Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAMTS3	9508	genome.wustl.edu	37	4	73179510	73179510	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	73179510	73179510	C	T	SNP	ADAMTS3	NM_014243	human	genbank	57_37b	-1	reviewed	silent	c.1629	p.K543	1.000	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors	
AKD1	221264	genome.wustl.edu	37	6	109820405	109820405	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	109820405	109820405	G	A	SNP	AKD1	ENST00000424296	human	ensembl	57_37b	-1	known	nonsense	c.2125	p.Q709*	0.101	NULL	HMMPfam_YHS,superfamily_SSF52540,HMMPfam_ADK	-	no_errors	
APOH	350	genome.wustl.edu	37	17	64210602	64210602	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	64210602	64210602	A	T	SNP	APOH	NM_000042	human	genbank	57_37b	-1	reviewed	missense	c.951	p.D317E	0.688	HMMPfam_Sushi_2,superfamily_Complement_control_module	superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_Sushi_2	-	no_errors	
ARHGAP21	57584	genome.wustl.edu	37	10	24874774	24874774	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	24874774	24874774	C	G	SNP	ARHGAP21	NM_020824	human	genbank	57_37b	-1	validated	missense	c.4444	p.D1482H	0.008	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
BAT2L2	0	genome.wustl.edu	37	1	171482185	171482185	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	171482185	171482185	G	A	SNP	BAT2L2	NM_015172	human	genbank	57_37b	+1	validated	missense	c.158	p.R53H	1.000	HMMPfam_BAT2_N	HMMPfam_BAT2_N	-	no_errors	
BBX	56987	genome.wustl.edu	37	3	107429348	107429348	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	107429348	107429348	G	C	SNP	BBX	NM_001142568	human	genbank	57_37b	+1	validated	missense	c.41	p.G14A	1.000	NULL	superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_DUF2028	-	no_errors	
C10orf4	118924	genome.wustl.edu	37	10	95459821	95459821	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	95459821	95459821	C	G	SNP	C10orf4	NM_145246	human	genbank	57_37b	-1	validated	missense	c.43	p.E15Q	1.000	NULL	HMMPfam_Fra10Ac1	-	no_errors	
CCDC66	285331	genome.wustl.edu	37	3	56605211	56605211	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	56605211	56605211	G	C	SNP	CCDC66	NM_001141947	human	genbank	57_37b	+1	validated	missense	c.817	p.E273Q	1.000	NULL	NULL	-	no_errors	
CDH1	999	genome.wustl.edu	37	16	68849604	68849604	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68849604	68849604	C	T	SNP	CDH1	NM_004360	human	genbank	57_37b	+1	reviewed	nonsense	c.1507	p.Q503*	0.003	superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
CNTNAP3	79937	genome.wustl.edu	37	9	39109165	39109165	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	39109165	39109165	C	T	SNP	CNTNAP3	NM_033655	human	genbank	57_37b	-1	reviewed	missense	c.2357	p.R786H	0.004	superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,superfamily_Fibrinogen C-terminal domain-like,PatternScan_GLYCO_HORMONE_BETA_1	-	no_errors	
CNTROB	116840	genome.wustl.edu	37	17	7843471	7843471	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7843471	7843471	G	T	SNP	CNTROB	ENST00000380262	human	ensembl	57_37b	+1	known	missense	c.1222	p.V408L	0.629	NULL	NULL	-	no_errors	
COL24A1	255631	genome.wustl.edu	37	1	86578258	86578258	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	86578258	86578258	C	A	SNP	COL24A1	NM_152890	human	genbank	57_37b	-1	validated	missense	c.1591	p.G531C	1.000	HMMPfam_Collagen	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors	
DHX38	9785	genome.wustl.edu	37	16	72141353	72141353	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	72141353	72141353	C	A	SNP	DHX38	NM_014003	human	genbank	57_37b	+1	reviewed	missense	c.2715	p.D905E	1.000	superfamily_SSF52540	HMMSmart_DEXDc,superfamily_SSF52540,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	-	no_errors	
ENSG00000210140	0	genome.wustl.edu	37	MT	5806	5806	+	RNA	SNP	T	T	C	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	MT	5806	5806	T	C	SNP	ENSG00000210140	ENST00000387405	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors	
ENSG00000245346	0	genome.wustl.edu	37	19	37236082	37236083	+	RNA	DEL	TG	TG	-	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	37236082	37236083	TG	-	DEL	ENSG00000245346	ENST00000500002	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.301:0.310	-	-	(deletion:rna[37234387,37240169])	no_errors	
ENSG00000246676	0	genome.wustl.edu	37	12	30782076	30782076	+	RNA	SNP	T	T	C	rs7327	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	30782076	30782076	T	C	SNP	ENSG00000246676	ENST00000499152	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000247765	0	genome.wustl.edu	37	15	21941263	21941263	+	RNA	SNP	A	A	G	rs4984120	byCluster;by2Hit2Allele;byHapMap	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	21941263	21941263	A	G	SNP	ENSG00000247765	ENST00000500487	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.001	-	-	-		
ENSG00000248081	0	genome.wustl.edu	37	9	114982798	114982798	+	RNA	SNP	T	G	G	rs7859107	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	114982798	114982798	T	G	SNP	ENSG00000248081	ENST00000498900	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.072	-	-	-		
EPHB1	2047	genome.wustl.edu	37	3	134884859	134884859	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	134884859	134884859	G	A	SNP	EPHB1	NM_004441	human	genbank	57_37b	+1	reviewed	silent	c.1635	p.S545	0.042	NULL	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors	
EPHB4	2050	genome.wustl.edu	37	7	100410501	100410501	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100410501	100410501	C	T	SNP	EPHB4	NM_004444	human	genbank	57_37b	-1	reviewed	silent	c.1986	p.L662	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_1	-	no_errors	
FBXO18	84893	genome.wustl.edu	37	10	5945069	5945069	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	5945069	5945069	C	T	SNP	FBXO18	NM_032807	human	genbank	57_37b	+1	reviewed	nonsense	c.241	p.Q81*	0.989	NULL	superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52540	-	no_errors	
FLNC	2318	genome.wustl.edu	37	7	128477547	128477547	+	Silent	SNP	T	T	C	rs2291561	byCluster;byFrequency;by1000genomes	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	128477547	128477547	T	C	SNP	FLNC	NM_001458	human	genbank	57_37b	+1	reviewed	silent	c.795	p.G265	0.581	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557	-		
FRMD4A	55691	genome.wustl.edu	37	10	13702348	13702350	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	13702348	13702350	CTT	-	DEL	FRMD4A	NM_018027	human	genbank	57_37b	-1	validated	in_frame_del	c.1866_1864	p.K622in_frame_del	1.000:1.000:1.000	NULL	superfamily_SSF54236,HMMSmart_B41,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,HMMPfam_FERM_C	(deletion:cds_exon[13702316,13702553])	no_errors	
GPC3	2719	genome.wustl.edu	37	X	132887945	132887945	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	132887945	132887945	C	T	SNP	GPC3	NM_004484	human	genbank	57_37b	-1	reviewed	missense	c.596	p.R199Q	1.000	HMMPfam_Glypican	HMMPfam_Glypican,PatternScan_GLYPICAN	-	no_errors	
GRIN3A	116443	genome.wustl.edu	37	9	104335778	104335778	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	104335778	104335778	C	T	SNP	GRIN3A	NM_133445	human	genbank	57_37b	-1	reviewed	missense	c.3026	p.R1009H	0.922	NULL	superfamily_SSF53822,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMSmart_PBPe,HMMPfam_Lig_chan	-	no_errors	
GTF3C4	9329	genome.wustl.edu	37	9	135554618	135554618	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	135554618	135554618	G	A	SNP	GTF3C4	NM_012204	human	genbank	57_37b	+1	validated	missense	c.1612	p.D538N	1.000	NULL	NULL	-	no_errors	
HCG27	253018	genome.wustl.edu	37	6	31170914	31170914	+	RNA	SNP	A	G	G	rs114398697	byCluster;by1000genomes	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31170914	31170914	A	G	SNP	HCG27	NR_026791	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-		
HIST1H2AH	85235	genome.wustl.edu	37	6	27115249	27115249	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	27115249	27115249	C	G	SNP	HIST1H2AH	NM_080596	human	genbank	57_37b	+1	reviewed	silent	c.342	p.A114	1.000	superfamily_Histone-fold,HMMSmart_SM00414	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A	-	no_errors	
IFT88	8100	genome.wustl.edu	37	13	21172808	21172808	+	Missense_Mutation	SNP	A	A	G	rs79793487	byCluster;byFrequency;by1000genomes	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	21172808	21172808	A	G	SNP	IFT88	NM_175605	human	genbank	57_37b	+1	reviewed	missense	c.640	p.S214G	1.000	HMMSmart_SM00028,superfamily_TPR-like	HMMSmart_SM00028,superfamily_TPR-like,HMMSmart_SM00671,HMMPfam_TPR_1	-		
INHBA	3624	genome.wustl.edu	37	7	41739757	41739757	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	41739757	41739757	G	C	SNP	INHBA	NM_002192	human	genbank	57_37b	-1	reviewed	silent	c.216	p.P72	1.000	HMMPfam_TGFb_propeptide	HMMPfam_TGFb_propeptide,superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1	-	no_errors	
ITGAE	3682	genome.wustl.edu	37	17	3656666	3656666	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	3656666	3656666	G	A	SNP	ITGAE	NM_002208	human	genbank	57_37b	-1	reviewed	missense	c.1586	p.T529M	0.987	superfamily_SSF69318,HMMSmart_Int_alpha,HMMPfam_FG-GAP	superfamily_SSF69318,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMSmart_Int_alpha,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors	
KCNB2	9312	genome.wustl.edu	37	8	73848282	73848282	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	73848282	73848282	G	A	SNP	KCNB2	NM_004770	human	genbank	57_37b	+1	reviewed	missense	c.692	p.R231H	0.368	superfamily_SSF81324	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Kv2channel	-	no_errors	
LAMB3	3914	genome.wustl.edu	37	1	209790887	209790887	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	209790887	209790887	C	T	SNP	LAMB3	NM_000228	human	genbank	57_37b	-1	reviewed	missense	c.3096	p.M1032I	0.983	NULL	HMMSmart_LamNT,HMMPfam_Laminin_N,superfamily_Gal_bind_like,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2	-	no_errors	
LOC100287219	0	genome.wustl.edu	37	4	147957464	147957464	+	Missense_Mutation	SNP	A	C	C	rs13116549	byCluster;byFrequency;by1000genomes	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	147957464	147957464	A	C	SNP	LOC100287219	XM_002342471	human	genbank	57_37b	-1	model	missense	c.332	p.L111W	0.000	NULL	NULL	-		
MIR521-2	0	genome.wustl.edu	37	19	54219912	54219912	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54219912	54219912	C	T	SNP	MIR521-2	ENST00000384818	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.085	-	-	-	no_errors	
MUC16	94025	genome.wustl.edu	37	19	9086614	9086614	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9086614	9086614	G	T	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	missense	c.5201	p.S1734Y	0.001	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors	
MUC2	4583	genome.wustl.edu	37	11	1093462	1093462	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1093462	1093462	G	A	SNP	MUC2	NM_002457	human	genbank	57_37b	+1	reviewed	missense	c.5281	p.G1761S	0.000	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMSmart_SM00214,PatternScan_VWFC_1,PatternScan_EGF_1,HMMPfam_VWC,HMMPfam_Cys_knot,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors	
NAV3	89795	genome.wustl.edu	37	12	78515855	78515855	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	78515855	78515855	G	A	SNP	NAV3	NM_014903	human	genbank	57_37b	+1	validated	silent	c.3885	p.T1295	0.999	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	-	no_errors	
NINL	22981	genome.wustl.edu	37	20	25434139	25434139	+	Missense_Mutation	SNP	C	C	T	rs17857107	byCluster;byFrequency;by1000genomes	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	25434139	25434139	C	T	SNP	NINL	NM_025176	human	genbank	57_37b	-1	validated	missense	c.4097	p.R1366H	0.000	NULL	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-		
NTRK2	4915	genome.wustl.edu	37	9	87322806	87322806	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	87322806	87322806	G	A	SNP	NTRK2	NM_006180	human	genbank	57_37b	+1	reviewed	missense	c.407	p.R136H	1.000	superfamily_SSF52058,HMMPfam_LRR_1	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IGc2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors	
PARVA	55742	genome.wustl.edu	37	11	12495366	12495366	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	12495366	12495366	G	A	SNP	PARVA	NM_018222	human	genbank	57_37b	+1	provisional	missense	c.211	p.E71K	1.000	superfamily_Calponin-homology domain CH-domain	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	-	no_errors	
PCLO	27445	genome.wustl.edu	37	7	82538314	82538314	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	82538314	82538314	C	T	SNP	PCLO	NM_033026	human	genbank	57_37b	-1	validated	missense	c.13316	p.R4439H	1.000	NULL	superfamily_FYVE/PHD zinc finger,HMMPfam_zf-piccolo,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PRTG	283659	genome.wustl.edu	37	15	55932020	55932020	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	55932020	55932020	C	T	SNP	PRTG	NM_173814	human	genbank	57_37b	-1	validated	missense	c.2144	p.R715H	0.988	NULL	HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors	
PTK7	5754	genome.wustl.edu	37	6	43111207	43111207	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43111207	43111207	G	T	SNP	PTK7	NM_002821	human	genbank	57_37b	+1	reviewed	missense	c.2100	p.K700N	1.000	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
PVALB	5816	genome.wustl.edu	37	22	37209714	37209714	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	37209714	37209714	C	T	SNP	PVALB	NM_002854	human	genbank	57_37b	-1	reviewed	missense	c.280	p.G94R	1.000	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors	
QSER1	79832	genome.wustl.edu	37	11	32955992	32955992	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	32955992	32955992	C	T	SNP	QSER1	NM_001076786	human	genbank	57_37b	+1	provisional	missense	c.2801	p.P934L	0.138	NULL	NULL	-	no_errors	
RASGRF1	5923	genome.wustl.edu	37	15	79298692	79298692	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	79298692	79298692	G	A	SNP	RASGRF1	NM_002891	human	genbank	57_37b	-1	reviewed	silent	c.1950	p.Y650	0.959	superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF	-	no_errors	
SBNO1	55206	genome.wustl.edu	37	12	123812064	123812064	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	123812064	123812064	C	T	SNP	SBNO1	NM_018183	human	genbank	57_37b	-1	validated	missense	c.1598	p.R533Q	1.000	NULL	NULL	-	no_errors	
SMC1A	8243	genome.wustl.edu	37	X	53439190	53439190	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	53439190	53439190	C	G	SNP	SMC1A	NM_006306	human	genbank	57_37b	-1	reviewed	missense	c.868	p.E290Q	1.000	HMMPfam_SMC_N,superfamily_SSF52540	HMMPfam_SMC_N,superfamily_SSF52540,superfamily_SMC_hinge,HMMPfam_SMC_hinge	-	no_errors	
SNORD72	0	genome.wustl.edu	37	5	40833091	40833091	+	RNA	SNP	T	T	G	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	40833091	40833091	T	G	SNP	SNORD72	ENST00000499388	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
ST5	6764	genome.wustl.edu	37	11	8732399	8732399	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	8732399	8732399	C	T	SNP	ST5	NM_005418	human	genbank	57_37b	-1	reviewed	missense	c.2345	p.R782H	1.000	HMMPfam_uDENN,HMMSmart_SM00800	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801	-	no_errors	
TRPC1	7220	genome.wustl.edu	37	3	142443528	142443528	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	142443528	142443528	G	A	SNP	TRPC1	NM_003304	human	genbank	57_37b	+1	validated	missense	c.127	p.E43K	1.000	superfamily_Ankyrin repeat	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_TRP_2,HMMPfam_Ion_trans	-	no_errors	
UBXN4	23190	genome.wustl.edu	37	2	136519446	136519446	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	136519446	136519446	G	C	SNP	UBXN4	NM_014607	human	genbank	57_37b	+1	validated	missense	c.567	p.Q189H	0.982	NULL	superfamily_Thiordxn-like_fd,HMMSmart_UBX,HMMPfam_UBX,superfamily_SSF54236	-	no_errors	
UROC1	131669	genome.wustl.edu	37	3	126202257	126202257	+	Silent	SNP	G	G	A	rs1687477	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	126202257	126202257	G	A	SNP	UROC1	NM_144639	human	genbank	57_37b	-1	reviewed	silent	c.1845	p.A615	0.059	superfamily_Urocanase,HMMPfam_Urocanase	superfamily_Urocanase,HMMPfam_Urocanase,PatternScan_UROCANASE	-		
USP19	10869	genome.wustl.edu	37	3	49153206	49153206	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49153206	49153206	C	T	SNP	USP19	NM_006677	human	genbank	57_37b	-1	provisional	missense	c.1334	p.R445H	0.990	HMMPfam_DUF1872	superfamily_HSP20-like chaperones,HMMPfam_CS,HMMPfam_DUF1872,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,PatternScan_UCH_2_2	-	no_errors	
ZMYND11	10771	genome.wustl.edu	37	10	292731	292731	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	292731	292731	C	G	SNP	ZMYND11	NM_006624	human	genbank	57_37b	+1	reviewed	missense	c.856	p.Q286E	1.000	superfamily_SSF63748,HMMPfam_PWWP,HMMSmart_PWWP	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,PatternScan_ZF_PHD_1,HMMSmart_RING,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,superfamily_SSF63748,HMMPfam_PWWP,HMMSmart_PWWP,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1	-	no_errors	
ZNF250	58500	genome.wustl.edu	37	8	146107075	146107075	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	146107075	146107075	C	T	SNP	ZNF250	NM_021061	human	genbank	57_37b	-1	validated	missense	c.1508	p.G503D	1.000	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF407	55628	genome.wustl.edu	37	18	72344114	72344114	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A0A9-01	TCGA-A8-A0A9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	72344114	72344114	G	C	SNP	ZNF407	NM_017757	human	genbank	57_37b	+1	reviewed	missense	c.1139	p.R380T	0.033	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00451,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors	
