Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCA13	154664	genome.wustl.edu	37	7	48315435	48315435	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	48315435	48315435	C	G	SNP	ABCA13	NM_152701	human	genbank	57_37b	+1	reviewed	missense	c.6172	p.L2058V	0.001	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	-	no_errors	
ANKRD17	26057	genome.wustl.edu	37	4	74124127	74124127	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	74124127	74124127	C	T	SNP	ANKRD17	NM_032217	human	genbank	57_37b	-1	reviewed	missense	c.259	p.E87K	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_MutS_V,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1	-	no_errors	
APBA3	9546	genome.wustl.edu	37	19	3753769	3753769	+	Silent	SNP	C	C	T	rs3746120	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3753769	3753769	C	T	SNP	APBA3	NM_004886	human	genbank	57_37b	-1	reviewed	silent	c.1005	p.A335	0.160	superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID	superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	-		
ARHGDIB	397	genome.wustl.edu	37	12	15095600	15095600	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	15095600	15095600	C	A	SNP	ARHGDIB	NM_001175	human	genbank	57_37b	-1	validated	missense	c.462	p.E154D	1.000	HMMPfam_Rho_GDI,superfamily_E set domains	HMMPfam_Rho_GDI,superfamily_E set domains	-	no_errors	
ARHGEF12	23365	genome.wustl.edu	37	11	120352172	120352172	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	120352172	120352172	G	T	SNP	ARHGEF12	NM_015313	human	genbank	57_37b	+1	reviewed	nonsense	c.4441	p.G1481*	1.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_RGS-like,superfamily_Regulator of G-protein signaling RGS,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMSmart_SM00233	-	no_errors	
ATP2B4	493	genome.wustl.edu	37	1	203702418	203702418	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	203702418	203702418	G	T	SNP	ATP2B4	NM_001001396	human	genbank	57_37b	+1	reviewed	missense	c.3377	p.G1126V	1.000	NULL	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,HMMPfam_Hydrolase,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors	
ATRX	546	genome.wustl.edu	37	X	76949382	76949382	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	76949382	76949382	C	-	DEL	ATRX	NM_000489	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.415	p.D139fs	1.000	NULL	superfamily_FYVE/PHD zinc finger,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C	(deletion:cds_exon[76949313,76949426])	no_errors	
C6orf124	653483	genome.wustl.edu	37	6	168226763	168226763	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	168226763	168226763	C	T	SNP	C6orf124	ENST00000357510	human	ensembl	57_37b	-1	known	missense	c.373	p.G125S	0.000	NULL	NULL	-	no_errors	
CASC4	113201	genome.wustl.edu	37	15	44630015	44630015	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	44630015	44630015	C	G	SNP	CASC4	NM_138423	human	genbank	57_37b	+1	reviewed	missense	c.631	p.Q211E	0.981	NULL	NULL	-	no_errors	
CDK17	0	genome.wustl.edu	37	12	96728499	96728499	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	96728499	96728499	T	C	SNP	CDK17	NM_002595	human	genbank	57_37b	-1	reviewed	missense	c.116	p.N39S	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
CEP164	22897	genome.wustl.edu	37	11	117263223	117263223	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	117263223	117263223	C	G	SNP	CEP164	NM_014956	human	genbank	57_37b	+1	validated	missense	c.2373	p.S791R	0.922	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW	-	no_errors	
CLK2P	1197	genome.wustl.edu	37	7	23624570	23624570	+	RNA	SNP	G	G	C	rs227933	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	23624570	23624570	G	C	SNP	CLK2P	NR_002711	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.001	-	-	-		
COL1A1	1277	genome.wustl.edu	37	17	48270012	48270012	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48270012	48270012	G	T	SNP	COL1A1	NM_000088	human	genbank	57_37b	-1	reviewed	missense	c.1918	p.P640T	1.000	HMMPfam_Collagen	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors	
COL5A2	1290	genome.wustl.edu	37	2	189898939	189898939	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	189898939	189898939	G	A	SNP	COL5A2	NM_000393	human	genbank	57_37b	-1	reviewed	missense	c.4357	p.R1453W	1.000	HMMSmart_COLFI,HMMPfam_COLFI	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI	-	no_errors	
CPAMD8	27151	genome.wustl.edu	37	19	17015133	17015133	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17015133	17015133	A	G	SNP	CPAMD8	NM_015692	human	genbank	57_37b	-1	validated	missense	c.4295	p.L1432P	1.000	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp	HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep,superfamily_Kazal-type serine protease inhibitors,HMMSmart_SM00280,HMMPfam_Kazal_1	-	no_errors	
CYB5R4	51167	genome.wustl.edu	37	6	84574045	84574045	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	84574045	84574045	G	C	SNP	CYB5R4	NM_016230	human	genbank	57_37b	+1	validated	missense	c.227	p.R76T	1.000	superfamily_Cyt_B5,HMMPfam_Cyt-b5	superfamily_Cyt_B5,HMMPfam_Cyt-b5,PatternScan_CYTOCHROME_B5_1,superfamily_HSP20_chap,HMMPfam_CS,superfamily_Riboflavin_synthase_like_b-brl,HMMPfam_FAD_binding_6,superfamily_SSF52343,HMMPfam_NAD_binding_1	-	no_errors	
CYHR1	50626	genome.wustl.edu	37	8	145678614	145678614	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145678614	145678614	C	T	SNP	CYHR1	NM_138496	human	genbank	57_37b	-1	validated	missense	c.476	p.C159Y	1.000	superfamily_TRAF domain-like	superfamily_RING/U-box,superfamily_TRAF domain-like	-	no_errors	
DAPK1	1612	genome.wustl.edu	37	9	90252867	90252867	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	90252867	90252867	T	A	SNP	DAPK1	NM_004938	human	genbank	57_37b	+1	reviewed	silent	c.294	p.G98	0.994	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SSF52540,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors	
DDX27	55661	genome.wustl.edu	37	20	47839853	47839853	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	47839853	47839853	G	T	SNP	DDX27	NM_017895	human	genbank	57_37b	+1	reviewed	nonsense	c.442	p.E148*	0.004	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
EDEM2	55741	genome.wustl.edu	37	20	33711728	33711728	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	33711728	33711728	G	T	SNP	EDEM2	NM_018217	human	genbank	57_37b	-1	validated	missense	c.1079	p.T360K	1.000	superfamily_Seven-hairpin glycosidases,HMMPfam_Glyco_hydro_47	superfamily_Seven-hairpin glycosidases,HMMPfam_Glyco_hydro_47	-	no_errors	
ENSG00000236623	0	genome.wustl.edu	37	10	42389451	42389451	+	RNA	SNP	G	G	A	rs12782906	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	42389451	42389451	G	A	SNP	ENSG00000236623	ENST00000423802	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000246919	0	genome.wustl.edu	37	9	35103038	35103038	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35103038	35103038	C	T	SNP	ENSG00000246919	ENST00000500269	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.113	-	-	-	no_errors	
EP300	2033	genome.wustl.edu	37	22	41573268	41573268	+	Silent	SNP	T	T	C	rs116287814	by1000genomes	TCGA-A8-A075-01	TCGA-A8-A075-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	41573268	41573268	T	C	SNP	EP300	NM_001429	human	genbank	57_37b	+1	reviewed	silent	c.5553	p.T1851	0.232	NULL	superfamily_TAZ_finger,HMMPfam_zf-TAZ,HMMSmart_ZnF_TAZ,HMMPfam_KIX,superfamily_KIX,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1,HMMPfam_DUF902,HMMPfam_DUF906,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_Creb_binding,superfamily_Nuc_recept_coact	-		
FAM5C	339479	genome.wustl.edu	37	1	190068153	190068153	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	190068153	190068153	C	T	SNP	FAM5C	NM_199051	human	genbank	57_37b	-1	provisional	silent	c.1296	p.Q432	1.000	NULL	HMMPfam_MACPF,HMMSmart_SM00457	-	no_errors	
FASTKD2	22868	genome.wustl.edu	37	2	207656516	207656516	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	207656516	207656516	G	C	SNP	FASTKD2	NM_001136193	human	genbank	57_37b	+1	reviewed	missense	c.2123	p.S708T	0.005	NULL	HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP	-	no_errors	
GPR108	56927	genome.wustl.edu	37	19	6731903	6731903	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6731903	6731903	C	T	SNP	GPR108	NM_001080452	human	genbank	57_37b	-1	provisional	silent	c.1299	p.K433	1.000	HMMPfam_Lung_7-TM_R	HMMPfam_Lung_7-TM_R	-	no_errors	
H6PD	9563	genome.wustl.edu	37	1	9322166	9322166	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	9322166	9322166	A	C	SNP	H6PD	NM_004285	human	genbank	57_37b	+1	reviewed	missense	c.794	p.Q265P	1.000	superfamily_SSF55347,HMMPfam_G6PD_C	superfamily_NAD(P)-bd,HMMPfam_G6PD_N,PatternScan_G6P_DEHYDROGENASE,superfamily_SSF55347,HMMPfam_G6PD_C,superfamily_SSF100950,HMMPfam_Glucosamine_iso	-	no_errors	
HS3ST5	222537	genome.wustl.edu	37	6	114378677	114378677	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	114378677	114378677	G	A	SNP	HS3ST5	NM_153612	human	genbank	57_37b	-1	validated	missense	c.785	p.P262L	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	no_errors	
IGHV3-6	0	genome.wustl.edu	37	14	106237474	106237474	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	106237474	106237474	G	C	SNP	IGHV3-6	ENST00000454292	human	ensembl	57_37b	-1	known	missense	c.738	p.S246R	0.199	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_C1-set,HMMSmart_SM00407	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC	-	no_errors	
KHDRBS2	202559	genome.wustl.edu	37	6	62390919	62390919	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	62390919	62390919	C	T	SNP	KHDRBS2	NM_152688	human	genbank	57_37b	-1	validated	silent	c.999	p.P333	0.009	NULL	HMMSmart_KH,superfamily_SSF54791,HMMPfam_KH_1	-	no_errors	
KIAA0232	9778	genome.wustl.edu	37	4	6865167	6865167	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	6865167	6865167	G	T	SNP	KIAA0232	NM_001100590	human	genbank	57_37b	+1	validated	missense	c.3058	p.D1020Y	1.000	NULL	NULL	-	no_errors	
KRT86	3892	genome.wustl.edu	37	12	52700002	52700002	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52700002	52700002	C	G	SNP	KRT86	NM_002284	human	genbank	57_37b	+1	reviewed	silent	c.1185	p.S395	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors	
LCP1	3936	genome.wustl.edu	37	13	46701847	46701847	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	46701847	46701847	G	A	SNP	LCP1	NM_002298	human	genbank	57_37b	-1	reviewed	missense	c.1763	p.S588F	1.000	superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2	-	no_errors	
LDLR	3949	genome.wustl.edu	37	19	11213440	11213440	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11213440	11213440	C	T	SNP	LDLR	NM_000527	human	genbank	57_37b	+1	reviewed	silent	c.291	p.N97	0.242	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	-	no_errors	
LOC100130982	0	genome.wustl.edu	37	4	54244418	54244418	+	Missense_Mutation	SNP	C	C	G	rs74553497	byCluster;byFrequency;by1000genomes	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	54244418	54244418	C	G	SNP	LOC100130982	XM_001714018	human	genbank	57_37b	-1	model	missense	c.90	p.Q30H	0.000	NULL	NULL	-		
LOC730110	730110	genome.wustl.edu	37	9	35148532	35148532	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35148532	35148532	G	A	SNP	LOC730110	XM_002342891	human	genbank	57_37b	-1	model	missense	c.650	p.S217F	0.029	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
LRIG3	121227	genome.wustl.edu	37	12	59271267	59271267	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	59271267	59271267	G	C	SNP	LRIG3	NM_153377	human	genbank	57_37b	-1	provisional	missense	c.2451	p.C817W	1.000	NULL	superfamily_RNI-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors	
LRMP	4033	genome.wustl.edu	37	12	25254214	25254214	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	25254214	25254214	G	T	SNP	LRMP	NM_006152	human	genbank	57_37b	+1	reviewed	missense	c.844	p.V282F	0.986	HMMPfam_MRVI1	HMMPfam_MRVI1	-	no_errors	
MACF1	23499	genome.wustl.edu	37	1	39797635	39797654	+	Frame_Shift_Del	DEL	ATAATCTGATTGACCAAGAT	ATAATCTGATTGACCAAGAT	-	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	ATAATCTGATTGACCAAGAT	ATAATCTGATTGACCAAGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	39797635	39797654	ATAATCTGATTGACCAAGAT	-	DEL	MACF1	NM_033044	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.695_714	p.N233fs	0.998:0.988:0.999:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000	superfamily_SSF75399,HMMPfam_Plectin,HMMSmart_PLEC	superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin,HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_GAS2	(deletion:cds_exon[39796941,39802325])	no_errors	
MUC16	94025	genome.wustl.edu	37	19	9057075	9057075	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9057075	9057075	G	C	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	missense	c.30371	p.S10124W	0.000	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors	
MUC16	94025	genome.wustl.edu	37	19	9064046	9064046	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9064046	9064046	G	A	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	silent	c.23400	p.T7800	0.001	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors	
MYO7B	4648	genome.wustl.edu	37	2	128386057	128386057	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	128386057	128386057	G	T	SNP	MYO7B	NM_001080527	human	genbank	57_37b	+1	provisional	missense	c.4493	p.G1498V	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMSmart_SM00139,HMMPfam_MyTH4,HMMSmart_SM00295,superfamily_Second domain of FERM,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMPfam_FERM_M	-	no_errors	
NCKAP1L	3071	genome.wustl.edu	37	12	54917613	54917613	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	54917613	54917613	G	A	SNP	NCKAP1L	NM_005337	human	genbank	57_37b	+1	reviewed	missense	c.2029	p.D677N	1.000	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors	
NCSTN	23385	genome.wustl.edu	37	1	160327968	160327968	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160327968	160327968	C	T	SNP	NCSTN	NM_015331	human	genbank	57_37b	+1	reviewed	silent	c.2037	p.I679	1.000	NULL	superfamily_Zn-dependent exopeptidases,HMMPfam_Nicastrin,PatternScan_WD_REPEATS_1	-	no_errors	
NFU1	27247	genome.wustl.edu	37	2	69642366	69642366	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	69642366	69642366	A	G	SNP	NFU1	NM_001002755	human	genbank	57_37b	-1	validated	silent	c.435	p.F145	1.000	superfamily_NIF_FeS_clus_asmbl_NifU-like_N,HMMPfam_Nfu_N	superfamily_NIF_FeS_clus_asmbl_NifU-like_N,HMMPfam_Nfu_N,HMMPfam_NifU	-	no_errors	
NRP1	8829	genome.wustl.edu	37	10	33502337	33502337	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	33502337	33502337	C	T	SNP	NRP1	NM_003873	human	genbank	57_37b	-1	validated	missense	c.1591	p.D531N	1.000	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1	-	no_errors	
NRP1	8829	genome.wustl.edu	37	10	33545247	33545247	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	33545247	33545247	C	A	SNP	NRP1	NM_003873	human	genbank	57_37b	-1	validated	nonsense	c.811	p.E271*	1.000	NULL	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,superfamily_Galactose-binding domain-like	-	no_errors	
NT5E	4907	genome.wustl.edu	37	6	86201757	86201757	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	86201757	86201757	C	G	SNP	NT5E	NM_002526	human	genbank	57_37b	+1	validated	missense	c.1423	p.L475V	0.999	HMMPfam_5_nucleotid_C,superfamily_5apos-Nucleotdase_C	superfamily_SSF56300,PatternScan_5_NUCLEOTIDASE_1,HMMPfam_Metallophos,PatternScan_5_NUCLEOTIDASE_2,HMMPfam_5_nucleotid_C,superfamily_5apos-Nucleotdase_C	-	no_errors	
PCLO	27445	genome.wustl.edu	37	7	82582602	82582602	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	82582602	82582602	G	A	SNP	PCLO	NM_033026	human	genbank	57_37b	-1	validated	missense	c.7667	p.S2556F	1.000	NULL	superfamily_FYVE/PHD zinc finger,HMMPfam_zf-piccolo,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors	
PDE6C	5146	genome.wustl.edu	37	10	95422824	95422824	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	95422824	95422824	A	T	SNP	PDE6C	NM_006204	human	genbank	57_37b	+1	validated	missense	c.2407	p.S803C	1.000	superfamily_SSF109604,HMMPfam_PDEase_I	superfamily_SSF55781,HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178928079	178928079	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178928079	178928079	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1357	p.E453K	1.000	superfamily_C2_CaLB,HMMPfam_PI3K_C2	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-		
PITRM1	10531	genome.wustl.edu	37	10	3181215	3181215	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	3181215	3181215	T	A	SNP	PITRM1	NM_014889	human	genbank	57_37b	-1	validated	missense	c.2798	p.Q933L	0.120	HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase	superfamily_LuxS/MPP-like metallohydrolase,HMMPfam_Peptidase_M16_C,HMMPfam_M16C_assoc	-	no_errors	
PRAMEF2	65122	genome.wustl.edu	37	1	12921147	12921147	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	12921147	12921147	T	C	SNP	PRAMEF2	NM_023014	human	genbank	57_37b	+1	provisional	missense	c.938	p.L313P	0.029	superfamily_SSF52047	superfamily_SSF52047	-	no_errors	
RBBP6	5930	genome.wustl.edu	37	16	24582488	24582488	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	24582488	24582488	T	G	SNP	RBBP6	NM_006910	human	genbank	57_37b	+1	reviewed	missense	c.4101	p.S1367R	0.047	NULL	HMMPfam_DWNN,superfamily_Retrovirus zinc finger-like domains,HMMPfam_zf-CCHC,HMMSmart_SM00343,superfamily_RING/U-box,HMMPfam_U-box,HMMSmart_SM00184	-	no_errors	
RGS20	8601	genome.wustl.edu	37	8	54866817	54866817	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	54866817	54866817	G	C	SNP	RGS20	NM_170587	human	genbank	57_37b	+1	validated	missense	c.925	p.E309Q	1.000	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	-	no_errors	
RGS4	5999	genome.wustl.edu	37	1	163043400	163043400	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	163043400	163043400	G	C	SNP	RGS4	NM_001102445	human	genbank	57_37b	+1	reviewed	missense	c.657	p.Q219H	1.000	superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS	superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS	-	no_errors	
RNF38	152006	genome.wustl.edu	37	9	36344831	36344831	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	36344831	36344831	A	G	SNP	RNF38	NM_022781	human	genbank	57_37b	-1	reviewed	silent	c.1383	p.T461	1.000	superfamily_RING/U-box	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors	
RUNX2	860	genome.wustl.edu	37	6	45513000	45513000	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	45513000	45513000	C	T	SNP	RUNX2	NM_001024630	human	genbank	57_37b	+1	reviewed	silent	c.1272	p.L424	1.000	NULL	HMMPfam_Runt,superfamily_P53_like_DNA_bnd,HMMPfam_RunxI	-	no_errors	
SARS2	54938	genome.wustl.edu	37	19	39409429	39409429	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39409429	39409429	C	T	SNP	SARS2	NM_017827	human	genbank	57_37b	-1	reviewed	missense	c.784	p.D262N	1.000	superfamily_SSF55681,HMMPfam_tRNA-synt_2b	superfamily_tRNA_binding_arm,HMMPfam_Seryl_tRNA_N,superfamily_SSF55681,HMMPfam_tRNA-synt_2b	-	no_errors	
SBF2	81846	genome.wustl.edu	37	11	10014057	10014057	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	10014057	10014057	T	G	SNP	SBF2	NM_030962	human	genbank	57_37b	-1	reviewed	missense	c.1201	p.N401H	1.000	HMMPfam_dDENN,HMMSmart_SM00801	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
SDK2	54549	genome.wustl.edu	37	17	71410870	71410870	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	71410870	71410870	G	A	SNP	SDK2	NM_001144952	human	genbank	57_37b	-1	provisional	silent	c.2397	p.H799	0.682	superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
SEMA4F	10505	genome.wustl.edu	37	2	74902498	74902498	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74902498	74902498	C	G	SNP	SEMA4F	NM_004263	human	genbank	57_37b	+1	provisional	silent	c.1359	p.L453	0.995	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat	-	no_errors	
SF3B1	23451	genome.wustl.edu	37	2	198274677	198274677	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	198274677	198274677	C	A	SNP	SF3B1	NM_012433	human	genbank	57_37b	-1	reviewed	nonsense	c.721	p.G241*	1.000	NULL	HMMPfam_SF3b1,superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
SHC3	53358	genome.wustl.edu	37	9	91660705	91660705	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	91660705	91660705	C	T	SNP	SHC3	NM_016848	human	genbank	57_37b	-1	validated	missense	c.1157	p.G386E	1.000	NULL	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors	
SHROOM2	357	genome.wustl.edu	37	X	9863794	9863794	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	9863794	9863794	G	A	SNP	SHROOM2	NM_001649	human	genbank	57_37b	+1	reviewed	missense	c.1846	p.V616M	0.007	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_ASD1,HMMPfam_ASD2	-	no_errors	
SLC5A4	6527	genome.wustl.edu	37	22	32631034	32631034	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	32631034	32631034	C	T	SNP	SLC5A4	NM_014227	human	genbank	57_37b	-1	validated	silent	c.711	p.V237	1.000	HMMPfam_SSF	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2	-	no_errors	
SMC2	10592	genome.wustl.edu	37	9	106887243	106887243	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	106887243	106887243	G	A	SNP	SMC2	NM_001042550	human	genbank	57_37b	+1	validated	missense	c.2308	p.E770K	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N,superfamily_Smc hinge domain,HMMPfam_SMC_hinge,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
SPEM1	374768	genome.wustl.edu	37	17	7324627	7324627	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7324627	7324627	T	C	SNP	SPEM1	NM_199339	human	genbank	57_37b	+1	provisional	silent	c.633	p.P211	0.012	NULL	NULL	-	no_errors	
STAT6	6778	genome.wustl.edu	37	12	57500358	57500358	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57500358	57500358	G	A	SNP	STAT6	NM_003153	human	genbank	57_37b	-1	reviewed	silent	c.484	p.L162	0.984	HMMPfam_STAT_alpha,superfamily_STAT	superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_int,HMMPfam_STAT_alpha,superfamily_STAT,HMMPfam_STAT_bind,superfamily_p53-like transcription factors,superfamily_SH2 domain,HMMPfam_SH2,HMMSmart_SM00252	-	no_errors	
STOML2	30968	genome.wustl.edu	37	9	35101259	35101259	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35101259	35101259	C	T	SNP	STOML2	NM_013442	human	genbank	57_37b	-1	provisional	silent	c.597	p.R199	1.000	HMMPfam_Band_7	HMMSmart_PHB,HMMPfam_Band_7	-	no_errors	
SYCP2L	221711	genome.wustl.edu	37	6	10926595	10926595	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	10926595	10926595	C	T	SNP	SYCP2L	NM_001040274	human	genbank	57_37b	+1	validated	silent	c.1242	p.I414	0.000	NULL	NULL	-	no_errors	
TMEM70	54968	genome.wustl.edu	37	8	74893669	74893669	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	74893669	74893669	A	G	SNP	TMEM70	NM_017866	human	genbank	57_37b	+1	reviewed	missense	c.596	p.D199G	1.000	HMMPfam_DUF1301	HMMPfam_DUF1301	-	no_errors	
TMEM74	157753	genome.wustl.edu	37	8	109796543	109796543	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	109796543	109796543	C	T	SNP	TMEM74	NM_153015	human	genbank	57_37b	-1	provisional	missense	c.785	p.R262Q	0.978	NULL	NULL	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578370	7578370	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578370	7578370	C	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	splice_site	c.559+1	e4+1	1.000	-	-	-	no_errors	
TRPC3	7222	genome.wustl.edu	37	4	122853549	122853549	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	122853549	122853549	G	A	SNP	TRPC3	NM_001130698	human	genbank	57_37b	-1	validated	silent	c.864	p.I288	1.000	HMMPfam_TRP_2	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_TRP_2,HMMPfam_Ion_trans	-	no_errors	
WDR93	56964	genome.wustl.edu	37	15	90258281	90258281	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	90258281	90258281	C	T	SNP	WDR93	NM_020212	human	genbank	57_37b	+1	provisional	silent	c.711	p.P237	0.014	NULL	superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase,PatternScan_WD_REPEATS_1	-	no_errors	
ZNF434	54925	genome.wustl.edu	37	16	3432953	3432953	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3432953	3432953	G	A	SNP	ZNF434	NM_017810	human	genbank	57_37b	-1	provisional	missense	c.1357	p.H453Y	0.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF501	115560	genome.wustl.edu	37	3	44776563	44776572	+	Frame_Shift_Del	DEL	TTTATAAGTG	TTTATAAGTG	-	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	TTTATAAGTG	TTTATAAGTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	44776563	44776572	TTTATAAGTG	-	DEL	ZNF501	NM_145044	human	genbank	57_37b	+1	validated	frame_shift_del	c.650_659	p.Y218fs	0.282:0.160:0.171:0.105:0.069:0.077:0.069:0.067:0.894:0.921	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[44775914,44776729])	no_errors	
ZNF642	339559	genome.wustl.edu	37	1	40947462	40947462	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	40947462	40947462	T	A	SNP	ZNF642	NM_198494	human	genbank	57_37b	+1	validated	missense	c.155	p.V52E	0.002	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZSCAN20	7579	genome.wustl.edu	37	1	33956633	33956633	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A075-01	TCGA-A8-A075-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	33956633	33956633	G	T	SNP	ZSCAN20	NM_145238	human	genbank	57_37b	+1	validated	missense	c.775	p.V259F	0.984	NULL	HMMPfam_SCAN,HMMSmart_SM00431,HMMSmart_SM00717,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
