Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
A2BP1	54715	genome.wustl.edu	37	16	7629860	7629860	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	7629860	7629860	C	T	SNP	A2BP1	NM_145891	human	genbank	57_37b	+1	reviewed	missense	c.412	p.R138W	1.000	superfamily_SSF54928,HMMSmart_RRM	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors	
ACACA	31	genome.wustl.edu	37	17	35641834	35641834	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	35641834	35641834	G	A	SNP	ACACA	NM_198834	human	genbank	57_37b	-1	reviewed	nonsense	c.376	p.R126*	1.000	NULL	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like,superfamily_SSF56059,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_Rudmnt_hyb_motif,HMMPfam_Biotin_carb_C,superfamily_Hybrid_motif,HMMPfam_Biotin_lipoyl,PatternScan_BIOTIN,HMMPfam_ACC_central,superfamily_SSF52096,HMMPfam_Carboxyl_trans	-	no_errors	
ADAM29	11086	genome.wustl.edu	37	4	175897349	175897349	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	175897349	175897349	C	A	SNP	ADAM29	NM_001130703	human	genbank	57_37b	+1	reviewed	missense	c.673	p.L225I	0.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR"	-	no_errors	
ADAMTS20	80070	genome.wustl.edu	37	12	43824186	43824186	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	43824186	43824186	C	T	SNP	ADAMTS20	NM_025003	human	genbank	57_37b	-1	validated	missense	c.3350	p.C1117Y	1.000	HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_TSP-1 type 1 repeat	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_GON"	-	no_errors	
ARMCX2	9823	genome.wustl.edu	37	X	100910988	100910988	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	100910988	100910988	C	G	SNP	ARMCX2	NM_014782	human	genbank	57_37b	-1	reviewed	missense	c.1587	p.L529F	1.000	superfamily_ARM-type_fold,HMMPfam_DUF634	superfamily_ARM-type_fold,HMMPfam_DUF634	-	no_errors	
ASCC3	10973	genome.wustl.edu	37	6	101073157	101073157	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	101073157	101073157	G	A	SNP	ASCC3	NM_006828	human	genbank	57_37b	-1	validated	missense	c.4696	p.R1566C	1.000	superfamily_SSF52540	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,HMMSmart_AAA,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMSmart_SEC63,HMMPfam_Sec63	-	no_errors	
ASH1L	55870	genome.wustl.edu	37	1	155451295	155451295	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155451295	155451295	G	C	SNP	ASH1L	NM_018489	human	genbank	57_37b	-1	reviewed	missense	c.1366	p.L456V	0.908	NULL	HMMSmart_SM00384,HMMPfam_AT_hook,superfamily_SET domain,HMMSmart_SM00570,HMMPfam_SET,HMMSmart_SM00317,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMPfam_BAH,HMMSmart_SM00439	-	no_errors	
ATP7A	538	genome.wustl.edu	37	X	77289124	77289124	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	77289124	77289124	G	C	SNP	ATP7A	NM_000052	human	genbank	57_37b	+1	reviewed	missense	c.3316	p.G1106R	1.000	superfamily_Calcium ATPase transmembrane domain M,superfamily_HAD-like,HMMPfam_Hydrolase,superfamily_Metal cation-transporting ATPase ATP-binding domain N	superfamily_HMA heavy metal-associated domain,HMMPfam_HMA,PatternScan_HMA_1,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors	
ATRX	546	genome.wustl.edu	37	X	76912112	76912112	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	76912112	76912112	A	T	SNP	ATRX	NM_000489	human	genbank	57_37b	-1	reviewed	missense	c.4152	p.F1384L	1.000	NULL	superfamily_FYVE/PHD zinc finger,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
CD99	4267	genome.wustl.edu	37	X	2641359	2641359	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	2641359	2641359	A	T	SNP	CD99	NM_002414	human	genbank	57_37b	+1	reviewed	missense	c.315	p.K105N	0.001	NULL	NULL	-	no_errors	
CDC42SE2	56990	genome.wustl.edu	37	5	130726778	130726778	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	130726778	130726778	G	A	SNP	CDC42SE2	NM_001038702	human	genbank	57_37b	+1	validated	silent	c.249	p.A83	0.002	NULL	HMMPfam_PBD	-	no_errors	
CNTN6	27255	genome.wustl.edu	37	3	1369212	1369212	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	1369212	1369212	A	T	SNP	CNTN6	NM_014461	human	genbank	57_37b	+1	reviewed	missense	c.1155	p.Q385H	0.983	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors	
CYTSB	92521	genome.wustl.edu	37	17	20135652	20135652	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	20135652	20135652	G	A	SNP	CYTSB	NM_001033553	human	genbank	57_37b	+1	validated	missense	c.2285	p.R762Q	0.949	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	-	no_errors	
DGAT2L6	347516	genome.wustl.edu	37	X	69424167	69424167	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	69424167	69424167	C	G	SNP	DGAT2L6	NM_198512	human	genbank	57_37b	+1	provisional	silent	c.660	p.V220	0.988	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors	
ENGASE	64772	genome.wustl.edu	37	17	77079103	77079103	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	77079103	77079103	C	T	SNP	ENGASE	NM_001042573	human	genbank	57_37b	+1	validated	missense	c.1040	p.S347L	1.000	HMMPfam_Glyco_hydro_85	HMMPfam_Glyco_hydro_85	-	no_errors	
ERCC6	2074	genome.wustl.edu	37	10	50684343	50684343	+	Missense_Mutation	SNP	C	C	T	rs56397747	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	50684343	50684343	C	T	SNP	ERCC6	NM_000124	human	genbank	57_37b	-1	reviewed	missense	c.2300	p.R767H	1.000	HMMPfam_SNF2_N	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C	-		
FAM186A	121006	genome.wustl.edu	37	12	50748009	50748009	+	Missense_Mutation	SNP	T	T	C	rs115929134	by1000genomes	TCGA-AO-A03O-01	TCGA-AO-A03O-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	50748009	50748009	T	C	SNP	FAM186A	NM_001145475	human	genbank	57_37b	-1	provisional	missense	c.2606	p.Q869R	0.010	NULL	NULL	-		
FAM47C	442444	genome.wustl.edu	37	X	37027607	37027607	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	37027607	37027607	T	A	SNP	FAM47C	NM_001013736	human	genbank	57_37b	+1	provisional	missense	c.1124	p.V375E	0.024	NULL	NULL	-	no_errors	
FIGN	55137	genome.wustl.edu	37	2	164466086	164466086	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	164466086	164466086	G	C	SNP	FIGN	NM_018086	human	genbank	57_37b	-1	validated	missense	c.2256	p.N752K	1.000	NULL	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,PatternScan_AAA	-	no_errors	
FPR3	2359	genome.wustl.edu	37	19	52327516	52327516	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52327516	52327516	G	A	SNP	FPR3	NM_002030	human	genbank	57_37b	+1	validated	missense	c.515	p.G172E	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
GABRG1	2565	genome.wustl.edu	37	4	46060587	46060587	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	46060587	46060587	T	C	SNP	GABRG1	NM_173536	human	genbank	57_37b	-1	reviewed	silent	c.678	p.E226	1.000	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors	
GPR26	2849	genome.wustl.edu	37	10	125447554	125447554	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	125447554	125447554	C	T	SNP	GPR26	NM_153442	human	genbank	57_37b	+1	validated	nonsense	c.892	p.R298*	1.000	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
GPR64	10149	genome.wustl.edu	37	X	19017264	19017264	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	19017264	19017264	C	G	SNP	GPR64	NM_001079858	human	genbank	57_37b	-1	validated	missense	c.2464	p.G822R	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2	HMMPfam_GPS,HMMSmart_SM00303,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
HTR1B	3351	genome.wustl.edu	37	6	78172233	78172233	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	78172233	78172233	G	A	SNP	HTR1B	NM_000863	human	genbank	57_37b	-1	provisional	silent	c.888	p.D296	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
IARS	3376	genome.wustl.edu	37	9	94985652	94985652	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	94985652	94985652	G	A	SNP	IARS	NM_002161	human	genbank	57_37b	-1	reviewed	nonsense	c.3529	p.Q1177*	1.000	NULL	superfamily_SSF52374,HMMPfam_tRNA-synt_1,PatternScan_AA_TRNA_LIGASE_I,superfamily_ValRS_IleRS_edit,superfamily_tRNAsyn_1a_bind,HMMPfam_Anticodon_1	-	no_errors	
INPP4B	8821	genome.wustl.edu	37	4	143181675	143181675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	143181675	143181675	C	T	SNP	INPP4B	NM_001101669	human	genbank	57_37b	-1	reviewed	missense	c.658	p.G220R	0.003	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors	
KIAA0430	9665	genome.wustl.edu	37	16	15724259	15724259	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	15724259	15724259	T	A	SNP	KIAA0430	NM_014647	human	genbank	57_37b	-1	validated	missense	c.1454	p.H485L	1.000	HMMPfam_DUF537	HMMPfam_DUF537,superfamily_RNA-binding domain RBD,HMMSmart_SM00360	-	no_errors	
KIAA0895	23366	genome.wustl.edu	37	7	36396564	36396564	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	36396564	36396564	G	C	SNP	KIAA0895	NM_001100425	human	genbank	57_37b	-1	validated	missense	c.814	p.L272V	0.834	NULL	NULL	-	no_errors	
KLHL28	54813	genome.wustl.edu	37	14	45414398	45414398	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	45414398	45414398	C	T	SNP	KLHL28	NM_017658	human	genbank	57_37b	-1	validated	missense	c.734	p.R245H	1.000	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1	-	no_errors	
KLRA1	10748	genome.wustl.edu	37	12	10746545	10746545	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	10746545	10746545	G	C	SNP	KLRA1	ENST00000023165	human	ensembl	57_37b	-1	known	missense	c.502	p.Q168E	0.000	superfamily_C-type_lectin_fold	HMMPfam_Ly49,superfamily_C-type_lectin_fold	-	no_errors	
KRT1	3848	genome.wustl.edu	37	12	53071201	53071201	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53071201	53071201	G	A	SNP	KRT1	NM_006121	human	genbank	57_37b	-1	reviewed	missense	c.1027	p.R343C	1.000	HMMPfam_Filament	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors	
LAS1L	81887	genome.wustl.edu	37	X	64737980	64737980	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	64737980	64737980	C	G	SNP	LAS1L	NM_031206	human	genbank	57_37b	-1	validated	missense	c.1814	p.R605T	0.029	NULL	HMMPfam_Las1	-	no_errors	
LCMT2	9836	genome.wustl.edu	37	15	43621247	43621247	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43621247	43621247	G	A	SNP	LCMT2	NM_014793	human	genbank	57_37b	-1	reviewed	missense	c.1441	p.R481W	0.999	superfamily_Gal_oxid_central,HMMPfam_Kelch_2	superfamily_SSF53335,HMMPfam_LCM,superfamily_Gal_oxid_central,HMMPfam_Kelch_2	-	no_errors	
LOC100287161	0	genome.wustl.edu	37	22	24656748	24656748	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	24656748	24656748	T	C	SNP	LOC100287161	XM_002343792	human	genbank	57_37b	-1	model	missense	c.343	p.I115V	1.000	HMMSmart_SM00324,superfamily_GTPase activation domain GAP	HMMSmart_SM00324,superfamily_GTPase activation domain GAP,HMMPfam_RhoGAP	-	no_errors	
MAGEA11	4110	genome.wustl.edu	37	X	148770497	148770497	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	148770497	148770497	G	T	SNP	MAGEA11	NM_001011544	human	genbank	57_37b	+1	reviewed	splice_site	c.1-1	e1-1	0.017	-	-	-	no_errors	
MALAT1	378938	genome.wustl.edu	37	11	65266621	65266621	+	RNA	SNP	C	C	G	rs11547521	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65266621	65266621	C	G	SNP	MALAT1	NR_002819	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.000	-	-	-		
MCM3AP	8888	genome.wustl.edu	37	21	47664999	47664999	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47664999	47664999	C	T	SNP	MCM3AP	NM_003906	human	genbank	57_37b	-1	reviewed	missense	c.4760	p.R1587H	0.992	NULL	superfamily_SSF54928,HMMPfam_SAC3_GANP	-	no_errors	
MFSD9	84804	genome.wustl.edu	37	2	103334999	103334999	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	103334999	103334999	C	G	SNP	MFSD9	NM_032718	human	genbank	57_37b	-1	validated	missense	c.1305	p.E435D	0.998	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors	
MICAL3	57553	genome.wustl.edu	37	22	18384696	18384696	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	18384696	18384696	C	A	SNP	MICAL3	NM_015241	human	genbank	57_37b	-1	provisional	missense	c.639	p.E213D	1.000	superfamily_FAD/NAD(P)-binding domain	HMMPfam_FAD_binding_3,superfamily_FAD/NAD(P)-binding domain,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors	
MLL5	55904	genome.wustl.edu	37	7	104752839	104752847	+	In_Frame_Del	DEL	CCTCCACCT	CCTCCACCT	-	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	CCTCCACCT	CCTCCACCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	104752839	104752847	CCTCCACCT	-	DEL	MLL5	NM_018682	human	genbank	57_37b	+1	reviewed	in_frame_del	c.4636_4644	p.PPP1549in_frame_del	0.990:0.992:0.874:0.998:0.999:0.917:1.000:1.000:0.971	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain	(deletion:cds_exon[104752272,104753780])	no_errors	
OR5AK2	390181	genome.wustl.edu	37	11	56757155	56757155	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	56757155	56757155	C	T	SNP	OR5AK2	NM_001005323	human	genbank	57_37b	+1	provisional	missense	c.767	p.S256F	0.001	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
OSMR	9180	genome.wustl.edu	37	5	38885552	38885552	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	38885552	38885552	A	C	SNP	OSMR	NM_003999	human	genbank	57_37b	+1	reviewed	missense	c.805	p.K269Q	0.000	superfamily_Fibronectin type III	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_HEMATOPO_REC_L_F2	-	no_errors	
PBX1	5087	genome.wustl.edu	37	1	164776849	164776849	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	164776849	164776849	A	T	SNP	PBX1	NM_002585	human	genbank	57_37b	+1	validated	missense	c.772	p.N258Y	1.000	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	HMMPfam_PBC,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
PCDHGA3	56112	genome.wustl.edu	37	5	140724179	140724179	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140724179	140724179	G	A	SNP	PCDHGA3	NM_018916	human	genbank	57_37b	+1	reviewed	silent	c.579	p.E193	0.987	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178916944	178916952	+	In_Frame_Del	DEL	AAGATCCTC	AAGATCCTC	-	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	AAGATCCTC	AAGATCCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178916944	178916952	AAGATCCTC	-	DEL	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	in_frame_del	c.331_339	p.KIL111in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_SSF54236	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	(deletion:cds_exon[178916614,178916965])	no_errors	
PLXNC1	10154	genome.wustl.edu	37	12	94563009	94563009	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	94563009	94563009	C	T	SNP	PLXNC1	NM_005761	human	genbank	57_37b	+1	provisional	silent	c.1143	p.G381	1.000	superfamily_Sema	superfamily_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,HMMPfam_TIG,HMMSmart_IPT,HMMPfam_Plexin_cytopl,superfamily_Rho_GAP	-	no_errors	
PON2	5445	genome.wustl.edu	37	7	95041063	95041063	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	95041063	95041063	G	T	SNP	PON2	NM_000305	human	genbank	57_37b	-1	reviewed	missense	c.396	p.N132K	1.000	superfamily_SSF63829	superfamily_SSF63829,HMMPfam_Arylesterase	-	no_errors	
RBBP9	10741	genome.wustl.edu	37	20	18474608	18474608	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	18474608	18474608	G	T	SNP	RBBP9	NM_006606	human	genbank	57_37b	-1	reviewed	missense	c.242	p.A81D	1.000	superfamily_alpha/beta-Hydrolases,HMMPfam_DUF1234	superfamily_alpha/beta-Hydrolases,HMMPfam_DUF1234	-	no_errors	
RGL3	57139	genome.wustl.edu	37	19	11512791	11512791	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11512791	11512791	G	C	SNP	RGL3	NM_001035223	human	genbank	57_37b	-1	validated	silent	c.1380	p.A460	0.995	superfamily_Ras GEF,HMMSmart_SM00147	superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF,superfamily_Ubiquitin-like,HMMSmart_SM00314,HMMPfam_RA	-	no_errors	
RUNX1	861	genome.wustl.edu	37	21	36206845	36206861	+	Frame_Shift_Del	DEL	CGGAAAAGGACAAGCTC	CGGAAAAGGACAAGCTC	-	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	CGGAAAAGGACAAGCTC	CGGAAAAGGACAAGCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	36206845	36206861	CGGAAAAGGACAAGCTC	-	DEL	RUNX1	NM_001754	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.667_651	p.S218fs	1.000:0.984:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_Runt,superfamily_p53-like transcription factors,HMMPfam_RunxI	(deletion:cds_exon[36206707,36206898])	no_errors	
SEMA5A	9037	genome.wustl.edu	37	5	9063053	9063053	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	9063053	9063053	G	T	SNP	SEMA5A	NM_003966	human	genbank	57_37b	-1	reviewed	missense	c.2464	p.P822T	1.000	superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1	-	no_errors	
SFI1	9814	genome.wustl.edu	37	22	31971257	31971260	+	Frame_Shift_Del	DEL	ATAC	ATAC	-	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	ATAC	ATAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	31971257	31971260	ATAC	-	DEL	SFI1	NM_001007467	human	genbank	57_37b	+1	validated	frame_shift_del	c.963_966	p.Y322fs	0.006:0.016:0.395:0.766	NULL	NULL	(deletion:cds_exon[31971217,31971378])	no_errors	
SIN3A	25942	genome.wustl.edu	37	15	75688794	75688794	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	75688794	75688794	A	G	SNP	SIN3A	NM_001145357	human	genbank	57_37b	-1	reviewed	missense	c.1898	p.L633P	1.000	HMMPfam_HDAC_interact,HMMSmart_HDAC_interact	superfamily_PAH,HMMPfam_PAH,HMMPfam_HDAC_interact,HMMSmart_HDAC_interact	-	no_errors	
SLCO1B3	28234	genome.wustl.edu	37	12	21033820	21033820	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	21033820	21033820	C	G	SNP	SLCO1B3	NM_019844	human	genbank	57_37b	+1	validated	missense	c.1363	p.P455A	0.751	superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP,superfamily_SSF100895	superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2	-	no_errors	
SYMPK	8189	genome.wustl.edu	37	19	46330823	46330823	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46330823	46330823	C	T	SNP	SYMPK	NM_004819	human	genbank	57_37b	-1	reviewed	missense	c.2126	p.R709H	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
TFCP2	7024	genome.wustl.edu	37	12	51501078	51501078	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	51501078	51501078	G	A	SNP	TFCP2	NM_005653	human	genbank	57_37b	-1	provisional	nonsense	c.769	p.R257*	1.000	HMMPfam_CP2	HMMPfam_CP2,superfamily_SAM/Pointed domain	-	no_errors	
TMC5	79838	genome.wustl.edu	37	16	19490813	19490813	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	19490813	19490813	T	A	SNP	TMC5	NM_001105248	human	genbank	57_37b	+1	validated	missense	c.2230	p.S744T	0.833	HMMPfam_TMC	HMMPfam_TMC	-	no_errors	
TMEM43	79188	genome.wustl.edu	37	3	14170983	14170983	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	14170983	14170983	G	A	SNP	TMEM43	NM_024334	human	genbank	57_37b	+1	reviewed	silent	c.84	p.R28	0.997	NULL	HMMPfam_DUF1625	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578406	7578406	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.524	p.R175H	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-		
TP53BP1	7158	genome.wustl.edu	37	15	43708431	43708431	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43708431	43708431	A	C	SNP	TP53BP1	NM_001141980	human	genbank	57_37b	-1	validated	missense	c.4865	p.I1622S	1.000	NULL	HMMPfam_53-BP1_Tudor,superfamily_SSF63748,HMMSmart_BRCT,superfamily_BRCT,HMMPfam_BRCT	-	no_errors	
TRA2B	6434	genome.wustl.edu	37	3	185641773	185641773	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	185641773	185641773	C	G	SNP	TRA2B	NM_004593	human	genbank	57_37b	-1	validated	splice_site	c.334-1	e4-1	1.000	-	-	-	no_errors	
TRIM5	85363	genome.wustl.edu	37	11	5686577	5686582	+	In_Frame_Del	DEL	TCAGAA	TCAGAA	-	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	TCAGAA	TCAGAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	5686577	5686582	TCAGAA	-	DEL	TRIM5	NM_033034	human	genbank	57_37b	-1	reviewed	in_frame_del	c.944_939	p.SE314in_frame_del	0.000:0.000:0.031:0.036:0.032:0.041	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMSmart_SM00449	(deletion:cds_exon[5686039,5686625])	no_errors	
UBE2D2	7322	genome.wustl.edu	37	5	138994342	138994342	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	138994342	138994342	C	T	SNP	UBE2D2	NM_003339	human	genbank	57_37b	+1	reviewed	missense	c.181	p.P61S	1.000	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con,PatternScan_UBIQUITIN_CONJUGAT_1	-	no_errors	
USP11	8237	genome.wustl.edu	37	X	47104088	47104088	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	47104088	47104088	C	T	SNP	USP11	NM_004651	human	genbank	57_37b	+1	reviewed	silent	c.1980	p.D660	0.000	superfamily_SSF54001,HMMPfam_UCH	HMMSmart_DUSP,HMMPfam_DUF1055,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
VGLL3	389136	genome.wustl.edu	37	3	87017995	87017995	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	87017995	87017995	G	A	SNP	VGLL3	NM_016206	human	genbank	57_37b	-1	validated	missense	c.682	p.R228W	1.000	NULL	HMMPfam_Vg_Tdu,HMMSmart_SM00711	-	no_errors	
VPS13B	157680	genome.wustl.edu	37	8	100160153	100160153	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	100160153	100160153	T	C	SNP	VPS13B	NM_017890	human	genbank	57_37b	+1	reviewed	missense	c.1928	p.V643A	1.000	NULL	PatternScan_ZINC_PROTEASE	-	no_errors	
ZNF366	167465	genome.wustl.edu	37	5	71752236	71752236	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	71752236	71752236	A	T	SNP	ZNF366	NM_152625	human	genbank	57_37b	-1	provisional	missense	c.1519	p.C507S	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF532	55205	genome.wustl.edu	37	18	56586762	56586762	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03O-01	TCGA-AO-A03O-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	56586762	56586762	G	A	SNP	ZNF532	NM_018181	human	genbank	57_37b	+1	validated	missense	c.1243	p.V415I	0.972	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors	
