Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ANK1	286	genome.wustl.edu	37	8	41525809	41525809	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	41525809	41525809	C	T	SNP	ANK1	NM_001142446	human	genbank	57_37b	-1	reviewed	silent	c.5493	p.K1831	0.000	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,HMMSmart_ZU5,HMMSmart_DEATH,superfamily_DEATH_like,HMMPfam_Death	-	no_errors	
ATAD3B	83858	genome.wustl.edu	37	1	1430987	1430987	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1430987	1430987	C	T	SNP	ATAD3B	NM_031921	human	genbank	57_37b	+1	provisional	silent	c.1737	p.R579	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA	-	no_errors	
BHMT2	23743	genome.wustl.edu	37	5	78379147	78379147	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	78379147	78379147	C	T	SNP	BHMT2	NM_017614	human	genbank	57_37b	+1	reviewed	missense	c.731	p.A244V	0.998	superfamily_S_methyl_trans,HMMPfam_S-methyl_trans	superfamily_S_methyl_trans,HMMPfam_S-methyl_trans	-	no_errors	
C1orf144	26099	genome.wustl.edu	37	1	16719821	16719821	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16719821	16719821	C	T	SNP	C1orf144	NM_001114600	human	genbank	57_37b	+1	provisional	missense	c.200	p.T67I	1.000	NULL	NULL	-	no_errors	
CCDC45	90799	genome.wustl.edu	37	17	62533802	62533802	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	62533802	62533802	G	A	SNP	CCDC45	NM_138363	human	genbank	57_37b	+1	provisional	missense	c.2371	p.D791N	1.000	NULL	NULL	-	no_errors	
CERCAM	51148	genome.wustl.edu	37	9	131186755	131186755	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131186755	131186755	G	T	SNP	CERCAM	NM_016174	human	genbank	57_37b	+1	validated	missense	c.628	p.V210F	1.000	NULL	HMMPfam_Glyco_transf_25	-	no_errors	
CLDN8	9073	genome.wustl.edu	37	21	31587665	31587665	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	31587665	31587665	A	G	SNP	CLDN8	NM_199328	human	genbank	57_37b	-1	validated	silent	c.579	p.S193	0.000	NULL	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN	-	no_errors	
CRISPLD1	83690	genome.wustl.edu	37	8	75927084	75927084	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	75927084	75927084	C	T	SNP	CRISPLD1	NM_031461	human	genbank	57_37b	+1	validated	missense	c.664	p.R222W	0.873	NULL	superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP,PatternScan_CRISP_2,superfamily_LCCL domain,HMMSmart_SM00603,HMMPfam_LCCL	-	no_errors	
CYR61	3491	genome.wustl.edu	37	1	86047823	86047823	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	86047823	86047823	G	A	SNP	CYR61	NM_001554	human	genbank	57_37b	+1	validated	missense	c.490	p.D164N	1.000	NULL	HMMSmart_SM00121,HMMPfam_IGFBP,PatternScan_IGFBP_N_1,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,superfamily_TSP-1 type 1 repeat,HMMPfam_TSP_1,HMMSmart_SM00209,HMMPfam_Cys_knot,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors	
DCHS2	54798	genome.wustl.edu	37	4	155253827	155253827	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	155253827	155253827	A	T	SNP	DCHS2	NM_017639	human	genbank	57_37b	-1	validated	missense	c.2036	p.I679N	0.003	superfamily_Cadherin-like,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-	no_errors	
DDX12	440081	genome.wustl.edu	37	12	9590052	9590052	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	9590052	9590052	G	A	SNP	DDX12	NM_004400	human	genbank	57_37b	-1	validated	missense	c.427	p.R143C	0.998	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00488	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00488,HMMPfam_DEAD_2,HMMSmart_SM00491	-	no_errors	
DENND5A	23258	genome.wustl.edu	37	11	9167307	9167307	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	9167307	9167307	G	A	SNP	DENND5A	NM_015213	human	genbank	57_37b	-1	validated	silent	c.2913	p.F971	1.000	superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_RUN,HMMSmart_SM00593,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT	-	no_errors	
ENSG00000246926	0	genome.wustl.edu	37	1	235270774	235270774	+	RNA	SNP	C	C	T	rs4567344	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A8-A090-01	TCGA-A8-A090-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	235270774	235270774	C	T	SNP	ENSG00000246926	ENST00000500100	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
FAM124B	79843	genome.wustl.edu	37	2	225266148	225266148	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	225266148	225266148	T	C	SNP	FAM124B	NM_001122779	human	genbank	57_37b	-1	validated	missense	c.338	p.N113S	0.001	NULL	NULL	-	no_errors	
FLNB	2317	genome.wustl.edu	37	3	58140575	58140576	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	58140575	58140576	-	G	INS	FLNB	NM_001457	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.6692_6693	p.S2234fs	1.000:1.000	HMMPfam_Filamin,superfamily_Ig_E-set,HMMSmart_IG_FLMN	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Ig_E-set,HMMPfam_Filamin,HMMSmart_IG_FLMN	-	no_errors	
GSPT2	23708	genome.wustl.edu	37	X	51488498	51488498	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	51488498	51488498	C	T	SNP	GSPT2	NM_018094	human	genbank	57_37b	+1	validated	silent	c.1776	p.I592	1.000	HMMPfam_GTP_EFTU_D3,superfamily_Elong_init_C	HMMPfam_PAM2,superfamily_SSF52540,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_Elong_init_C	-	no_errors	
IGSF3	3321	genome.wustl.edu	37	1	117146250	117146250	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	117146250	117146250	A	G	SNP	IGSF3	NM_001542	human	genbank	57_37b	-1	validated	silent	c.1680	p.A560	0.921	NULL	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_ig	-	no_errors	
ITPKA	3706	genome.wustl.edu	37	15	41794697	41794697	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	41794697	41794697	T	C	SNP	ITPKA	NM_002220	human	genbank	57_37b	+1	reviewed	missense	c.1106	p.V369A	1.000	HMMPfam_IPK,superfamily_SSF56104	HMMPfam_IPK,superfamily_SSF56104	-	no_errors	
KLHL8	57563	genome.wustl.edu	37	4	88104522	88104522	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	88104522	88104522	G	A	SNP	KLHL8	NM_020803	human	genbank	57_37b	-1	validated	missense	c.785	p.P262L	1.000	HMMPfam_BACK	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors	
KRTAP19-6	337973	genome.wustl.edu	37	21	31913983	31913983	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	31913983	31913983	A	G	SNP	KRTAP19-6	NM_181612	human	genbank	57_37b	-1	provisional	missense	c.170	p.F57S	0.164	NULL	NULL	-	no_errors	
LAMA2	3908	genome.wustl.edu	37	6	129712680	129712680	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	129712680	129712680	C	T	SNP	LAMA2	NM_000426	human	genbank	57_37b	+1	reviewed	nonsense	c.5116	p.R1706*	0.991	superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I	HMMSmart_LamNT,HMMPfam_Laminin_N,superfamily_Gal_bind_like,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_LAM_1,superfamily_SSF57196,PatternScan_EGF_2,HMMSmart_LamB,HMMPfam_Laminin_B,HMMPfam_Laminin_I,superfamily_SSF56399,HMMPfam_Laminin_II,HMMSmart_LamG,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	-	no_errors	
LASP1	3927	genome.wustl.edu	37	17	37070658	37070658	+	Silent	SNP	A	A	G	rs525989	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A090-01	TCGA-A8-A090-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37070658	37070658	A	G	SNP	LASP1	NM_006148	human	genbank	57_37b	+1	validated	silent	c.438	p.S146	0.615	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-		
LONP2	83752	genome.wustl.edu	37	16	48303987	48303987	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	48303987	48303987	A	T	SNP	LONP2	NM_031490	human	genbank	57_37b	+1	provisional	missense	c.1043	p.K348I	1.000	superfamily_SSF52540	HMMPfam_LON,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,HMMPfam_Lon_C,superfamily_Ribosomal_S5_D2-typ_fold,PatternScan_LON_SER	-	no_errors	
MED7	9443	genome.wustl.edu	37	5	156566070	156566070	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	156566070	156566070	C	A	SNP	MED7	NM_001100816	human	genbank	57_37b	-1	reviewed	nonsense	c.373	p.E125*	1.000	HMMPfam_MED7	HMMPfam_MED7	-	no_errors	
MRPS30	10884	genome.wustl.edu	37	5	44809162	44809162	+	Missense_Mutation	SNP	G	G	C	rs3747479	byCluster;byFrequency;by1000genomes	TCGA-A8-A090-01	TCGA-A8-A090-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	44809162	44809162	G	C	SNP	MRPS30	NM_016640	human	genbank	57_37b	+1	reviewed	missense	c.98	p.C33S	0.000	HMMPfam_PDCD9	HMMPfam_PDCD9	-		
MYOM3	127294	genome.wustl.edu	37	1	24432477	24432477	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	24432477	24432477	C	T	SNP	MYOM3	NM_152372	human	genbank	57_37b	-1	validated	missense	c.493	p.V165I	0.997	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_EF_HAND_1,HMMPfam_ig	-	no_errors	
OPA1	4976	genome.wustl.edu	37	3	193365903	193365903	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	193365903	193365903	C	T	SNP	OPA1	NM_130837	human	genbank	57_37b	+1	reviewed	missense	c.1915	p.R639C	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N	-	no_errors	
OTUD7B	56957	genome.wustl.edu	37	1	149931697	149931697	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	149931697	149931697	C	T	SNP	OTUD7B	NM_020205	human	genbank	57_37b	-1	validated	missense	c.751	p.E251K	1.000	HMMPfam_OTU	superfamily_UBA-like,HMMPfam_OTU,HMMSmart_SM00259	-	no_errors	
PDK4	5166	genome.wustl.edu	37	7	95216383	95216383	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	95216383	95216383	T	A	SNP	PDK4	NM_002612	human	genbank	57_37b	-1	reviewed	missense	c.1034	p.Q345L	1.000	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,HMMSmart_SM00387	superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain,HMMPfam_BCDHK_Adom3,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,HMMSmart_SM00387	-	no_errors	
PNLIPRP1	5407	genome.wustl.edu	37	10	118368603	118368603	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	118368603	118368603	C	T	SNP	PNLIPRP1	NM_006229	human	genbank	57_37b	+1	provisional	missense	c.1379	p.T460M	0.005	superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308	-	no_errors	
PPP1R3B	79660	genome.wustl.edu	37	8	8998443	8998448	+	In_Frame_Del	DEL	GTAGAT	GTAGAT	-	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	GTAGAT	GTAGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	8998443	8998448	GTAGAT	-	DEL	PPP1R3B	NM_024607	human	genbank	57_37b	-1	validated	in_frame_del	c.719_714	p.KST238in_frame_delN	0.005:0.000:0.000:0.000:0.000:0.000	NULL	HMMPfam_CBM_21	(deletion:cds_exon[8998304,8999161])	no_errors	
PRAMEF14	729528	genome.wustl.edu	37	1	13669040	13669040	+	Silent	SNP	G	G	A	rs2142947	bySubmitter	TCGA-A8-A090-01	TCGA-A8-A090-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	13669040	13669040	G	A	SNP	PRAMEF14	NM_001099854	human	genbank	57_37b	-1	provisional	silent	c.1146	p.F382	0.000	superfamily_SSF52047	superfamily_SSF52047	-		
SEC16B	89866	genome.wustl.edu	37	1	177905472	177905472	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	177905472	177905472	G	A	SNP	SEC16B	NM_033127	human	genbank	57_37b	-1	validated	silent	c.2532	p.S844	0.003	NULL	PatternScan_PHOSPHOPANTETHEINE	-	no_errors	
SEMA5B	54437	genome.wustl.edu	37	3	122634434	122634434	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	122634434	122634434	G	A	SNP	SEMA5B	NM_001031702	human	genbank	57_37b	-1	validated	missense	c.1841	p.P614L	0.993	superfamily_TSP-1 type 1 repeat	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-	no_errors	
SLC5A2	6524	genome.wustl.edu	37	16	31500276	31500276	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	31500276	31500276	C	A	SNP	SLC5A2	NM_003041	human	genbank	57_37b	+1	reviewed	silent	c.1356	p.L452	1.000	HMMPfam_SSF	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2	-	no_errors	
SYCP2	10388	genome.wustl.edu	37	20	58467628	58467628	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	58467628	58467628	T	C	SNP	SYCP2	NM_014258	human	genbank	57_37b	-1	reviewed	missense	c.1922	p.N641S	0.007	NULL	NULL	-	no_errors	
TCF4	6925	genome.wustl.edu	37	18	52928697	52928697	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	52928697	52928697	C	T	SNP	TCF4	NM_001083962	human	genbank	57_37b	-1	reviewed	silent	c.990	p.S330	1.000	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors	
TMPRSS2	7113	genome.wustl.edu	37	21	42866383	42866383	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	42866383	42866383	C	T	SNP	TMPRSS2	NM_005656	human	genbank	57_37b	-1	reviewed	silent	c.138	p.P46	0.067	NULL	superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
WNT2	7472	genome.wustl.edu	37	7	116918218	116918218	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	116918218	116918218	G	A	SNP	WNT2	NM_003391	human	genbank	57_37b	-1	reviewed	silent	c.1074	p.T358	0.000	NULL	HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1	-	no_errors	
ZCCHC11	23318	genome.wustl.edu	37	1	52933940	52933940	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-A8-A090-01	TCGA-A8-A090-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	52933940	52933940	C	A	SNP	ZCCHC11	NM_001009881	human	genbank	57_37b	-1	validated	splice_site	c.2879-1	e14-1	1.000	-	-	-	no_errors	
