Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACAN	176	genome.wustl.edu	37	15	89401208	89401208	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	89401208	89401208	C	A	SNP	ACAN	NM_013227	human	genbank	57_37b	+1	reviewed	missense	c.5047	p.Q1683K	0.960	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406,PatternScan_IG_MHC,HMMSmart_SM00445,HMMPfam_Xlink,superfamily_C-type lectin-like,PatternScan_LINK_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors	
AIM1L	55057	genome.wustl.edu	37	1	26664147	26664147	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	26664147	26664147	G	T	SNP	AIM1L	NM_001039775	human	genbank	57_37b	-1	validated	missense	c.391	p.P131T	1.000	superfamily_G_crystallin_SF,HMMPfam_Crystall,HMMSmart_XTALbg	superfamily_G_crystallin_SF,HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_RicinB_like,HMMSmart_RICIN,HMMPfam_Ricin_B_lectin	-	no_errors	
AP1G2	8906	genome.wustl.edu	37	14	24030809	24030809	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24030809	24030809	C	T	SNP	AP1G2	NM_003917	human	genbank	57_37b	-1	reviewed	missense	c.1769	p.R590Q	0.032	NULL	superfamily_ARM-type_fold,HMMPfam_Adaptin_N,superfamily_Clath_adapt,HMMPfam_Alpha_adaptinC2,HMMSmart_Alpha_adaptinC2	-	no_errors	
ASXL1	171023	genome.wustl.edu	37	20	31022345	31022345	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	31022345	31022345	C	T	SNP	ASXL1	NM_015338	human	genbank	57_37b	+1	reviewed	silent	c.1830	p.G610	0.020	NULL	NULL	-	no_errors	
ATP6V1B2	526	genome.wustl.edu	37	8	20077864	20077872	+	In_Frame_Del	DEL	CTCAGAGCA	CTCAGAGCA	-	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	CTCAGAGCA	CTCAGAGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	20077864	20077872	CTCAGAGCA	-	DEL	ATP6V1B2	NM_001693	human	genbank	57_37b	+1	reviewed	in_frame_del	c.1487_1495	p.QST497in_frame_del	1.000:0.988:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_ATP-synt_ab_C	HMMPfam_ATP-synt_ab_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ATP-synt_ab,PatternScan_ATPASE_ALPHA_BETA,HMMPfam_ATP-synt_ab_C	(deletion:cds_exon[20077774,20077913])	no_errors	
BTN3A3	10384	genome.wustl.edu	37	6	26452000	26452000	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26452000	26452000	A	G	SNP	BTN3A3	NM_006994	human	genbank	57_37b	+1	validated	silent	c.1116	p.P372	0.056	HMMSmart_PRY	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors	
CIT	11113	genome.wustl.edu	37	12	120156521	120156521	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	120156521	120156521	C	T	SNP	CIT	NM_007174	human	genbank	57_37b	-1	validated	missense	c.3860	p.R1287Q	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C,PatternScan_CPSASE_2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00036,HMMPfam_CNH	-	no_errors	
CNTLN	54875	genome.wustl.edu	37	9	17332708	17332708	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	17332708	17332708	G	C	SNP	CNTLN	NM_017738	human	genbank	57_37b	+1	validated	missense	c.1624	p.E542Q	1.000	NULL	superfamily_Prefoldin	-	no_errors	
COL4A1	1282	genome.wustl.edu	37	13	110839539	110839539	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	110839539	110839539	C	T	SNP	COL4A1	NM_001845	human	genbank	57_37b	-1	reviewed	silent	c.1674	p.A558	0.939	HMMPfam_Collagen	HMMPfam_Collagen,superfamily_C-type lectin-like,HMMPfam_C4,HMMSmart_SM00111	-	no_errors	
DARC	2532	genome.wustl.edu	37	1	159175674	159175674	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	159175674	159175674	T	A	SNP	DARC	NM_001122951	human	genbank	57_37b	+1	reviewed	missense	c.451	p.C151S	0.000	NULL	NULL	-	no_errors	
ENSG00000238802	0	genome.wustl.edu	37	4	129677243	129677243	+	RNA	SNP	G	A	A	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	129677243	129677243	G	A	SNP	ENSG00000238802	ENST00000459599	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	
ENSG00000246693	0	genome.wustl.edu	37	10	97366825	97366825	+	RNA	SNP	C	C	A	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	97366825	97366825	C	A	SNP	ENSG00000246693	ENST00000498925	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	
FGFR4	2264	genome.wustl.edu	37	5	176519392	176519392	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176519392	176519392	C	T	SNP	FGFR4	NM_002011	human	genbank	57_37b	+1	reviewed	silent	c.798	p.D266	0.465	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8115874	8115875	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8115874	8115875	-	G	INS	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1223_1224	p.P409fs	0.903:0.359	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors	
GLYAT	10249	genome.wustl.edu	37	11	58477428	58477428	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	58477428	58477428	C	A	SNP	GLYAT	NM_201648	human	genbank	57_37b	-1	validated	missense	c.702	p.L234F	0.538	superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_Gly_acyl_tr_C	PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_Gly_acyl_tr_C	-	no_errors	
HSPA8	3312	genome.wustl.edu	37	11	122928986	122928991	+	In_Frame_Del	DEL	TTTCAT	TTTCAT	-	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	TTTCAT	TTTCAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	122928986	122928991	TTTCAT	-	DEL	HSPA8	NM_006597	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1729_1724	p.NE575in_frame_del	1.000:0.988:1.000:1.000:0.996:1.000	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain	superfamily_Actin-like ATPase domain,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain	(deletion:cds_exon[122928960,122929192])	no_errors	
IARS2	55699	genome.wustl.edu	37	1	220307827	220307827	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	220307827	220307827	G	T	SNP	IARS2	NM_018060	human	genbank	57_37b	+1	validated	missense	c.1921	p.A641S	1.000	superfamily_Nucleotidylyl transferase,HMMPfam_tRNA-synt_1	superfamily_Nucleotidylyl transferase,HMMPfam_tRNA-synt_1,PatternScan_AA_TRNA_LIGASE_I,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1,HMMPfam_zf-FPG_IleRS	-	no_errors	
JPH1	56704	genome.wustl.edu	37	8	75227343	75227343	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	75227343	75227343	G	A	SNP	JPH1	NM_020647	human	genbank	57_37b	-1	reviewed	missense	c.892	p.R298C	1.000	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698,HMMPfam_MORN	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698,HMMPfam_MORN	-	no_errors	
KCNJ2	3759	genome.wustl.edu	37	17	68172397	68172397	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	68172397	68172397	T	C	SNP	KCNJ2	NM_000891	human	genbank	57_37b	+1	reviewed	missense	c.1217	p.I406T	0.656	NULL	HMMPfam_IRK_N,HMMPfam_IRK,superfamily_Voltage-gated potassium channels,superfamily_E set domains	-	no_errors	
LOC646214	646214	genome.wustl.edu	37	15	21936054	21936054	+	RNA	SNP	A	A	G	rs12594189	byCluster;byFrequency;byHapMap	TCGA-A8-A09R-01	TCGA-A8-A09R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	21936054	21936054	A	G	SNP	LOC646214	NR_027053	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.146	-	-	-		
LOC647264	647264	genome.wustl.edu	37	13	64406744	64406744	+	RNA	SNP	A	A	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	64406744	64406744	A	T	SNP	LOC647264	XR_078476	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.003	-	-	-	no_errors	
MAD2L1	4085	genome.wustl.edu	37	4	120981377	120981377	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	120981377	120981377	G	T	SNP	MAD2L1	NM_002358	human	genbank	57_37b	-1	reviewed	missense	c.514	p.P172T	1.000	superfamily_The spindle assembly checkpoint protein mad2,HMMPfam_HORMA	superfamily_The spindle assembly checkpoint protein mad2,HMMPfam_HORMA	-	no_errors	
MAN1A1	4121	genome.wustl.edu	37	6	119569483	119569483	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	119569483	119569483	A	G	SNP	MAN1A1	NM_005907	human	genbank	57_37b	-1	reviewed	silent	c.934	p.L312	1.000	superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47	superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47	-	no_errors	
MIR548H4	0	genome.wustl.edu	37	8	26906434	26906438	+	RNA	DEL	TAAAG	TAAAG	-	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	TAAAG	TAAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	26906434	26906438	TAAAG	-	DEL	MIR548H4	ENST00000408689	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.003:0.006:0.031:0.044:0.062	-	-	(deletion:rna[26906370,26906480])	no_errors	
MYH11	4629	genome.wustl.edu	37	16	15797924	15797924	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	15797924	15797924	A	G	SNP	MYH11	NM_001040114	human	genbank	57_37b	-1	reviewed	missense	c.5864	p.I1955T	1.000	NULL	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors	
NFATC2	4773	genome.wustl.edu	37	20	50140351	50140351	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	50140351	50140351	G	A	SNP	NFATC2	NM_173091	human	genbank	57_37b	-1	reviewed	silent	c.429	p.A143	0.200	NULL	superfamily_p53-like transcription factors,HMMPfam_RHD,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG	-	no_errors	
NUB1	51667	genome.wustl.edu	37	7	151064964	151064964	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151064964	151064964	G	C	SNP	NUB1	NM_016118	human	genbank	57_37b	+1	validated	missense	c.1005	p.E335D	1.000	NULL	superfamily_SSF54236,superfamily_UBA_like,HMMPfam_UBA,HMMSmart_UBA	-	no_errors	
OR4D2	124538	genome.wustl.edu	37	17	56247170	56247170	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56247170	56247170	G	T	SNP	OR4D2	NM_001004707	human	genbank	57_37b	+1	provisional	missense	c.154	p.D52Y	0.604	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
PDPN	10630	genome.wustl.edu	37	1	13936974	13936974	+	Silent	SNP	C	C	T	rs34384359	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	13936974	13936974	C	T	SNP	PDPN	NM_006474	human	genbank	57_37b	+1	reviewed	silent	c.522	p.S174	0.000	HMMPfam_Podoplanin	HMMPfam_Podoplanin	-		
PGAM4	441531	genome.wustl.edu	37	X	77224588	77224588	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	77224588	77224588	A	C	SNP	PGAM4	NM_001029891	human	genbank	57_37b	-1	validated	missense	c.548	p.I183S	1.000	superfamily_SSF53254,HMMPfam_PGAM	superfamily_SSF53254,HMMPfam_PGAM,PatternScan_PG_MUTASE	-	no_errors	
PLCB1	23236	genome.wustl.edu	37	20	8737739	8737739	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	8737739	8737739	C	T	SNP	PLCB1	NM_015192	human	genbank	57_37b	+1	reviewed	missense	c.2570	p.T857M	0.990	NULL	superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_PLC-beta_C	-	no_errors	
POTEH	23784	genome.wustl.edu	37	22	16277750	16277752	+	In_Frame_Del	DEL	ATT	ATT	-	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	ATT	ATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	16277750	16277752	ATT	-	DEL	POTEH	NM_001136213	human	genbank	57_37b	-1	provisional	in_frame_del	c.1164_1162	p.N388in_frame_del	0.020:0.012:0.009	superfamily_ANK,HMMSmart_ANK	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	(deletion:cds_exon[16277748,16277885])	no_errors	
PPFIA2	8499	genome.wustl.edu	37	12	81851615	81851615	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	81851615	81851615	C	A	SNP	PPFIA2	NM_003625	human	genbank	57_37b	-1	reviewed	missense	c.334	p.A112S	1.000	NULL	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2	-	no_errors	
RPRD1B	58490	genome.wustl.edu	37	20	36662443	36662443	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	36662443	36662443	C	T	SNP	RPRD1B	NM_021215	human	genbank	57_37b	+1	validated	missense	c.94	p.H32Y	1.000	superfamily_ENTH/VHS domain,HMMSmart_SM00582	superfamily_ENTH/VHS domain,HMMSmart_SM00582,HMMPfam_DUF618	-	no_errors	
RUSC2	9853	genome.wustl.edu	37	9	35546754	35546754	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35546754	35546754	G	T	SNP	RUSC2	NM_001135999	human	genbank	57_37b	+1	validated	missense	c.236	p.R79L	0.033	NULL	HMMPfam_RUN,HMMSmart_SM00593,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors	
RYR1	6261	genome.wustl.edu	37	19	38976764	38976764	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38976764	38976764	G	A	SNP	RYR1	NM_000540	human	genbank	57_37b	+1	reviewed	silent	c.5469	p.G1823	0.979	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
RYR3	6263	genome.wustl.edu	37	15	34115275	34115275	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	34115275	34115275	T	G	SNP	RYR3	NM_001036	human	genbank	57_37b	+1	validated	splice_site	c.11072+2	e81+2	1.000	-	-	-	no_errors	
SERPINB1	1992	genome.wustl.edu	37	6	2833961	2833961	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	2833961	2833961	C	T	SNP	SERPINB1	NM_030666	human	genbank	57_37b	-1	provisional	missense	c.1021	p.A341T	0.016	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN,PatternScan_SERPIN	-	no_errors	
SGCD	6444	genome.wustl.edu	37	5	156186373	156186373	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	156186373	156186373	G	T	SNP	SGCD	NM_000337	human	genbank	57_37b	+1	reviewed	missense	c.845	p.C282F	1.000	HMMPfam_Sarcoglycan_1	HMMPfam_Sarcoglycan_1	-	no_errors	
SIPA1L1	26037	genome.wustl.edu	37	14	72171448	72171448	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	72171448	72171448	T	C	SNP	SIPA1L1	NM_015556	human	genbank	57_37b	+1	provisional	silent	c.3657	p.Y1219	1.000	NULL	superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
SLC4A5	57835	genome.wustl.edu	37	2	74489323	74489323	+	Missense_Mutation	SNP	C	C	T	rs17009792	byCluster;byFrequency;by1000genomes	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74489323	74489323	C	T	SNP	SLC4A5	NM_021196	human	genbank	57_37b	-1	reviewed	missense	c.752	p.S251N	0.055	superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto	superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp	-		
SMG1	23049	genome.wustl.edu	37	16	18847853	18847853	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	18847853	18847853	A	G	SNP	SMG1	NM_015092	human	genbank	57_37b	-1	reviewed	missense	c.7606	p.Y2536H	1.000	NULL	superfamily_ARM repeat,HMMPfam_HEAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors	
SMYD1	150572	genome.wustl.edu	37	2	88396144	88396146	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	88396144	88396146	AGA	-	DEL	SMYD1	NM_198274	human	genbank	57_37b	+1	provisional	in_frame_del	c.729_731	p.E244in_frame_del	0.820:0.978:0.976	superfamily_SSF82199,HMMSmart_SET,HMMPfam_SET	superfamily_SSF82199,HMMSmart_SET,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,HMMPfam_SET	(deletion:cds_exon[88396114,88396303])	no_errors	
SND1	27044	genome.wustl.edu	37	7	127326706	127326706	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	127326706	127326706	C	T	SNP	SND1	NM_014390	human	genbank	57_37b	+1	validated	missense	c.118	p.R40C	1.000	superfamily_Staphylococal_nuclease_OB-fold,HMMSmart_SNc	PatternScan_TNASE_1,superfamily_Staphylococal_nuclease_OB-fold,HMMSmart_SNc,HMMPfam_SNase,PatternScan_TNASE_2,HMMPfam_TUDOR,HMMSmart_TUDOR	-	no_errors	
SP100	6672	genome.wustl.edu	37	2	231379957	231379957	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	231379957	231379957	G	C	SNP	SP100	NM_003113	human	genbank	57_37b	+1	validated	missense	c.2242	p.E748Q	1.000	superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	HMMPfam_Sp100,superfamily_SAND domain-like,HMMPfam_SAND,HMMSmart_SM00258,superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	no_errors	
STAU1	6780	genome.wustl.edu	37	20	47734496	47734496	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	47734496	47734496	C	T	SNP	STAU1	NM_017453	human	genbank	57_37b	-1	reviewed	missense	c.1327	p.A443T	1.000	NULL	superfamily_dsRNA-binding domain-like,HMMSmart_SM00358,HMMPfam_dsrm	-	no_errors	
SYNE2	23224	genome.wustl.edu	37	14	64516385	64516386	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	64516385	64516386	AG	-	DEL	SYNE2	NM_182914	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.7434_7435	p.E2479fs	0.000:0.000	NULL	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMSmart_SPEC,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH	(deletion:cds_exon[64516329,64516594])	no_errors	
TBX3	6926	genome.wustl.edu	37	12	115118832	115118832	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	115118832	115118832	C	T	SNP	TBX3	NM_016569	human	genbank	57_37b	-1	reviewed	nonsense	c.509	p.W170*	1.000	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors	
TCF7	6932	genome.wustl.edu	37	5	133477961	133477961	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	133477961	133477961	G	T	SNP	TCF7	NM_003202	human	genbank	57_37b	+1	validated	missense	c.721	p.G241W	1.000	NULL	HMMPfam_CTNNB1_binding,superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors	
TEX15	56154	genome.wustl.edu	37	8	30705950	30705950	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	30705950	30705950	C	G	SNP	TEX15	NM_031271	human	genbank	57_37b	-1	validated	missense	c.584	p.S195T	0.000	NULL	NULL	-	no_errors	
TGFBR3	7049	genome.wustl.edu	37	1	92177900	92177900	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	92177900	92177900	C	T	SNP	TGFBR3	NM_003243	human	genbank	57_37b	-1	validated	missense	c.2066	p.S689N	1.000	HMMPfam_Zona_pellucida,HMMSmart_ZP	HMMPfam_Zona_pellucida,HMMSmart_ZP,PatternScan_ZP_1	-	no_errors	
TGM7	116179	genome.wustl.edu	37	15	43571436	43571436	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43571436	43571436	C	T	SNP	TGM7	NM_052955	human	genbank	57_37b	-1	validated	missense	c.1718	p.R573K	0.407	superfamily_Transglut_C,HMMPfam_Transglut_C	superfamily_Ig_E-set,HMMPfam_Transglut_N,superfamily_SSF54001,HMMSmart_TGc,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES,superfamily_Transglut_C,HMMPfam_Transglut_C	-	no_errors	
TRIM68	55128	genome.wustl.edu	37	11	4621685	4621685	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4621685	4621685	C	T	SNP	TRIM68	NM_018073	human	genbank	57_37b	-1	reviewed	missense	c.1279	p.V427M	0.999	HMMPfam_SPRY,HMMSmart_SPRY	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors	
XIST	7503	genome.wustl.edu	37	X	73043072	73043072	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	73043072	73043072	G	A	SNP	XIST	NR_001564	human	genbank	57_37b	-1	reviewed	rna	NULL	NULL	0.000	-	-	-	no_errors	
ZFHX3	463	genome.wustl.edu	37	16	72830233	72830233	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	72830233	72830233	C	T	SNP	ZFHX3	NM_006885	human	genbank	57_37b	-1	reviewed	silent	c.6348	p.P2116	0.830	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
ZNF644	84146	genome.wustl.edu	37	1	91403092	91403094	+	In_Frame_Del	DEL	TCC	TCC	-	novel	unknown	TCGA-A8-A09R-01	TCGA-A8-A09R-01	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	91403092	91403094	TCC	-	DEL	ZNF644	NM_201269	human	genbank	57_37b	-1	validated	in_frame_del	c.3638_3636	p.E1212in_frame_del	0.997:1.000:1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[91403042,91403647])	no_errors	
