Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCA8	10351	genome.wustl.edu	37	17	66873755	66873755	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	66873755	66873755	G	A	SNP	ABCA8	NM_007168	human	genbank	57_37b	-1	reviewed	silent	c.3984	p.N1328	0.583	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	-	no_errors	
C20orf7	79133	genome.wustl.edu	37	20	13769239	13769239	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	13769239	13769239	T	G	SNP	C20orf7	NM_024120	human	genbank	57_37b	+1	reviewed	missense	c.268	p.F90V	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_11	-	no_errors	
CBLN4	140689	genome.wustl.edu	37	20	54579007	54579007	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	54579007	54579007	G	A	SNP	CBLN4	NM_080617	human	genbank	57_37b	-1	reviewed	missense	c.221	p.S74L	1.000	HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q	HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q	-	no_errors	
CCT6B	10693	genome.wustl.edu	37	17	33269814	33269814	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	33269814	33269814	C	T	SNP	CCT6B	NM_006584	human	genbank	57_37b	-1	reviewed	splice_site	c.725+1	e6+1	1.000	-	-	-	no_errors	
CLPX	10845	genome.wustl.edu	37	15	65450966	65450966	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	65450966	65450966	T	A	SNP	CLPX	NM_006660	human	genbank	57_37b	-1	provisional	missense	c.839	p.D280V	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA_2,HMMSmart_SM00382,HMMPfam_ClpB_D2-small	-	no_errors	
CYTH3	9265	genome.wustl.edu	37	7	6210236	6210236	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	6210236	6210236	C	T	SNP	CYTH3	NM_004227	human	genbank	57_37b	-1	reviewed	silent	c.753	p.P251	0.339	superfamily_Sec7 domain	superfamily_Sec7 domain,HMMPfam_Sec7,HMMSmart_SM00222,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
DKK4	27121	genome.wustl.edu	37	8	42234500	42234500	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	42234500	42234500	C	A	SNP	DKK4	NM_014420	human	genbank	57_37b	-1	reviewed	missense	c.64	p.D22Y	1.000	NULL	HMMPfam_Dickkopf_N	-	no_errors	
DMD	1756	genome.wustl.edu	37	X	32867884	32867884	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	32867884	32867884	G	T	SNP	DMD	NM_004006	human	genbank	57_37b	-1	reviewed	silent	c.147	p.R49	1.000	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_t-snare proteins,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Prefoldin	-	no_errors	
EXOC6	54536	genome.wustl.edu	37	10	94653227	94653227	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	94653227	94653227	G	C	SNP	EXOC6	NM_019053	human	genbank	57_37b	+1	reviewed	missense	c.223	p.D75H	1.000	NULL	HMMPfam_Sec15	-	no_errors	
FAM120B	84498	genome.wustl.edu	37	6	170626796	170626801	+	In_Frame_Del	DEL	CAAGAA	CAAGAA	-	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	CAAGAA	CAAGAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	170626796	170626801	CAAGAA	-	DEL	FAM120B	NM_032448	human	genbank	57_37b	+1	provisional	in_frame_del	c.318_323	p.KN107in_frame_del	0.890:0.993:0.997:0.998:1.000:1.000	superfamily_PIN domain-like	superfamily_PIN domain-like,PatternScan_FGGY_KINASES_1	(deletion:cds_exon[170626479,170628212])	no_errors	
GAB3	139716	genome.wustl.edu	37	X	153928295	153928295	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153928295	153928295	C	T	SNP	GAB3	NM_001081573	human	genbank	57_37b	-1	reviewed	missense	c.1109	p.R370Q	1.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
GABRA1	2554	genome.wustl.edu	37	5	161309644	161309644	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	161309644	161309644	C	A	SNP	GABRA1	NM_000806	human	genbank	57_37b	+1	reviewed	missense	c.640	p.R214S	1.000	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors	
GALNT13	114805	genome.wustl.edu	37	2	155157929	155157929	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	155157929	155157929	A	G	SNP	GALNT13	NM_052917	human	genbank	57_37b	+1	validated	missense	c.983	p.Q328R	1.000	superfamily_Nucleotide-diphospho-sugar transferases	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin	-	no_errors	
GOLGA5	9950	genome.wustl.edu	37	14	93273140	93273140	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	93273140	93273140	G	T	SNP	GOLGA5	NM_005113	human	genbank	57_37b	+1	reviewed	missense	c.604	p.V202L	0.000	NULL	HMMPfam_Golgin_A5,superfamily_Prefoldin	-	no_errors	
HIST1H4J	8363	genome.wustl.edu	37	6	27792030	27792030	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	27792030	27792030	G	T	SNP	HIST1H4J	NM_021968	human	genbank	57_37b	+1	reviewed	missense	c.128	p.G43V	1.000	superfamily_Histone-fold,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803	superfamily_Histone-fold,PatternScan_HISTONE_H4,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803	-	no_errors	
KDM6A	7403	genome.wustl.edu	37	X	44911035	44911035	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	44911035	44911035	T	-	DEL	KDM6A	NM_021140	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.736	p.L246fs	1.000	superfamily_SSF48452	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR,HMMSmart_JmjC,HMMPfam_JmjC	(deletion:cds_exon[44910954,44911047])	no_errors	
KIAA0467	23334	genome.wustl.edu	37	1	43908290	43908290	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	43908290	43908290	G	A	SNP	KIAA0467	NM_015284	human	genbank	57_37b	+1	predicted	splice_site	c.5454+1	e41+1	1.000	-	-	-	no_errors	
KIF3B	9371	genome.wustl.edu	37	20	30898744	30898744	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	30898744	30898744	C	T	SNP	KIF3B	NM_004798	human	genbank	57_37b	+1	reviewed	silent	c.1164	p.G388	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors	
MTOR	2475	genome.wustl.edu	37	1	11169377	11169377	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11169377	11169377	T	A	SNP	MTOR	NM_004958	human	genbank	57_37b	-1	reviewed	missense	c.7498	p.I2500F	1.000	NULL	superfamily_ARM-type_fold,superfamily_SSF48452,HMMPfam_FAT,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors	
NEK11	79858	genome.wustl.edu	37	3	131068491	131068491	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	131068491	131068491	G	A	SNP	NEK11	NM_024800	human	genbank	57_37b	+1	reviewed	silent	c.1809	p.E603	1.000	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
OR11H6	122748	genome.wustl.edu	37	14	20692496	20692496	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	20692496	20692496	G	T	SNP	OR11H6	NM_001004480	human	genbank	57_37b	+1	provisional	missense	c.628	p.A210S	0.201	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR4C45	403257	genome.wustl.edu	37	11	48373834	48373834	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	48373834	48373834	A	-	DEL	OR4C45	ENST00000415304	human	ensembl	57_37b	-1	known	frame_shift_del	c.166	p.S56fs	0.990	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	(deletion:cds_exon[48373669,48373999])	no_errors	
PPFIBP2	8495	genome.wustl.edu	37	11	7672916	7672916	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	7672916	7672916	C	G	SNP	PPFIBP2	NM_003621	human	genbank	57_37b	+1	validated	silent	c.2277	p.T759	0.664	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2	HMMPfam_Integrase_DNA,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2	-	no_errors	
PRPF39	55015	genome.wustl.edu	37	14	45579794	45579794	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	45579794	45579794	A	C	SNP	PRPF39	NM_017922	human	genbank	57_37b	+1	validated	missense	c.1346	p.E449A	0.999	superfamily_TPR-like	superfamily_TPR-like,HMMSmart_SM00386	-	no_errors	
RPS21	6227	genome.wustl.edu	37	20	60963055	60963055	+	Nonstop_Mutation	SNP	T	T	C	rs911077	byCluster;byFrequency;by1000genomes	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60963055	60963055	T	C	SNP	RPS21	ENST00000370592	human	ensembl	57_37b	+1	known	nonstop	c.271	p.*91Q	0.000	NULL	HMMPfam_Ribosomal_S21e,PatternScan_RIBOSOMAL_S21E	-		
RYR1	6261	genome.wustl.edu	37	19	38933047	38933047	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38933047	38933047	G	A	SNP	RYR1	NM_000540	human	genbank	57_37b	+1	reviewed	missense	c.224	p.R75Q	1.000	HMMPfam_Ins145_P3_rec	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SAMD9	54809	genome.wustl.edu	37	7	92733834	92733834	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	92733834	92733834	G	A	SNP	SAMD9	NM_017654	human	genbank	57_37b	-1	validated	missense	c.1577	p.S526L	1.000	NULL	superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors	
SCYL2	55681	genome.wustl.edu	37	12	100676854	100676854	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	100676854	100676854	C	T	SNP	SCYL2	NM_017988	human	genbank	57_37b	+1	provisional	nonsense	c.106	p.R36*	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,superfamily_ARM repeat	-	no_errors	
SHB	6461	genome.wustl.edu	37	9	37948724	37948724	+	Silent	SNP	T	T	C	rs3827519	byCluster;byFrequency;by1000genomes	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	37948724	37948724	T	C	SNP	SHB	NM_003028	human	genbank	57_37b	-1	validated	silent	c.1254	p.G418	0.544	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-		
TXNDC11	51061	genome.wustl.edu	37	16	11792021	11792021	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	11792021	11792021	G	T	SNP	TXNDC11	NM_015914	human	genbank	57_37b	-1	provisional	missense	c.1067	p.P356H	1.000	NULL	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin	-	no_errors	
USP31	57478	genome.wustl.edu	37	16	23085124	23085124	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A06Y-01	TCGA-A8-A06Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	23085124	23085124	C	A	SNP	USP31	NM_020718	human	genbank	57_37b	-1	validated	missense	c.2254	p.V752F	1.000	superfamily_Cysteine proteinases,HMMPfam_UCH	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
