Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAMTS14	140766	genome.wustl.edu	37	10	72517774	72517774	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	72517774	72517774	C	T	SNP	ADAMTS14	NM_139155	human	genbank	57_37b	+1	reviewed	silent	c.3003	p.N1001	0.056	superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1	HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1	-	no_errors	
ADCY4	196883	genome.wustl.edu	37	14	24800227	24800228	+	Frame_Shift_Ins	INS	-	-	AC	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24800227	24800228	-	AC	INS	ADCY4	NM_139247	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.927_926	p.K310fs	0.998:1.000	HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc	HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-	no_errors	
ANGPTL7	10218	genome.wustl.edu	37	1	11254592	11254592	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11254592	11254592	C	T	SNP	ANGPTL7	NM_021146	human	genbank	57_37b	+1	provisional	silent	c.747	p.L249	1.000	HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_Fibrinogen_C	HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_Fibrinogen_C	-	no_errors	
C10orf120	399814	genome.wustl.edu	37	10	124457723	124457723	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	124457723	124457723	T	A	SNP	C10orf120	NM_001010912	human	genbank	57_37b	-1	predicted	silent	c.534	p.G178	0.000	NULL	NULL	-	no_errors	
C12orf56	115749	genome.wustl.edu	37	12	64746720	64746720	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	64746720	64746720	C	A	SNP	C12orf56	NM_001099676	human	genbank	57_37b	-1	validated	missense	c.369	p.R123S	0.836	NULL	NULL	-	no_errors	
CDH1	999	genome.wustl.edu	37	16	68862203	68862204	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68862203	68862204	-	C	INS	CDH1	NM_004360	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.2291_2292	p.Q765fs	1.000:1.000	HMMPfam_Cadherin_C	superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
CIITA	4261	genome.wustl.edu	37	16	10996535	10996535	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	10996535	10996535	T	C	SNP	CIITA	NM_000246	human	genbank	57_37b	+1	reviewed	silent	c.649	p.L217	0.000	NULL	HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368,HMMPfam_LRR_1	-	no_errors	
ENSG00000245058	0	genome.wustl.edu	37	6	26056695	26056695	+	RNA	SNP	C	C	G	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26056695	26056695	C	G	SNP	ENSG00000245058	ENST00000500668	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	
ENSG00000247737	0	genome.wustl.edu	37	13	52338555	52338555	+	RNA	SNP	G	T	T	rs80008756	byCluster;by1000genomes	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	52338555	52338555	G	T	SNP	ENSG00000247737	ENST00000501521	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ESR2	2100	genome.wustl.edu	37	14	64727440	64727440	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	64727440	64727440	G	A	SNP	ESR2	NM_001437	human	genbank	57_37b	-1	reviewed	missense	c.679	p.R227C	1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain),superfamily_Nuclear receptor ligand-binding domain	HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors	
FAM129A	116496	genome.wustl.edu	37	1	184853799	184853799	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	184853799	184853799	A	-	DEL	FAM129A	NM_052966	human	genbank	57_37b	-1	validated	frame_shift_del	c.569	p.L190fs	0.063	NULL	NULL	(deletion:cds_exon[184853767,184853934])	no_errors	
INPP5J	27124	genome.wustl.edu	37	22	31521850	31521850	+	Silent	SNP	A	A	C	rs2240431	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	31521850	31521850	A	C	SNP	INPP5J	ENST00000331075	human	ensembl	57_37b	+1	known	silent	c.1125	p.T375	0.014	NULL	superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos	-		
ITGA11	22801	genome.wustl.edu	37	15	68624257	68624257	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	68624257	68624257	G	A	SNP	ITGA11	NM_001004439	human	genbank	57_37b	-1	reviewed	silent	c.1710	p.H570	0.985	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains	-	no_errors	
LPAR4	2846	genome.wustl.edu	37	X	78011420	78011420	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	78011420	78011420	G	T	SNP	LPAR4	NM_005296	human	genbank	57_37b	+1	reviewed	nonsense	c.1054	p.E352*	1.000	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
MAN2C1	4123	genome.wustl.edu	37	15	75649184	75649184	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	75649184	75649184	G	A	SNP	MAN2C1	NM_006715	human	genbank	57_37b	-1	validated	silent	c.2607	p.N869	0.978	HMMPfam_Glyco_hydro_38C	superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38,superfamily_SSF88688,HMMPfam_Alpha-mann_mid,HMMPfam_Glyco_hydro_38C	-	no_errors	
MBD1	4152	genome.wustl.edu	37	18	47796443	47796443	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	47796443	47796443	G	C	SNP	MBD1	ENST00000339998	human	ensembl	57_37b	-1	known	missense	c.1591	p.Q531E	0.001	NULL	HMMPfam_MBD,superfamily_DNA-binding_integrase-type,HMMSmart_MBD,HMMPfam_zf-CXXC	-	no_errors	
NHSL2	340527	genome.wustl.edu	37	X	71359816	71359816	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	71359816	71359816	C	T	SNP	NHSL2	NM_001013627	human	genbank	57_37b	+1	provisional	silent	c.1320	p.G440	0.005	NULL	NULL	-	no_errors	
OR2L2	26246	genome.wustl.edu	37	1	248202361	248202361	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248202361	248202361	G	A	SNP	OR2L2	NM_001004686	human	genbank	57_37b	+1	provisional	silent	c.792	p.L264	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OSCP1	127700	genome.wustl.edu	37	1	36887790	36887790	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	36887790	36887790	A	C	SNP	OSCP1	NM_145047	human	genbank	57_37b	-1	validated	missense	c.810	p.H270Q	0.882	NULL	HMMPfam_Oscp1	-	no_errors	
PLXDC1	57125	genome.wustl.edu	37	17	37235707	37235707	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37235707	37235707	G	-	DEL	PLXDC1	ENST00000394318	human	ensembl	57_37b	-1	known	frame_shift_del	c.845	p.S282fs	0.002	NULL	HMMPfam_PSI,HMMSmart_PSI	(deletion:cds_exon[37235697,37235781])	no_errors	
PXDN	7837	genome.wustl.edu	37	2	1653225	1653226	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	1653225	1653226	-	G	INS	PXDN	NM_012293	human	genbank	57_37b	-1	validated	frame_shift_ins	c.2327_2326	p.N776fs	1.000:1.000	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1	-	no_errors	
RYR2	6262	genome.wustl.edu	37	1	237550619	237550619	+	Silent	SNP	C	C	T	rs112680790	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237550619	237550619	C	T	SNP	RYR2	NM_001035	human	genbank	57_37b	+1	reviewed	silent	c.615	p.A205	0.000	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-		
TBX3	6926	genome.wustl.edu	37	12	115118894	115118895	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	115118894	115118895	-	T	INS	TBX3	NM_016569	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.447_446	p.Y149fs	0.891:1.000	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors	
THSD7B	80731	genome.wustl.edu	37	2	137814797	137814797	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	137814797	137814797	T	C	SNP	THSD7B	NM_001080427	human	genbank	57_37b	+1	provisional	missense	c.854	p.L285S	1.000	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-	no_errors	
TLN2	83660	genome.wustl.edu	37	15	63029121	63029121	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	63029121	63029121	C	T	SNP	TLN2	NM_015059	human	genbank	57_37b	+1	reviewed	nonsense	c.3403	p.Q1135*	1.000	NULL	PatternScan_FERM_1,HMMSmart_B41,HMMPfam_FERM_N,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_Talin_cent,HMMPfam_Talin_middle,superfamily_SSF109885,HMMPfam_VBS,HMMSmart_ILWEQ,HMMPfam_I_LWEQ	-	no_errors	
TTC21B	79809	genome.wustl.edu	37	2	166786867	166786867	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	166786867	166786867	C	T	SNP	TTC21B	NM_024753	human	genbank	57_37b	-1	validated	missense	c.902	p.R301H	1.000	superfamily_TPR-like	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179434772	179434772	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179434772	179434772	G	A	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.68377	p.R22793C	1.000	HMMSmart_SM00060,HMMPfam_fn3	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
UGGT1	56886	genome.wustl.edu	37	2	128884987	128884987	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	128884987	128884987	A	G	SNP	UGGT1	NM_020120	human	genbank	57_37b	+1	validated	missense	c.1187	p.N396S	1.000	NULL	HMMPfam_UDP-g_GGTase,superfamily_Nucleotide-diphospho-sugar transferases,PatternScan_ER_TARGET	-	no_errors	
USP17L7	0	genome.wustl.edu	37	8	11990509	11990509	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A0A4-01	TCGA-A8-A0A4-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	11990509	11990509	G	T	SNP	USP17L7	ENST00000416902	human	ensembl	57_37b	-1	known	missense	c.1010	p.S337Y	1.000	superfamily_SSF54001,HMMPfam_UCH	PatternScan_UCH_2_1,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_2	-	no_errors	
