Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AKAP11	11215	genome.wustl.edu	37	13	42876409	42876409	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	42876409	42876409	G	A	SNP	AKAP11	NM_016248	human	genbank	57_37b	+1	reviewed	missense	c.3527	p.S1176N	0.996	NULL	NULL	-	no_errors	
BRAF	673	genome.wustl.edu	37	7	140439646	140439646	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	140439646	140439646	T	C	SNP	BRAF	NM_004333	human	genbank	57_37b	-1	reviewed	missense	c.2093	p.K698R	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	superfamily_Ubiquitin-like,HMMPfam_RBD,HMMSmart_SM00455,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
CPA2	1358	genome.wustl.edu	37	7	129915037	129915037	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	129915037	129915037	C	A	SNP	CPA2	NM_001869	human	genbank	57_37b	+1	reviewed	missense	c.535	p.H179N	1.000	superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1	superfamily_Protease propeptides/inhibitors,HMMPfam_Propep_M14,superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2	-	no_errors	
CSMD2	114784	genome.wustl.edu	37	1	34123560	34123560	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	34123560	34123560	G	A	SNP	CSMD2	NM_052896	human	genbank	57_37b	-1	validated	missense	c.4313	p.P1438L	1.000	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC	-	no_errors	
ELN	2006	genome.wustl.edu	37	7	73452051	73452051	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	73452051	73452051	G	C	SNP	ELN	NM_000501	human	genbank	57_37b	+1	reviewed	missense	c.178	p.G60R	1.000	NULL	PatternScan_ENDONUCLEASE_III_2,PatternScan_HEXAPEP_TRANSFERASES	-	no_errors	
ENSG00000246438	0	genome.wustl.edu	37	16	1470627	1470628	+	RNA	INS	-	-	G	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1470627	1470628	-	G	INS	ENSG00000246438	ENST00000499181	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.007:0.029	-	-	-	no_errors	
ENSG00000247428	0	genome.wustl.edu	37	16	23424711	23424711	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	23424711	23424711	C	G	SNP	ENSG00000247428	ENST00000501441	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
ENSG00000247682	0	genome.wustl.edu	37	7	5553003	5553003	+	RNA	SNP	G	G	C	rs74646899	byCluster;byFrequency;by1000genomes	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	5553003	5553003	G	C	SNP	ENSG00000247682	ENST00000499067	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001	-	-	-		
ESRP2	80004	genome.wustl.edu	37	16	68266395	68266395	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68266395	68266395	G	T	SNP	ESRP2	NM_024939	human	genbank	57_37b	-1	validated	missense	c.833	p.A278E	1.000	superfamily_SSF54928	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors	
FGF9	2254	genome.wustl.edu	37	13	22255226	22255226	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	22255226	22255226	G	A	SNP	FGF9	NM_002010	human	genbank	57_37b	+1	reviewed	missense	c.323	p.R108Q	1.000	superfamily_Cytokine,HMMSmart_SM00442,HMMPfam_FGF	superfamily_Cytokine,HMMSmart_SM00442,HMMPfam_FGF,PatternScan_HBGF_FGF	-	no_errors	
LOC100289444	0	genome.wustl.edu	37	7	27208959	27208959	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	27208959	27208959	G	-	DEL	LOC100289444	XM_002342713	human	genbank	57_37b	+1	model	frame_shift_del	c.2198	p.L734fs	0.001	NULL	NULL	(deletion:cds_exon[27208926,27209081])	no_errors	
LRRN4	164312	genome.wustl.edu	37	20	6025283	6025283	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	6025283	6025283	G	A	SNP	LRRN4	NM_152611	human	genbank	57_37b	-1	validated	nonsense	c.904	p.Q302*	0.919	superfamily_L domain-like	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors	
MLL3	58508	genome.wustl.edu	37	7	151874090	151874090	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151874090	151874090	G	-	DEL	MLL3	NM_170606	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.8448	p.T2817fs	0.000	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	(deletion:cds_exon[151873276,151875095])	no_errors	
POLR3GL	84265	genome.wustl.edu	37	1	145457994	145457994	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	145457994	145457994	C	T	SNP	POLR3GL	NM_032305	human	genbank	57_37b	-1	provisional	missense	c.266	p.R89H	1.000	NULL	NULL	-	no_errors	
PPP1R3F	89801	genome.wustl.edu	37	X	49126982	49126983	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49126982	49126983	-	G	INS	PPP1R3F	NM_033215	human	genbank	57_37b	+1	validated	frame_shift_ins	c.650_651	p.I217fs	1.000:0.999	HMMPfam_CBM_21	HMMPfam_CBM_21	-	no_errors	
PTGFRN	5738	genome.wustl.edu	37	1	117492009	117492009	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	117492009	117492009	C	T	SNP	PTGFRN	NM_020440	human	genbank	57_37b	+1	provisional	missense	c.1028	p.S343L	0.685	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406,HMMPfam_ig	-	no_errors	
RALGAPA2	57186	genome.wustl.edu	37	20	20517353	20517353	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	20517353	20517353	G	A	SNP	RALGAPA2	NM_020343	human	genbank	57_37b	-1	validated	silent	c.3361	p.L1121	0.836	NULL	superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP	-	no_errors	
SLC2A5	6518	genome.wustl.edu	37	1	9101751	9101751	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	9101751	9101751	G	A	SNP	SLC2A5	NM_001135585	human	genbank	57_37b	-1	validated	missense	c.664	p.L222F	0.000	NULL	superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2	-	no_errors	
SORL1	6653	genome.wustl.edu	37	11	121466411	121466411	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	121466411	121466411	G	T	SNP	SORL1	NM_003105	human	genbank	57_37b	+1	reviewed	silent	c.4449	p.T1483	0.996	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192	superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,HMMSmart_SM00602,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,PatternScan_EGF_2,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,PatternScan_COPPER_BLUE,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	-	no_errors	
TNXB	7148	genome.wustl.edu	37	6	32063513	32063514	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32063513	32063514	AC	-	DEL	TNXB	NM_019105	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.2117_2116	p.V706fs	0.972:0.989	HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2	superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00181,HMMPfam_EGF_2,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like,PatternScan_FIBRIN_AG_C_DOMAIN	(deletion:cds_exon[32063388,32065226])	no_errors	
ZNF791	163049	genome.wustl.edu	37	19	12739046	12739046	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FN-01	TCGA-AN-A0FN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12739046	12739046	G	A	SNP	ZNF791	NM_153358	human	genbank	57_37b	+1	validated	missense	c.703	p.E235K	0.476	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
