NULL	NULL	0.000:0.271	-	-	-	no_errors	
DSG4	147409	genome.wustl.edu	37	18	28979503	28979503	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	28979503	28979503	T	A	SNP	DSG4	NM_001134453	human	genbank	57_37b	+1	reviewed	missense	c.1274	p.V425D	1.000	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1	-	no_errors	
ENSG00000225846	0	genome.wustl.edu	37	4	76958071	76958071	+	Missense_Mutation	SNP	G	G	C	rs10031983	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	76958071	76958071	G	C	SNP	ENSG00000225846	ENST00000446032	human	ensembl	57_37b	-1	known	missense	c.147	p.F49L	1.000	HMMPfam_Ribosomal_L36e	HMMPfam_Ribosomal_L36e	-		
ENSG00000234797	0	genome.wustl.edu	37	15	60061282	60061282	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	60061282	60061282	C	T	SNP	ENSG00000234797	ENST00000442655	human	ensembl	57_37b	+1	known	silent	c.732	p.D244	0.989	NULL	HMMPfam_Ribosomal_S3Ae,PatternScan_RIBOSOMAL_S3AE	-	no_errors	
ENSG00000246365	0	genome.wustl.edu	37	1	65343066	65343066	+	RNA	SNP	A	A	G	rs11208534	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	65343066	65343066	A	G	SNP	ENSG00000246365	ENST00000500010	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.982	-	-	-		
ENSG00000247686	0	genome.wustl.edu	37	2	3502398	3502398	+	RNA	SNP	C	C	T	rs1130165	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	3502398	3502398	C	T	SNP	ENSG00000247686	ENST00000499704	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000247966	0	genome.wustl.edu	37	20	48700189	48700189	+	RNA	SNP	A	A	G	rs78450391	byCluster;byFrequency;by1000genomes	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	48700189	48700189	A	G	SNP	ENSG00000247966	ENST00000499325	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
FAM3C	10447	genome.wustl.edu	37	7	121011389	121011389	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	121011389	121011389	G	A	SNP	FAM3C	NM_001040020	human	genbank	57_37b	-1	reviewed	silent	c.237	p.N79	1.000	NULL	NULL	-	no_errors	
FAM83C	128876	genome.wustl.edu	37	20	33875143	33875143	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	33875143	33875143	C	T	SNP	FAM83C	NM_178468	human	genbank	57_37b	-1	validated	missense	c.1439	p.R480Q	0.003	NULL	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease	-	no_errors	
FCAR	2204	genome.wustl.edu	37	19	55401036	55401036	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55401036	55401036	C	T	SNP	FCAR	NM_002000	human	genbank	57_37b	+1	reviewed	missense	c.671	p.T224M	0.000	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig	-	no_errors	
GPR34	2857	genome.wustl.edu	37	X	41555293	41555293	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	41555293	41555293	T	A	SNP	GPR34	NM_001097579	human	genbank	57_37b	+1	validated	missense	c.407	p.M136K	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
HOXA2	3199	genome.wustl.edu	37	7	27140422	27140422	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	27140422	27140422	C	T	SNP	HOXA2	NM_006735	human	genbank	57_37b	-1	reviewed	missense	c.1054	p.V352I	1.000	NULL	PatternScan_ANTENNAPEDIA,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
LRP1	4035	genome.wustl.edu	37	12	57573272	57573272	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57573272	57573272	C	T	SNP	LRP1	NM_002332	human	genbank	57_37b	+1	reviewed	silent	c.4899	p.D1633	0.895	superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,PatternScan_EGF_1	-	no_errors	
LRP12	29967	genome.wustl.edu	37	8	105503433	105503433	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	105503433	105503433	G	A	SNP	LRP12	NM_013437	human	genbank	57_37b	-1	reviewed	missense	c.2048	p.T683M	0.944	NULL	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1	-	no_errors	
LSM14A	26065	genome.wustl.edu	37	19	34699901	34699901	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	34699901	34699901	G	A	SNP	LSM14A	NM_001114093	human	genbank	57_37b	+1	validated	silent	c.483	p.A161	0.996	NULL	HMMPfam_DFDF,HMMPfam_FFD_TFG	-	no_errors	
MUC16	94025	genome.wustl.edu	37	19	9070608	9070608	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9070608	9070608	G	A	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	missense	c.16838	p.T5613I	0.000	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors	
MYO15A	51168	genome.wustl.edu	37	17	18044985	18044985	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18044985	18044985	C	T	SNP	MYO15A	NM_016239	human	genbank	57_37b	+1	reviewed	silent	c.5550	p.A1850	0.984	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMSmart_SM00139,HMMPfam_MyTH4,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M	-	no_errors	
OR10A4	283297	genome.wustl.edu	37	11	6898202	6898202	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6898202	6898202	T	G	SNP	OR10A4	NM_207186	human	genbank	57_37b	+1	validated	missense	c.324	p.F108L	0.950	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PADI1	29943	genome.wustl.edu	37	1	17563838	17563838	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17563838	17563838	T	C	SNP	PADI1	NM_013358	human	genbank	57_37b	+1	reviewed	missense	c.1343	p.V448A	0.998	HMMPfam_PAD,superfamily_Pentein	HMMPfam_PAD_N,superfamily_Cupredoxins,HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain,HMMPfam_PAD,superfamily_Pentein	-	no_errors	
PCTK3	5129	genome.wustl.edu	37	1	205494290	205494290	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	205494290	205494290	G	T	SNP	PCTK3	ENST00000437052	human	ensembl	57_37b	+1	known	nonsense	c.484	p.G162*	1.000	NULL	NULL	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936095	178936095	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936095	178936095	A	G	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1637	p.Q546R	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
POLQ	10721	genome.wustl.edu	37	3	121151152	121151152	+	Nonstop_Mutation	SNP	T	T	G	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121151152	121151152	T	G	SNP	POLQ	NM_199420	human	genbank	57_37b	-1	validated	nonstop	c.7772	p.*2591S	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Ribonuclease H-like,superfamily_DNA/RNA polymerases,HMMPfam_DNA_pol_A,HMMSmart_SM00482,PatternScan_DNA_POLYMERASE_A	-	no_errors	
PRDM2	7799	genome.wustl.edu	37	1	14106177	14106177	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	14106177	14106177	G	A	SNP	PRDM2	NM_012231	human	genbank	57_37b	+1	reviewed	silent	c.1887	p.L629	0.006	NULL	superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
PRKD2	25865	genome.wustl.edu	37	19	47193909	47193909	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	47193909	47193909	C	T	SNP	PRKD2	NM_001079880	human	genbank	57_37b	-1	reviewed	missense	c.1757	p.R586H	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
RCL1	10171	genome.wustl.edu	37	9	4841274	4841274	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	4841274	4841274	G	T	SNP	RCL1	NM_005772	human	genbank	57_37b	+1	validated	silent	c.627	p.V209	1.000	HMMPfam_RTC,superfamily_RNA3apos_cycl/enolpyr_transf_A/B,HMMPfam_RTC_insert	HMMPfam_RTC,superfamily_RNA3apos_cycl/enolpyr_transf_A/B,PatternScan_RTC,HMMPfam_RTC_insert	-	no_errors	
RHBDF2	79651	genome.wustl.edu	37	17	74475024	74475024	+	Missense_Mutation	SNP	G	G	A	rs3744045	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	74475024	74475024	G	A	SNP	RHBDF2	NM_024599	human	genbank	57_37b	-1	validated	missense	c.623	p.P208L	0.979	NULL	HMMPfam_Rhomboid	-		
SGOL1	151648	genome.wustl.edu	37	3	20212538	20212538	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	20212538	20212538	G	A	SNP	SGOL1	NM_001012410	human	genbank	57_37b	-1	provisional	missense	c.1469	p.A490V	0.023	HMMPfam_Shugoshin_C	HMMPfam_Shugoshin_N,PatternScan_LECTIN_LEGUME_BETA,HMMPfam_Shugoshin_C	-	no_errors	
SGSM3	27352	genome.wustl.edu	37	22	40804998	40804998	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	40804998	40804998	G	A	SNP	SGSM3	NM_015705	human	genbank	57_37b	+1	validated	missense	c.1964	p.R655H	1.000	HMMPfam_RUN,HMMSmart_SM00593	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_RUN,HMMSmart_SM00593	-	no_errors	
SLCO5A1	81796	genome.wustl.edu	37	8	70744079	70744079	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	70744079	70744079	C	-	DEL	SLCO5A1	NM_030958	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.830	p.G277fs	1.000	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2	(deletion:cds_exon[70744002,70744908])	no_errors	
SLCO5A1	81796	genome.wustl.edu	37	8	70744434	70744434	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	70744434	70744434	G	-	DEL	SLCO5A1	NM_030958	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.475	p.R159fs	1.000	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter	HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895	(deletion:cds_exon[70744002,70744908])	no_errors	
STX16	8675	genome.wustl.edu	37	20	57242358	57242358	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	57242358	57242358	G	C	SNP	STX16	ENST00000361770	human	ensembl	57_37b	+1	known	splice_site	c.93+1	e2+1	0.006	-	-	-	no_errors	
TMCC2	9911	genome.wustl.edu	37	1	205238746	205238746	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	205238746	205238746	G	C	SNP	TMCC2	NM_014858	human	genbank	57_37b	+1	validated	missense	c.1416	p.K472N	1.000	HMMPfam_Tmemb_cc2	HMMPfam_Tmemb_cc2	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578406	7578406	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.524	p.R175H	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-		
TRO	7216	genome.wustl.edu	37	X	54955461	54955461	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	54955461	54955461	C	-	DEL	TRO	NM_001039705	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2304	p.F769fs	0.934	NULL	HMMPfam_MAGE	(deletion:cds_exon[54955036,54957453])	no_errors	
TTN	7273	genome.wustl.edu	37	2	179597266	179597266	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179597266	179597266	C	T	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.12790	p.E4264K	1.000	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
TUBE1	51175	genome.wustl.edu	37	6	112397208	112397208	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	112397208	112397208	T	C	SNP	TUBE1	NM_016262	human	genbank	57_37b	-1	reviewed	silent	c.744	p.K248	0.023	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors	
UROC1	131669	genome.wustl.edu	37	3	126202257	126202257	+	Silent	SNP	G	G	A	rs1687477	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	126202257	126202257	G	A	SNP	UROC1	NM_144639	human	genbank	57_37b	-1	reviewed	silent	c.1845	p.A615	0.059	superfamily_Urocanase,HMMPfam_Urocanase	superfamily_Urocanase,HMMPfam_Urocanase,PatternScan_UROCANASE	-		
ZBTB39	9880	genome.wustl.edu	37	12	57397309	57397309	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57397309	57397309	G	A	SNP	ZBTB39	NM_014830	human	genbank	57_37b	-1	provisional	missense	c.1393	p.H465Y	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2	-	no_errors	
ZFP64	55734	genome.wustl.edu	37	20	50769369	50769369	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	50769369	50769369	C	G	SNP	ZFP64	NM_018197	human	genbank	57_37b	-1	validated	missense	c.1362	p.K454N	0.043	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF326	284695	genome.wustl.edu	37	1	90470614	90470614	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	90470614	90470614	T	C	SNP	ZNF326	ENST00000394583	human	ensembl	57_37b	+1	known	silent	c.114	p.D38	1.000	NULL	NULL	-	no_errors	
ZNF425	155054	genome.wustl.edu	37	7	148801816	148801816	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	148801816	148801816	C	T	SNP	ZNF425	NM_001001661	human	genbank	57_37b	-1	provisional	missense	c.1147	p.E383K	0.875	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZSWIM2	151112	genome.wustl.edu	37	2	187693402	187693402	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CJ-01	TCGA-A7-A0CJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	187693402	187693402	G	A	SNP	ZSWIM2	NM_182521	human	genbank	57_37b	-1	validated	missense	c.1211	p.A404V	0.000	NULL	HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_zf-C3HC4	-	no_errors	
