Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AFF3	3899	genome.wustl.edu	37	2	100623894	100623894	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	100623894	100623894	C	T	SNP	AFF3	NM_001025108	human	genbank	57_37b	-1	reviewed	missense	c.278	p.R93Q	1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors	
AQP6	363	genome.wustl.edu	37	12	50368232	50368232	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	50368232	50368232	T	A	SNP	AQP6	NM_001652	human	genbank	57_37b	+1	reviewed	silent	c.528	p.I176	0.975	superfamily_MIP,HMMPfam_MIP	superfamily_MIP,HMMPfam_MIP,PatternScan_MIP	-	no_errors	
ATG4D	84971	genome.wustl.edu	37	19	10663675	10663675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10663675	10663675	C	T	SNP	ATG4D	NM_032885	human	genbank	57_37b	+1	reviewed	missense	c.1357	p.R453W	0.130	NULL	HMMPfam_Peptidase_C54	-	no_errors	
ATM	472	genome.wustl.edu	37	11	108164150	108164151	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	108164150	108164151	GC	-	DEL	ATM	NM_000051	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.4722_4723	p.R1575fs	1.000:1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	(deletion:cds_exon[108164040,108164204])	no_errors	
ATM	472	genome.wustl.edu	37	11	108164152	108164152	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	108164152	108164152	G	T	SNP	ATM	NM_000051	human	genbank	57_37b	+1	reviewed	missense	c.4724	p.R1575L	0.997	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors	
ATP10A	57194	genome.wustl.edu	37	15	25925049	25925049	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	25925049	25925049	C	A	SNP	ATP10A	NM_024490	human	genbank	57_37b	-1	reviewed	missense	c.3939	p.K1313N	0.002	NULL	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Hydrolase_3	-	no_errors	
ATP8A1	10396	genome.wustl.edu	37	4	42416696	42416696	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	42416696	42416696	C	A	SNP	ATP8A1	NM_006095	human	genbank	57_37b	-1	reviewed	missense	c.3345	p.K1115N	1.000	NULL	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors	
C13orf33	84935	genome.wustl.edu	37	13	31495228	31495228	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	31495228	31495228	A	G	SNP	C13orf33	NM_032849	human	genbank	57_37b	+1	validated	missense	c.466	p.I156V	1.000	NULL	NULL	-	no_errors	
C14orf159	80017	genome.wustl.edu	37	14	91639748	91639748	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	91639748	91639748	G	A	SNP	C14orf159	NM_001102369	human	genbank	57_37b	+1	validated	splice_site	c.556+1	e4+1	0.000	-	-	-	no_errors	
C17orf102	0	genome.wustl.edu	37	17	32905986	32905986	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	32905986	32905986	C	T	SNP	C17orf102	NM_207454	human	genbank	57_37b	-1	validated	missense	c.314	p.R105H	0.000	NULL	NULL	-	no_errors	
C20orf12	55184	genome.wustl.edu	37	20	18395988	18395988	+	Missense_Mutation	SNP	C	C	T	rs6035037	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	18395988	18395988	C	T	SNP	C20orf12	NM_001099407	human	genbank	57_37b	-1	validated	missense	c.1060	p.G354S	0.999	NULL	HMMSmart_ZnF_RBZ,HMMSmart_ANK,superfamily_ANK,HMMPfam_Ank	-		
C3orf24	115795	genome.wustl.edu	37	3	10146188	10146188	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	10146188	10146188	G	A	SNP	C3orf24	NM_173472	human	genbank	57_37b	-1	validated	missense	c.271	p.P91S	1.000	NULL	NULL	-	no_errors	
C6orf105	84830	genome.wustl.edu	37	6	11768480	11768480	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	11768480	11768480	A	G	SNP	C6orf105	NM_001143948	human	genbank	57_37b	-1	validated	splice_site	c.342+2	e3+2	1.000	-	-	-	no_errors	
C9orf7	11094	genome.wustl.edu	37	9	136333148	136333148	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	136333148	136333148	A	T	SNP	C9orf7	NM_017586	human	genbank	57_37b	+1	validated	missense	c.426	p.K142N	0.878	HMMPfam_Cg6151-P	HMMPfam_Cg6151-P	-	no_errors	
CD302	9936	genome.wustl.edu	37	2	160628389	160628391	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	160628389	160628391	TTC	-	DEL	CD302	NM_014880	human	genbank	57_37b	-1	validated	in_frame_del	c.672_670	p.E224in_frame_del	1.000:1.000:1.000	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	(deletion:cds_exon[160628362,160628564])	no_errors	
CELA2A	63036	genome.wustl.edu	37	1	15793991	15793991	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	15793991	15793991	C	T	SNP	CELA2A	NM_033440	human	genbank	57_37b	+1	reviewed	silent	c.750	p.S250	0.987	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
CHRM2	1129	genome.wustl.edu	37	7	136699781	136699781	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	136699781	136699781	G	A	SNP	CHRM2	NM_000739	human	genbank	57_37b	+1	reviewed	missense	c.169	p.V57I	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
CMPK2	129607	genome.wustl.edu	37	2	6990088	6990088	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	6990088	6990088	G	A	SNP	CMPK2	NM_207315	human	genbank	57_37b	-1	validated	nonsense	c.1243	p.Q415*	0.838	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Thymidylate_kin	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Thymidylate_kin	-	no_errors	
CTNNA2	1496	genome.wustl.edu	37	2	80136769	80136769	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	80136769	80136769	C	T	SNP	CTNNA2	NM_004389	human	genbank	57_37b	+1	validated	missense	c.902	p.P301L	1.000	HMMPfam_Vinculin	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin,PatternScan_VINCULIN_1	-	no_errors	
DMBX1	127343	genome.wustl.edu	37	1	46976927	46976927	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	46976927	46976927	G	T	SNP	DMBX1	NM_147192	human	genbank	57_37b	+1	reviewed	silent	c.669	p.L223	0.973	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR	-	no_errors	
DTX1	1840	genome.wustl.edu	37	12	113532684	113532684	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	113532684	113532684	C	T	SNP	DTX1	NM_004416	human	genbank	57_37b	+1	reviewed	missense	c.1318	p.R440C	1.000	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	PatternScan_ZF_RING_1,HMMPfam_WWE,HMMSmart_WWE,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	-	no_errors	
ENSG00000222777	0	genome.wustl.edu	37	17	37702410	37702410	+	RNA	SNP	C	C	A	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37702410	37702410	C	A	SNP	ENSG00000222777	ENST00000410845	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.154	-	-	-	no_errors	
ENSG00000245029	0	genome.wustl.edu	37	1	16889820	16889820	+	RNA	SNP	C	C	T	rs78775795	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16889820	16889820	C	T	SNP	ENSG00000245029	ENST00000500210	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.025	-	-	-		
FABP1	2168	genome.wustl.edu	37	2	88425708	88425708	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	88425708	88425708	C	T	SNP	FABP1	NM_001443	human	genbank	57_37b	-1	reviewed	missense	c.227	p.G76E	1.000	superfamily_Lipocalins,HMMPfam_Lipocalin	superfamily_Lipocalins,HMMPfam_Lipocalin,PatternScan_FABP	-	no_errors	
GLI1	2735	genome.wustl.edu	37	12	57859576	57859576	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57859576	57859576	C	T	SNP	GLI1	NM_005269	human	genbank	57_37b	+1	reviewed	silent	c.630	p.P210	0.994	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
GRM6	2916	genome.wustl.edu	37	5	178408823	178408823	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	178408823	178408823	G	T	SNP	GRM6	NM_000843	human	genbank	57_37b	-1	reviewed	silent	c.2469	p.S823	1.000	HMMPfam_7tm_3	superfamily_SSF53822,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors	
HADHA	3030	genome.wustl.edu	37	2	26417472	26417472	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	26417472	26417472	C	T	SNP	HADHA	NM_000182	human	genbank	57_37b	-1	reviewed	silent	c.1656	p.A552	0.629	PatternScan_3HCDH,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,HMMPfam_3HCDH	superfamily_ClpP/crotonase,HMMPfam_ECH,PatternScan_ENOYL_COA_HYDRATASE,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_3HCDH_N,PatternScan_3HCDH,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,HMMPfam_3HCDH	-	no_errors	
IL16	3603	genome.wustl.edu	37	15	81517749	81517749	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	81517749	81517749	G	A	SNP	IL16	NM_172217	human	genbank	57_37b	+1	reviewed	silent	c.9	p.S3	0.020	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
ITPKB	3707	genome.wustl.edu	37	1	226825450	226825450	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	226825450	226825450	A	G	SNP	ITPKB	NM_002221	human	genbank	57_37b	-1	reviewed	missense	c.2555	p.I852T	0.053	HMMPfam_IPK,superfamily_SAICAR synthase-like	HMMPfam_IPK,superfamily_SAICAR synthase-like	-	no_errors	
KCNK5	8645	genome.wustl.edu	37	6	39158914	39158914	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	39158914	39158914	C	T	SNP	KCNK5	NM_003740	human	genbank	57_37b	-1	reviewed	missense	c.1252	p.A418T	0.873	NULL	superfamily_SSF81324,HMMPfam_Ion_trans_2	-	no_errors	
KDM4C	23081	genome.wustl.edu	37	9	6814672	6814672	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	6814672	6814672	G	A	SNP	KDM4C	NM_015061	human	genbank	57_37b	+1	reviewed	missense	c.362	p.R121H	1.000	NULL	HMMSmart_SM00545,HMMPfam_JmjN,HMMSmart_SM00558,HMMPfam_JmjC,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00333,superfamily_Tudor/PWWP/MBT	-	no_errors	
KPRP	448834	genome.wustl.edu	37	1	152733785	152733785	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152733785	152733785	C	A	SNP	KPRP	NM_001025231	human	genbank	57_37b	+1	provisional	missense	c.1721	p.A574E	0.000	NULL	NULL	-	no_errors	
L3MBTL4	91133	genome.wustl.edu	37	18	6080916	6080917	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	6080916	6080917	-	T	INS	L3MBTL4	NM_173464	human	genbank	57_37b	-1	validated	frame_shift_ins	c.1408_1407	p.G469fs	1.000:1.000	NULL	superfamily_SSF63748,HMMSmart_MBT,HMMPfam_MBT,superfamily_SSF103637,HMMPfam_zf-C2HC,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors	
LOC100287354	0	genome.wustl.edu	37	9	68455095	68455095	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	68455095	68455095	G	C	SNP	LOC100287354	XM_002344262	human	genbank	57_37b	+1	model	missense	c.214	p.G72R	0.000	NULL	PatternScan_COX1_CUB	-	no_errors	
MLL	4297	genome.wustl.edu	37	11	118350902	118350902	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118350902	118350902	C	T	SNP	MLL	NM_005933	human	genbank	57_37b	+1	validated	nonsense	c.3583	p.Q1195*	1.000	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMPfam_zf-CXXC,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,PatternScan_RECR,HMMSmart_SM00297,superfamily_Bromodomain,HMMPfam_FYRN,HMMSmart_SM00541,PatternScan_EF_HAND_1,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors	
MRPS35	60488	genome.wustl.edu	37	12	27890496	27890496	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	27890496	27890496	C	T	SNP	MRPS35	NM_021821	human	genbank	57_37b	+1	reviewed	silent	c.657	p.Y219	0.950	HMMPfam_MRP-S28	HMMPfam_MRP-S28	-	no_errors	
NR1D1	9572	genome.wustl.edu	37	17	38251892	38251892	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38251892	38251892	A	T	SNP	NR1D1	NM_021724	human	genbank	57_37b	-1	provisional	missense	c.1053	p.H351Q	0.991	superfamily_Str_ncl_receptor	HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors	
NRIP1	8204	genome.wustl.edu	37	21	16338239	16338239	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	16338239	16338239	G	A	SNP	NRIP1	NM_003489	human	genbank	57_37b	-1	reviewed	missense	c.2275	p.P759S	1.000	NULL	NULL	-	no_errors	
ODZ1	10178	genome.wustl.edu	37	X	123680767	123680767	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	123680767	123680767	C	T	SNP	ODZ1	NM_014253	human	genbank	57_37b	-1	reviewed	missense	c.2608	p.D870N	1.000	NULL	HMMPfam_Ten_N,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_SSF57196,superfamily_SSF101898,HMMPfam_NHL,superfamily_N2O_reductase_N,HMMPfam_RHS_repeat	-	no_errors	
OR51G2	81282	genome.wustl.edu	37	11	4936757	4936757	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4936757	4936757	C	T	SNP	OR51G2	NM_001005238	human	genbank	57_37b	-1	provisional	missense	c.137	p.G46D	0.684	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
P2RX3	5024	genome.wustl.edu	37	11	57114069	57114069	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	57114069	57114069	G	C	SNP	P2RX3	NM_002559	human	genbank	57_37b	+1	reviewed	missense	c.171	p.E57D	1.000	HMMPfam_P2X_receptor	HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR	-	no_errors	
PAFAH1B1	5048	genome.wustl.edu	37	17	2575983	2575983	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	2575983	2575983	G	T	SNP	PAFAH1B1	NM_000430	human	genbank	57_37b	+1	reviewed	missense	c.603	p.M201I	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_Lissencephaly-1 protein (Lis-1 PAF-AH alpha) N-terminal domain,HMMSmart_SM00667,HMMPfam_LisH,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
PPEF1	5475	genome.wustl.edu	37	X	18768068	18768068	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	18768068	18768068	C	T	SNP	PPEF1	NM_006240	human	genbank	57_37b	+1	reviewed	nonsense	c.394	p.Q132*	0.747	HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases	HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE,HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand,PatternScan_EF_HAND_1	-	no_errors	
PSMD4	5710	genome.wustl.edu	37	1	151238994	151238994	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151238994	151238994	A	G	SNP	PSMD4	NM_002810	human	genbank	57_37b	+1	reviewed	splice_site	c.896-2	e9-2	1.000	-	-	-	no_errors	
PSMD5	5711	genome.wustl.edu	37	9	123593626	123593626	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	123593626	123593626	G	A	SNP	PSMD5	NM_005047	human	genbank	57_37b	-1	reviewed	nonsense	c.544	p.R182*	1.000	HMMPfam_Proteasom_PSMB,superfamily_ARM-type_fold	HMMPfam_Proteasom_PSMB,superfamily_ARM-type_fold	-	no_errors	
RAD21	5885	genome.wustl.edu	37	8	117875465	117875466	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	117875465	117875466	AG	-	DEL	RAD21	NM_006265	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.178_177	p.L60fs	1.000:0.978	HMMPfam_Rad21_Rec8_N	HMMPfam_Rad21_Rec8_N,HMMPfam_Rad21_Rec8	(deletion:cds_exon[117875369,117875498])	no_errors	
RYR3	6263	genome.wustl.edu	37	15	34131109	34131109	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	34131109	34131109	G	T	SNP	RYR3	NM_001036	human	genbank	57_37b	+1	validated	missense	c.12928	p.D4310Y	0.640	HMMPfam_RR_TM4-6	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,HMMPfam_efhand,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SERPINB7	8710	genome.wustl.edu	37	18	61471507	61471507	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	61471507	61471507	T	A	SNP	SERPINB7	NM_001040147	human	genbank	57_37b	+1	validated	missense	c.781	p.W261R	0.992	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN,PatternScan_SERPIN	-	no_errors	
SETX	23064	genome.wustl.edu	37	9	135211712	135211712	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	135211712	135211712	T	C	SNP	SETX	NM_015046	human	genbank	57_37b	-1	reviewed	missense	c.689	p.D230G	0.996	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
SIGLEC9	27180	genome.wustl.edu	37	19	51629052	51629052	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51629052	51629052	A	G	SNP	SIGLEC9	NM_014441	human	genbank	57_37b	+1	provisional	missense	c.620	p.H207R	0.668	superfamily_SSF48726,HMMPfam_ig	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_ig	-	no_errors	
SLC15A4	121260	genome.wustl.edu	37	12	129285502	129285502	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	129285502	129285502	C	A	SNP	SLC15A4	NM_145648	human	genbank	57_37b	-1	validated	missense	c.1311	p.Q437H	1.000	superfamily_MFS general substrate transporter,HMMPfam_PTR2	superfamily_MFS general substrate transporter,HMMPfam_PTR2,PatternScan_PTR2_2,PatternScan_MULTICOPPER_OXIDASE1	-	no_errors	
SLC20A1	6574	genome.wustl.edu	37	2	113405016	113405016	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	113405016	113405016	C	T	SNP	SLC20A1	NM_005415	human	genbank	57_37b	+1	provisional	silent	c.450	p.V150	1.000	HMMPfam_PHO4	HMMPfam_PHO4	-	no_errors	
STIM2	57620	genome.wustl.edu	37	4	27009202	27009202	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	27009202	27009202	C	T	SNP	STIM2	NM_020860	human	genbank	57_37b	+1	reviewed	silent	c.1290	p.S430	1.000	NULL	superfamily_SAM/Pointed domain,HMMPfam_SAM_2	-	no_errors	
STOX2	56977	genome.wustl.edu	37	4	184932355	184932355	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	184932355	184932355	G	T	SNP	STOX2	NM_020225	human	genbank	57_37b	+1	provisional	missense	c.2364	p.K788N	0.231	NULL	HMMPfam_Stork_head	-	no_errors	
TP63	8626	genome.wustl.edu	37	3	189582203	189582203	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	189582203	189582203	C	T	SNP	TP63	NM_003722	human	genbank	57_37b	+1	reviewed	silent	c.762	p.N254	0.236	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_SAM/Pointed domain	-	no_errors	
TREML2	79865	genome.wustl.edu	37	6	41162312	41162312	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	41162312	41162312	G	A	SNP	TREML2	NM_024807	human	genbank	57_37b	-1	validated	silent	c.636	p.T212	0.003	NULL	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG	-	no_errors	
WDR66	144406	genome.wustl.edu	37	12	122437780	122437780	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01	TCGA-A8-A07P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	122437780	122437780	C	T	SNP	WDR66	NM_144668	human	genbank	57_37b	+1	validated	silent	c.3165	p.L1055	0.444	superfamily_EF-hand	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,superfamily_EF-hand	-	no_errors	
