Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ANKS1A	23294	genome.wustl.edu	37	6	35046420	35046420	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	35046420	35046420	G	A	SNP	ANKS1A	NM_015245	human	genbank	57_37b	+1	validated	missense	c.2270	p.R757H	0.953	superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	HMMPfam_Ank,superfamily_ANK,HMMSmart_ANK,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1,superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID	-	no_errors	
APOBEC1	339	genome.wustl.edu	37	12	7805264	7805264	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	7805264	7805264	G	A	SNP	APOBEC1	NM_001644	human	genbank	57_37b	-1	reviewed	missense	c.212	p.T71M	0.000	HMMPfam_APOBEC_N,superfamily_Cytidine_deaminase-like,PatternScan_CYT_DCMP_DEAMINASES	HMMPfam_APOBEC_N,superfamily_Cytidine_deaminase-like,PatternScan_CYT_DCMP_DEAMINASES,HMMPfam_APOBEC_C	-	no_errors	
ARAP3	64411	genome.wustl.edu	37	5	141052170	141052170	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	141052170	141052170	C	T	SNP	ARAP3	NM_022481	human	genbank	57_37b	-1	reviewed	missense	c.1334	p.R445Q	1.000	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP,HMMPfam_RA	-	no_errors	
ATP11C	286410	genome.wustl.edu	37	X	138869362	138869362	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	138869362	138869362	C	G	SNP	ATP11C	NM_173694	human	genbank	57_37b	-1	validated	missense	c.1571	p.R524T	0.087	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors	
BAI3	577	genome.wustl.edu	37	6	69758178	69758178	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	69758178	69758178	G	T	SNP	BAI3	NM_001704	human	genbank	57_37b	+1	reviewed	missense	c.2209	p.D737Y	1.000	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
BIRC6	57448	genome.wustl.edu	37	2	32713706	32713706	+	Missense_Mutation	SNP	A	A	T	rs2366894	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A081-01	TCGA-A8-A081-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	32713706	32713706	A	T	SNP	BIRC6	NM_016252	human	genbank	57_37b	+1	reviewed	missense	c.8020	p.T2674S	0.952	NULL	superfamily_Inhibitor of apoptosis (IAP) repeat,HMMSmart_SM00238,HMMPfam_BIR,superfamily_Galactose-binding domain-like,superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	-		
BIRC6	57448	genome.wustl.edu	37	2	32836514	32836514	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	32836514	32836514	G	T	SNP	BIRC6	NM_016252	human	genbank	57_37b	+1	reviewed	splice_site	c.14260-1	e73-1	1.000	-	-	-	no_errors	
CACNA1B	774	genome.wustl.edu	37	9	140846819	140846819	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140846819	140846819	G	A	SNP	CACNA1B	NM_000718	human	genbank	57_37b	+1	validated	missense	c.1060	p.V354M	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors	
CAMKV	79012	genome.wustl.edu	37	3	49899764	49899764	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49899764	49899764	C	G	SNP	CAMKV	ENST00000467248	human	ensembl	57_37b	-1	known	splice_site	c.1+1	e0+1	1.000	-	-	-	no_errors	
CAPN2	824	genome.wustl.edu	37	1	223940644	223940644	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	223940644	223940644	G	A	SNP	CAPN2	NM_001748	human	genbank	57_37b	+1	reviewed	missense	c.1121	p.C374Y	1.000	HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III)	superfamily_Cysteine proteinases,HMMSmart_SM00230,HMMPfam_Peptidase_C2,PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III),superfamily_EF-hand,PatternScan_EF_HAND_1	-	no_errors	
CAPN2	824	genome.wustl.edu	37	1	223959610	223959610	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	223959610	223959610	G	A	SNP	CAPN2	NM_001748	human	genbank	57_37b	+1	reviewed	missense	c.2003	p.R668Q	0.994	superfamily_EF-hand	PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Peptidase_C2,HMMPfam_Calpain_III,HMMSmart_SM00230,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III),PatternScan_EF_HAND_1,superfamily_EF-hand,superfamily_Cysteine proteinases	-	no_errors	
CCDC123	84902	genome.wustl.edu	37	19	33390801	33390801	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	33390801	33390801	C	T	SNP	CCDC123	NM_032816	human	genbank	57_37b	-1	validated	missense	c.1837	p.E613K	1.000	NULL	NULL	-	no_errors	
CCDC57	284001	genome.wustl.edu	37	17	80085633	80085633	+	Missense_Mutation	SNP	A	A	G	rs11077969	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A081-01	TCGA-A8-A081-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80085633	80085633	A	G	SNP	CCDC57	NM_198082	human	genbank	57_37b	-1	validated	missense	c.2498	p.M833T	0.065	NULL	NULL	-		
CCDC87	55231	genome.wustl.edu	37	11	66358013	66358013	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66358013	66358013	C	T	SNP	CCDC87	NM_018219	human	genbank	57_37b	-1	validated	missense	c.2474	p.R825Q	0.614	NULL	NULL	-	no_errors	
CD226	10666	genome.wustl.edu	37	18	67614147	67614147	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	67614147	67614147	T	C	SNP	CD226	NM_006566	human	genbank	57_37b	-1	reviewed	missense	c.205	p.M69V	0.000	HMMPfam_V-set,superfamily_SSF48726	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGc2	-	no_errors	
CDC25B	994	genome.wustl.edu	37	20	3785499	3785499	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	3785499	3785499	T	C	SNP	CDC25B	NM_021873	human	genbank	57_37b	+1	reviewed	missense	c.1634	p.M545T	1.000	superfamily_Rhodanese/Cell cycle control phosphatase	HMMPfam_M-inducer_phosp,superfamily_Rhodanese/Cell cycle control phosphatase,HMMSmart_SM00450,HMMPfam_Rhodanese	-	no_errors	
CSMD3	114788	genome.wustl.edu	37	8	113358357	113358357	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	113358357	113358357	G	A	SNP	CSMD3	NM_198123	human	genbank	57_37b	-1	validated	silent	c.6411	p.C2137	1.000	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors	
CYB5R2	51700	genome.wustl.edu	37	11	7687778	7687778	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	7687778	7687778	C	T	SNP	CYB5R2	NM_016229	human	genbank	57_37b	-1	validated	missense	c.562	p.E188K	1.000	superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1	superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1	-	no_errors	
DLGAP3	58512	genome.wustl.edu	37	1	35350653	35350653	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	35350653	35350653	G	T	SNP	DLGAP3	NM_001080418	human	genbank	57_37b	-1	provisional	silent	c.1926	p.I642	1.000	HMMPfam_GKAP	HMMPfam_GKAP	-	no_errors	
DNAH10	196385	genome.wustl.edu	37	12	124403277	124403277	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	124403277	124403277	C	T	SNP	DNAH10	NM_207437	human	genbank	57_37b	+1	validated	missense	c.10933	p.R3645W	1.000	NULL	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
DSG3	1830	genome.wustl.edu	37	18	29055687	29055687	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	29055687	29055687	G	A	SNP	DSG3	NM_001944	human	genbank	57_37b	+1	reviewed	missense	c.2464	p.D822N	0.025	NULL	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin,PatternScan_CADHERIN_1	-	no_errors	
EMX2OS	196047	genome.wustl.edu	37	10	119245865	119245866	+	RNA	INS	-	-	TGAA	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	119245865	119245866	-	TGAA	INS	EMX2OS	NR_002791	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	
ENSG00000099251	0	genome.wustl.edu	37	10	38650211	38650211	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	38650211	38650211	G	A	SNP	ENSG00000099251	ENST00000319742	human	ensembl	57_37b	+1	known	missense	c.243	p.M81I	0.125	HMMPfam_adh_short	superfamily_NAD(P)-bd,HMMPfam_adh_short	-	no_errors	
ENSG00000099251	0	genome.wustl.edu	37	10	38651187	38651187	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	38651187	38651187	G	C	SNP	ENSG00000099251	ENST00000356314	human	ensembl	57_37b	+1	known	missense	c.253	p.D85H	1.000	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	-	no_errors	
ENSG00000211459	0	genome.wustl.edu	37	MT	1550	1550	+	RNA	SNP	A	G	G	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	MT	1550	1550	A	G	SNP	ENSG00000211459	ENST00000389680	human	ensembl	57_37b	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	
ENSG00000211459	0	genome.wustl.edu	37	MT	1554	1554	+	RNA	SNP	G	A	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	MT	1554	1554	G	A	SNP	ENSG00000211459	ENST00000389680	human	ensembl	57_37b	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	
ENSG00000245557	0	genome.wustl.edu	37	6	136582194	136582195	+	RNA	INS	-	-	AAA	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	136582194	136582195	-	AAA	INS	ENSG00000245557	ENST00000499179	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.920:0.995	-	-	-	no_errors	
ERCC6L	54821	genome.wustl.edu	37	X	71426034	71426034	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	71426034	71426034	A	T	SNP	ERCC6L	NM_017669	human	genbank	57_37b	-1	validated	silent	c.2583	p.P861	0.001	NULL	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors	
ERN1	2081	genome.wustl.edu	37	17	62137922	62137922	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	62137922	62137922	C	T	SNP	ERN1	NM_001433	human	genbank	57_37b	-1	reviewed	silent	c.1113	p.A371	0.373	NULL	superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,HMMPfam_PQQ,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,HMMSmart_SM00580	-	no_errors	
ESRP1	54845	genome.wustl.edu	37	8	95690588	95690588	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	95690588	95690588	G	T	SNP	ESRP1	NM_017697	human	genbank	57_37b	+1	validated	silent	c.1809	p.A603	0.002	NULL	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1	-	no_errors	
FRMPD3	84443	genome.wustl.edu	37	X	106845785	106845785	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	106845785	106845785	G	C	SNP	FRMPD3	XM_042978	human	genbank	57_37b	+1	model	missense	c.4615	p.A1539P	0.971	NULL	PatternScan_FERM_1,PatternScan_FERM_2,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M	-	no_errors	
GABRQ	55879	genome.wustl.edu	37	X	151815455	151815455	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	151815455	151815455	G	A	SNP	GABRQ	NM_018558	human	genbank	57_37b	+1	reviewed	missense	c.353	p.R118H	1.000	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors	
GEMIN5	25929	genome.wustl.edu	37	5	154306969	154306969	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	154306969	154306969	T	C	SNP	GEMIN5	NM_015465	human	genbank	57_37b	-1	validated	silent	c.1056	p.L352	0.990	superfamily_WD40 repeat-like,HMMSmart_SM00320	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
GPR6	2830	genome.wustl.edu	37	6	110301379	110301379	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	110301379	110301379	G	A	SNP	GPR6	NM_005284	human	genbank	57_37b	+1	validated	missense	c.1064	p.R355H	1.000	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
GTF2IRD2	84163	genome.wustl.edu	37	7	74237282	74237282	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	74237282	74237282	G	A	SNP	GTF2IRD2	NM_173537	human	genbank	57_37b	-1	validated	nonsense	c.412	p.R138*	0.232	HMMPfam_GTF2I	HMMPfam_GTF2I	-	no_errors	
HSD3B2	3284	genome.wustl.edu	37	1	119962135	119962135	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	119962135	119962135	C	G	SNP	HSD3B2	NM_000198	human	genbank	57_37b	+1	reviewed	missense	c.237	p.I79M	0.946	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_3Beta_HSD	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_3Beta_HSD	-	no_errors	
INPP5B	3633	genome.wustl.edu	37	1	38341331	38341331	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	38341331	38341331	G	C	SNP	INPP5B	NM_005540	human	genbank	57_37b	-1	reviewed	missense	c.1735	p.L579V	1.000	superfamily_DNase I-like	PatternScan_LECTIN_LEGUME_BETA,superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
ISLR	3671	genome.wustl.edu	37	15	74467792	74467792	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	74467792	74467792	C	T	SNP	ISLR	NM_005545	human	genbank	57_37b	+1	validated	missense	c.593	p.T198M	0.936	superfamily_SSF52058,HMMSmart_LRRCT	HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	-	no_errors	
ITGA4	3676	genome.wustl.edu	37	2	182386929	182386929	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	182386929	182386929	A	G	SNP	ITGA4	NM_000885	human	genbank	57_37b	+1	reviewed	missense	c.1934	p.N645S	1.000	HMMPfam_Integrin_alpha2,superfamily_Integrin domains	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors	
ITGAV	3685	genome.wustl.edu	37	2	187520972	187520972	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	187520972	187520972	A	T	SNP	ITGAV	NM_002210	human	genbank	57_37b	+1	reviewed	splice_site	c.1565-2	e17-2	1.000	-	-	-	no_errors	
ITGAV	3685	genome.wustl.edu	37	2	187521035	187521035	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	187521035	187521035	G	T	SNP	ITGAV	NM_002210	human	genbank	57_37b	+1	reviewed	silent	c.1626	p.L542	0.241	HMMPfam_Integrin_alpha2,superfamily_Integrin domains	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors	
ITGAV	3685	genome.wustl.edu	37	2	187540353	187540353	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	187540353	187540353	T	G	SNP	ITGAV	NM_002210	human	genbank	57_37b	+1	reviewed	missense	c.2729	p.L910W	1.000	HMMPfam_Integrin_alpha2,superfamily_Integrin domains	HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_SM00191,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_Integrin domains,superfamily_Integrin alpha N-terminal domain	-	no_errors	
KRT19	3880	genome.wustl.edu	37	17	39681142	39681143	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39681142	39681143	-	G	INS	KRT19	NM_002276	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.613_612	p.E204fs	0.995:0.004	HMMPfam_Filament,superfamily_Prefoldin	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors	
LOC100289027	0	genome.wustl.edu	37	9	45363680	45363680	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	45363680	45363680	C	T	SNP	LOC100289027	XM_002344254	human	genbank	57_37b	+1	model	missense	c.200	p.A67V	0.416	HMMPfam_CDK2AP	HMMPfam_CDK2AP	-	no_errors	
LOC100289462	0	genome.wustl.edu	37	8	7272523	7272523	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	7272523	7272523	G	C	SNP	LOC100289462	XM_002342811	human	genbank	57_37b	-1	model	missense	c.155	p.T52S	0.001	HMMPfam_Defensin_beta,superfamily_SSF57392,HMMSmart_DEFSN	HMMPfam_Defensin_beta,superfamily_SSF57392,HMMSmart_DEFSN	-	no_errors	
LOC100290278	0	genome.wustl.edu	37	14	53428573	53428573	+	RNA	SNP	A	A	C	rs59825463	byCluster;byFrequency;by1000genomes	TCGA-A8-A081-01	TCGA-A8-A081-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	53428573	53428573	A	C	SNP	LOC100290278	XR_079344	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.003	-	-	-		
LOC730005	730005	genome.wustl.edu	37	22	30921438	30921438	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	30921438	30921438	C	T	SNP	LOC730005	XM_001132040	human	genbank	57_37b	-1	model	missense	c.980	p.R327Q	0.934	superfamily_SSF101576	superfamily_Sec14p_like_N,HMMPfam_CRAL_TRIO_N,HMMSmart_SEC14,superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO,superfamily_SSF101576	-	no_errors	
LOC730978	730978	genome.wustl.edu	37	1	224136278	224136278	+	RNA	SNP	A	G	G	rs9660904	byCluster	TCGA-A8-A081-01	TCGA-A8-A081-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	224136278	224136278	A	G	SNP	LOC730978	XR_037258	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.991	-	-	-		
LPA	4018	genome.wustl.edu	37	6	161026093	161026093	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	161026093	161026093	G	T	SNP	LPA	NM_005577	human	genbank	57_37b	-1	reviewed	missense	c.2930	p.A977E	0.158	superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle	superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
LRRC37A3	374819	genome.wustl.edu	37	17	62856170	62856170	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	62856170	62856170	A	G	SNP	LRRC37A3	NM_199340	human	genbank	57_37b	-1	provisional	missense	c.4094	p.L1365P	0.003	NULL	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1	-	no_errors	
LRRC50	123872	genome.wustl.edu	37	16	84208293	84208293	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	84208293	84208293	G	A	SNP	LRRC50	NM_178452	human	genbank	57_37b	+1	validated	missense	c.1663	p.D555N	0.998	NULL	superfamily_Outer arm dynein light chain 1,HMMSmart_SM00365,HMMPfam_LRR_1	-	no_errors	
MDN1	23195	genome.wustl.edu	37	6	90353899	90353899	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	90353899	90353899	T	C	SNP	MDN1	NM_014611	human	genbank	57_37b	-1	provisional	missense	c.16616	p.D5539G	1.000	superfamily_vWA-like,HMMSmart_SM00327	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_vWA-like,HMMSmart_SM00327	-	no_errors	
MIR1231	0	genome.wustl.edu	37	1	201777790	201777790	+	RNA	SNP	C	C	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	201777790	201777790	C	A	SNP	MIR1231	ENST00000408101	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
MYH1	4619	genome.wustl.edu	37	17	10419370	10419370	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	10419370	10419370	G	C	SNP	MYH1	NM_005963	human	genbank	57_37b	-1	reviewed	silent	c.378	p.V126	1.000	superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors	
MYST4	23522	genome.wustl.edu	37	10	76729488	76729488	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	76729488	76729488	C	G	SNP	MYST4	NM_012330	human	genbank	57_37b	+1	validated	missense	c.801	p.I267M	1.000	HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_FYVE/PHD zinc finger	"HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_MOZ_SAS"	-	no_errors	
NR4A3	8013	genome.wustl.edu	37	9	102595691	102595691	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	102595691	102595691	C	T	SNP	NR4A3	NM_173200	human	genbank	57_37b	+1	reviewed	silent	c.1242	p.V414	0.996	superfamily_Str_ncl_receptor	HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors	
NXF5	55998	genome.wustl.edu	37	X	101096037	101096037	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	101096037	101096037	C	T	SNP	NXF5	NM_032946	human	genbank	57_37b	-1	reviewed	missense	c.431	p.R144K	1.000	superfamily_L domain-like	superfamily_RNA-binding domain RBD,HMMPfam_Tap-RNA_bind,superfamily_L domain-like,superfamily_NTF2-like	-	no_errors	
NXF5	55998	genome.wustl.edu	37	X	101096477	101096477	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	101096477	101096477	C	G	SNP	NXF5	NM_032946	human	genbank	57_37b	-1	reviewed	missense	c.294	p.L98F	0.948	superfamily_L domain-like	HMMPfam_Tap-RNA_bind,superfamily_L domain-like,superfamily_NTF2-like,superfamily_RNA-binding domain RBD	-	no_errors	
OR2L2	26246	genome.wustl.edu	37	1	248201688	248201688	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248201688	248201688	G	T	SNP	OR2L2	NM_001004686	human	genbank	57_37b	+1	provisional	missense	c.119	p.G40V	0.797	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR5D16	390144	genome.wustl.edu	37	11	55607005	55607005	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55607005	55607005	C	G	SNP	OR5D16	NM_001005496	human	genbank	57_37b	+1	provisional	missense	c.778	p.L260V	0.001	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
OSBPL9	114883	genome.wustl.edu	37	1	52227565	52227565	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	52227565	52227565	C	T	SNP	OSBPL9	NM_148909	human	genbank	57_37b	+1	reviewed	nonsense	c.730	p.Q244*	1.000	NULL	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729,HMMPfam_Oxysterol_BP,PatternScan_OSBP	-	no_errors	
PCDHB4	56131	genome.wustl.edu	37	5	140502504	140502504	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140502504	140502504	C	T	SNP	PCDHB4	NM_018938	human	genbank	57_37b	+1	reviewed	silent	c.924	p.F308	1.000	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA	-	no_errors	
PFKM	5213	genome.wustl.edu	37	12	48539040	48539040	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	48539040	48539040	C	T	SNP	PFKM	NM_000289	human	genbank	57_37b	+1	reviewed	missense	c.2140	p.R714C	1.000	superfamily_Phosphofructokinase	HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE	-	no_errors	
PHACTR1	221692	genome.wustl.edu	37	6	13053669	13053669	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	13053669	13053669	G	A	SNP	PHACTR1	NM_030948	human	genbank	57_37b	+1	validated	missense	c.323	p.R108H	1.000	NULL	HMMPfam_RPEL,HMMSmart_SM00707	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A8-A081-01	TCGA-A8-A081-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PPFIA4	8497	genome.wustl.edu	37	1	203024614	203024614	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	203024614	203024614	G	A	SNP	PPFIA4	NM_015053	human	genbank	57_37b	+1	validated	silent	c.366	p.T122	0.002	NULL	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2	-	no_errors	
PRDM8	56978	genome.wustl.edu	37	4	81123205	81123205	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	81123205	81123205	G	A	SNP	PRDM8	NM_001099403	human	genbank	57_37b	+1	validated	missense	c.589	p.V197M	0.069	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_TUBULIN,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors	
PRKD3	23683	genome.wustl.edu	37	2	37543649	37543649	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	37543649	37543649	G	C	SNP	PRKD3	NM_005813	human	genbank	57_37b	-1	reviewed	missense	c.19	p.P7A	1.000	NULL	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
PRKG2	5593	genome.wustl.edu	37	4	82092908	82092908	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	82092908	82092908	T	C	SNP	PRKG2	NM_006259	human	genbank	57_37b	-1	provisional	missense	c.679	p.M227V	0.970	superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding	superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X	-	no_errors	
PTPRS	5802	genome.wustl.edu	37	19	5265033	5265033	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	5265033	5265033	T	C	SNP	PTPRS	NM_002850	human	genbank	57_37b	-1	reviewed	missense	c.554	p.K185R	1.000	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
PYGM	5837	genome.wustl.edu	37	11	64514134	64514134	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64514134	64514134	G	C	SNP	PYGM	NM_005609	human	genbank	57_37b	-1	reviewed	missense	c.2526	p.I842M	0.963	NULL	superfamily_SSF53756,HMMPfam_Phosphorylase,PatternScan_PHOSPHORYLASE	-	no_errors	
RBAK	57786	genome.wustl.edu	37	7	5024707	5024707	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	5024707	5024707	G	T	SNP	RBAK	ENST00000407184	human	ensembl	57_37b	+1	known	splice_site	c.1+1	e0+1	1.000	-	-	-	no_errors	
SAP130	79595	genome.wustl.edu	37	2	128774072	128774074	+	In_Frame_Del	DEL	GGT	GGT	-	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	GGT	GGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	128774072	128774074	GGT	-	DEL	SAP130	NM_024545	human	genbank	57_37b	-1	validated	in_frame_del	c.476_474	p.P159in_frame_del	1.000:1.000:1.000	NULL	NULL	(deletion:cds_exon[128773963,128774121])	no_errors	
SCN7A	6332	genome.wustl.edu	37	2	167304187	167304187	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	167304187	167304187	C	A	SNP	SCN7A	NM_002976	human	genbank	57_37b	-1	validated	missense	c.1322	p.R441M	0.997	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc	-	no_errors	
SEMA4F	10505	genome.wustl.edu	37	2	74900921	74900921	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74900921	74900921	G	A	SNP	SEMA4F	NM_004263	human	genbank	57_37b	+1	provisional	missense	c.788	p.R263H	0.001	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat	-	no_errors	
SGK1	6446	genome.wustl.edu	37	6	134495199	134495199	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	134495199	134495199	A	C	SNP	SGK1	NM_001143676	human	genbank	57_37b	-1	reviewed	missense	c.457	p.L153V	1.000	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-	no_errors	
SLC35E1	79939	genome.wustl.edu	37	19	16678954	16678954	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	16678954	16678954	G	T	SNP	SLC35E1	NM_024881	human	genbank	57_37b	-1	validated	silent	c.519	p.I173	1.000	HMMPfam_DUF6,superfamily_Multidrug resistance efflux transporter EmrE	HMMPfam_DUF6,superfamily_Multidrug resistance efflux transporter EmrE,HMMPfam_TPT	-	no_errors	
SLITRK6	84189	genome.wustl.edu	37	13	86369619	86369619	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	86369619	86369619	C	T	SNP	SLITRK6	NM_032229	human	genbank	57_37b	-1	validated	missense	c.1025	p.G342E	1.000	superfamily_L domain-like	superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT	-	no_errors	
SORBS2	8470	genome.wustl.edu	37	4	186544917	186544917	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	186544917	186544917	C	G	SNP	SORBS2	NM_021069	human	genbank	57_37b	-1	reviewed	missense	c.1654	p.E552Q	1.000	NULL	HMMPfam_Sorb,HMMSmart_SM00459,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
SPHKAP	80309	genome.wustl.edu	37	2	228882135	228882135	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	228882135	228882135	C	G	SNP	SPHKAP	NM_001142644	human	genbank	57_37b	-1	validated	missense	c.3435	p.E1145D	0.986	NULL	HMMPfam_AKAP_110	-	no_errors	
TMEM209	84928	genome.wustl.edu	37	7	129832501	129832501	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	129832501	129832501	G	A	SNP	TMEM209	NM_032842	human	genbank	57_37b	-1	validated	missense	c.736	p.L246F	1.000	HMMPfam_CytochromB561_N	HMMPfam_CytochromB561_N	-	no_errors	
TNC	3371	genome.wustl.edu	37	9	117838356	117838356	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	117838356	117838356	T	G	SNP	TNC	NM_002160	human	genbank	57_37b	-1	validated	missense	c.2905	p.K969Q	1.000	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF,HMMPfam_EGF_2,HMMPfam_EGF,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMSmart_FBG,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen_a/b/g_C	-	no_errors	
TNFSF18	8995	genome.wustl.edu	37	1	173019924	173019924	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	173019924	173019924	A	C	SNP	TNFSF18	NM_005092	human	genbank	57_37b	-1	reviewed	missense	c.179	p.L60R	0.006	NULL	superfamily_TNF_like,HMMPfam_TNF	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578508	7578508	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578508	7578508	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.422	p.C141Y	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
USP15	9958	genome.wustl.edu	37	12	62777654	62777655	+	Frame_Shift_Ins	INS	-	-	GATATCA	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	62777654	62777655	-	GATATCA	INS	USP15	NM_006313	human	genbank	57_37b	+1	provisional	frame_shift_ins	c.1036_1037	p.Q349fs	1.000:1.000	superfamily_SSF54001,HMMPfam_UCH	HMMSmart_DUSP,HMMPfam_DUF1055,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,superfamily_RNA3apos_cycl/enolpyr_transf_A/B,PatternScan_UCH_2_2	-	no_errors	
UTP14A	10813	genome.wustl.edu	37	X	129058966	129058966	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	129058966	129058966	A	C	SNP	UTP14A	NM_006649	human	genbank	57_37b	+1	reviewed	missense	c.1544	p.E515A	0.157	HMMPfam_Utp14	HMMPfam_Utp14	-	no_errors	
UTP20	27340	genome.wustl.edu	37	12	101750765	101750765	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	101750765	101750765	C	T	SNP	UTP20	NM_014503	human	genbank	57_37b	+1	validated	missense	c.5596	p.R1866C	0.999	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_DRIM	-	no_errors	
XIRP2	129446	genome.wustl.edu	37	2	168107195	168107195	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	168107195	168107195	C	A	SNP	XIRP2	NM_152381	human	genbank	57_37b	+1	validated	missense	c.9293	p.T3098N	0.000	NULL	HMMPfam_Xin	-	no_errors	
XIRP2	129446	genome.wustl.edu	37	2	168114995	168114995	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	168114995	168114995	G	A	SNP	XIRP2	NM_001079810	human	genbank	57_37b	+1	validated	missense	c.1939	p.D647N	0.945	NULL	superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors	
ZC3H12B	340554	genome.wustl.edu	37	X	64708837	64708837	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	64708837	64708837	G	T	SNP	ZC3H12B	NM_001010888	human	genbank	57_37b	+1	validated	missense	c.123	p.K41N	0.018	NULL	NULL	-	no_errors	
ZNF217	7764	genome.wustl.edu	37	20	52192376	52192376	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	52192376	52192376	C	G	SNP	ZNF217	NM_006526	human	genbank	57_37b	-1	validated	missense	c.2927	p.S976T	0.002	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors	
ZNF235	9310	genome.wustl.edu	37	19	44792449	44792449	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	44792449	44792449	C	A	SNP	ZNF235	NM_004234	human	genbank	57_37b	-1	reviewed	missense	c.1139	p.C380F	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF510	22869	genome.wustl.edu	37	9	99521488	99521512	+	Frame_Shift_Del	DEL	TCTCCCCAGTGTGAGTTCTCTGATG	TCTCCCCAGTGTGAGTTCTCTGATG	-	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	TCTCCCCAGTGTGAGTTCTCTGATG	TCTCCCCAGTGTGAGTTCTCTGATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	99521488	99521512	TCTCCCCAGTGTGAGTTCTCTGATG	-	DEL	ZNF510	NM_014930	human	genbank	57_37b	-1	provisional	frame_shift_del	c.1624_1600	p.H534fs	1.000:1.000:1.000:0.999:0.638:0.788:0.803:0.583:0.623:0.982:0.985:1.000:1.000:0.996:0.997:1.000:1.000:1.000:1.000:0.964:0.964:1.000:1.000:1.000:0.996	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[99521060,99522759])	no_errors	
ZNF510	22869	genome.wustl.edu	37	9	99521789	99521789	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	99521789	99521789	G	A	SNP	ZNF510	NM_014930	human	genbank	57_37b	-1	provisional	silent	c.1323	p.F441	0.967	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF536	9745	genome.wustl.edu	37	19	31039300	31039300	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	31039300	31039300	T	G	SNP	ZNF536	NM_014717	human	genbank	57_37b	+1	provisional	missense	c.2774	p.F925C	1.000	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF600	162966	genome.wustl.edu	37	19	53270087	53270087	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A081-01	TCGA-A8-A081-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53270087	53270087	C	G	SNP	ZNF600	NM_198457	human	genbank	57_37b	-1	validated	missense	c.922	p.D308H	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors	
