Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AAAS	8086	genome.wustl.edu	37	12	53708115	53708115	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53708115	53708115	A	G	SNP	AAAS	NM_015665	human	genbank	57_37b	-1	validated	missense	c.656	p.I219T	1.000	superfamily_WD40_like,HMMSmart_WD40	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
AADAT	51166	genome.wustl.edu	37	4	170988516	170988516	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	170988516	170988516	G	A	SNP	AADAT	NM_016228	human	genbank	57_37b	-1	reviewed	silent	c.924	p.H308	0.836	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2	-	no_errors	
ALDH1L1	10840	genome.wustl.edu	37	3	125824621	125824621	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	125824621	125824621	G	A	SNP	ALDH1L1	NM_012190	human	genbank	57_37b	-1	reviewed	silent	c.2601	p.D867	0.976	superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh	PatternScan_PHOSPHOPANTETHEINE,HMMPfam_Formyl_trans_N,superfamily_formyl_transf,PatternScan_GART,superfamily_FMT_C_like,HMMPfam_Formyl_trans_C,superfamily_ACP_like,superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors	
ATP9B	374868	genome.wustl.edu	37	18	77137328	77137328	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	77137328	77137328	T	G	SNP	ATP9B	NM_198531	human	genbank	57_37b	+1	validated	missense	c.3389	p.L1130R	1.000	NULL	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors	
C3	718	genome.wustl.edu	37	19	6679172	6679172	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6679172	6679172	G	A	SNP	C3	NM_000064	human	genbank	57_37b	-1	reviewed	missense	c.4594	p.R1532W	0.179	superfamily_TIMP-like	HMMPfam_A2M_N,HMMPfam_A2M_N_2,superfamily_Anaphylotoxins (complement system),HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep,superfamily_TIMP-like,HMMSmart_SM00643,HMMPfam_NTR	-	no_errors	
C3orf43	255798	genome.wustl.edu	37	3	196234930	196234930	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	196234930	196234930	C	T	SNP	C3orf43	NM_001077657	human	genbank	57_37b	-1	validated	missense	c.473	p.R158K	0.146	NULL	NULL	-	no_errors	
EDDM3A	0	genome.wustl.edu	37	14	21216114	21216114	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	21216114	21216114	C	A	SNP	EDDM3A	NM_006683	human	genbank	57_37b	+1	validated	missense	c.375	p.F125L	0.315	superfamily_RNaseA	superfamily_RNaseA	-	no_errors	
ENSG00000186232	0	genome.wustl.edu	37	11	4351613	4351613	+	Silent	SNP	G	G	A	rs364086	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4351613	4351613	G	A	SNP	ENSG00000186232	ENST00000334468	human	ensembl	57_37b	+1	known	silent	c.519	p.E173	0.997	HMMPfam_Ssu72	HMMPfam_Ssu72	-		
ENSG00000245911	0	genome.wustl.edu	37	11	3380000	3380001	+	RNA	INS	-	-	C	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	3380000	3380001	-	C	INS	ENSG00000245911	ENST00000500081	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.020:0.018	-	-	-	no_errors	
FAM90A12	645879	genome.wustl.edu	37	8	7885778	7885778	+	Missense_Mutation	SNP	G	G	C	rs62494526	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	7885778	7885778	G	C	SNP	FAM90A12	XM_928853	human	genbank	57_37b	-1	model	missense	c.775	p.Q259E	0.010	NULL	superfamily_SSF57756	-		
GDAP1	54332	genome.wustl.edu	37	8	75276444	75276444	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	75276444	75276444	A	G	SNP	GDAP1	NM_018972	human	genbank	57_37b	+1	reviewed	missense	c.919	p.T307A	1.000	NULL	HMMPfam_GST_N,superfamily_Thioredoxin-like,superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_GST_C	-	no_errors	
GOLGA6L3	0	genome.wustl.edu	37	15	83013937	83013938	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	83013937	83013938	-	T	INS	GOLGA6L3	ENST00000449790	human	ensembl	57_37b	-1	known	frame_shift_ins	c.646_645	p.H215fs	0.008:0.014	NULL	NULL	-	no_errors	
GPR101	83550	genome.wustl.edu	37	X	136112380	136112380	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	136112380	136112380	G	C	SNP	GPR101	NM_054021	human	genbank	57_37b	-1	validated	missense	c.1454	p.P485R	0.873	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
LAMB2	3913	genome.wustl.edu	37	3	49158663	49158663	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49158663	49158663	T	A	SNP	LAMB2	NM_002292	human	genbank	57_37b	-1	reviewed	missense	c.5393	p.Q1798L	1.000	NULL	HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2	-	no_errors	
LOC440300	440300	genome.wustl.edu	37	15	84860930	84860930	+	RNA	SNP	G	G	A	rs4273011	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	84860930	84860930	G	A	SNP	LOC440300	XR_078504	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.981	-	-	-		
MAP3K1	4214	genome.wustl.edu	37	5	56178399	56178400	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56178399	56178400	-	T	INS	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_ins	c.3372_3373	p.N1124fs	1.000:1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56178400	56178400	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56178400	56178400	A	G	SNP	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	missense	c.3373	p.N1125D	1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56189387	56189387	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56189387	56189387	C	-	DEL	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_del	c.4419	p.P1474fs	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	(deletion:cds_exon[56189358,56189507])	no_errors	
MLL3	58508	genome.wustl.edu	37	7	151904386	151904386	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151904386	151904386	T	C	SNP	MLL3	NM_170606	human	genbank	57_37b	-1	reviewed	silent	c.3840	p.P1280	1.000	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors	
MYCBP2	23077	genome.wustl.edu	37	13	77671946	77671946	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	77671946	77671946	T	C	SNP	MYCBP2	NM_015057	human	genbank	57_37b	-1	validated	missense	c.9229	p.I3077V	1.000	NULL	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,HMMPfam_PHR,superfamily_E set domains,superfamily_Galactose-binding domain-like,superfamily_RING/U-box,HMMSmart_SM00184	-	no_errors	
NACA	4666	genome.wustl.edu	37	12	57118242	57118242	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57118242	57118242	C	T	SNP	NACA	NM_001113203	human	genbank	57_37b	-1	validated	missense	c.64	p.E22K	1.000	NULL	HMMPfam_NAC,HMMPfam_UBA	-	no_errors	
OR2T2	401992	genome.wustl.edu	37	1	248616749	248616749	+	Silent	SNP	C	C	G	rs1770044	byFrequency	TCGA-A8-A06P-01	TCGA-A8-A06P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248616749	248616749	C	G	SNP	OR2T2	NM_001004136	human	genbank	57_37b	+1	provisional	silent	c.651	p.V217	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-		
PIP5K1C	23396	genome.wustl.edu	37	19	3656491	3656491	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3656491	3656491	T	C	SNP	PIP5K1C	NM_012398	human	genbank	57_37b	-1	reviewed	missense	c.533	p.Y178C	1.000	superfamily_SSF56104,HMMSmart_PIPKc,HMMPfam_PIP5K	superfamily_SSF56104,HMMSmart_PIPKc,HMMPfam_PIP5K	-	no_errors	
POLQ	10721	genome.wustl.edu	37	3	121207309	121207309	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121207309	121207309	A	G	SNP	POLQ	NM_199420	human	genbank	57_37b	-1	validated	missense	c.4469	p.L1490P	0.993	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Ribonuclease H-like,superfamily_DNA/RNA polymerases,HMMPfam_DNA_pol_A,HMMSmart_SM00482,PatternScan_DNA_POLYMERASE_A	-	no_errors	
PTCHD1	139411	genome.wustl.edu	37	X	23412005	23412005	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	23412005	23412005	C	T	SNP	PTCHD1	NM_173495	human	genbank	57_37b	+1	validated	silent	c.2370	p.A790	1.000	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors	
SMTNL1	219537	genome.wustl.edu	37	11	57311158	57311158	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	57311158	57311158	C	A	SNP	SMTNL1	NM_001105565	human	genbank	57_37b	+1	provisional	missense	c.848	p.A283E	0.446	NULL	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain	-	no_errors	
SYNCRIP	10492	genome.wustl.edu	37	6	86350199	86350199	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	86350199	86350199	G	A	SNP	SYNCRIP	NM_006372	human	genbank	57_37b	-1	validated	nonsense	c.232	p.Q78*	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
TCF19	6941	genome.wustl.edu	37	6	31127397	31127398	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31127397	31127398	-	A	INS	TCF19	NM_001077511	human	genbank	57_37b	+1	validated	frame_shift_ins	c.151_152	p.G51fs	0.800:0.937	superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA	superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA,superfamily_FYVE_PHD_ZnF,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_PHD	-	no_errors	
TRIM28	10155	genome.wustl.edu	37	19	59061549	59061549	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06P-01	TCGA-A8-A06P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	59061549	59061549	C	T	SNP	TRIM28	NM_005762	human	genbank	57_37b	+1	reviewed	silent	c.2229	p.I743	0.962	HMMSmart_SM00297	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00502,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00297	-	no_errors	
