Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AHDC1	27245	genome.wustl.edu	37	1	27876482	27876482	+	Silent	SNP	C	C	A	rs2076457	byCluster;byFrequency;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	27876482	27876482	C	A	SNP	AHDC1	NM_001029882	human	genbank	57_37b	-1	validated	silent	c.2145	p.P715	0.024	NULL	HMMSmart_AT_hook,HMMPfam_AT_hook	-		
AP3D1	8943	genome.wustl.edu	37	19	2114127	2114127	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AO-A03U-01	TCGA-AO-A03U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	2114127	2114127	C	-	DEL	AP3D1	NM_003938	human	genbank	57_37b	-1	validated	frame_shift_del	c.2598	p.K867fs	0.158	HMMPfam_BLVR	superfamily_ARM repeat,HMMPfam_Adaptin_N,HMMPfam_BLVR	(deletion:cds_exon[2114124,2114301])	no_errors	
BAD	572	genome.wustl.edu	37	11	64039175	64039175	+	Missense_Mutation	SNP	G	G	A	rs2286615	byCluster;byFrequency;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64039175	64039175	G	A	SNP	BAD	ENST00000394531	human	ensembl	57_37b	-1	known	missense	c.428	p.A143V	1.000	HMMPfam_Bcl-2_BAD	HMMPfam_Bcl-2_BAD	-		
C20orf96	140680	genome.wustl.edu	37	20	259818	259818	+	Silent	SNP	G	A	A	rs6035541	byCluster;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	259818	259818	G	A	SNP	C20orf96	NM_153269	human	genbank	57_37b	-1	predicted	silent	c.460	p.L154	0.000	NULL	NULL	-		
C21orf125	284836	genome.wustl.edu	37	21	44871682	44871682	+	RNA	SNP	A	C	C	rs229355	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	44871682	44871682	A	C	SNP	C21orf125	NR_026960	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.000	-	-	-		
C2orf16	84226	genome.wustl.edu	37	2	27803312	27803312	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A03U-01	TCGA-AO-A03U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27803312	27803312	G	C	SNP	C2orf16	NM_032266	human	genbank	57_37b	+1	validated	missense	c.3873	p.K1291N	0.063	NULL	NULL	-	no_errors	
C5orf60	285679	genome.wustl.edu	37	5	179071958	179071958	+	Missense_Mutation	SNP	C	C	G	rs7731123	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	179071958	179071958	C	G	SNP	C5orf60	NM_001142306	human	genbank	57_37b	-1	predicted	missense	c.64	p.D22H	0.027	NULL	NULL	-		
C8orf73	642475	genome.wustl.edu	37	8	144654255	144654255	+	Missense_Mutation	SNP	A	A	G	rs4874153	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144654255	144654255	A	G	SNP	C8orf73	NM_001100878	human	genbank	57_37b	-1	validated	missense	c.395	p.V132A	0.239	NULL	superfamily_ARM-type_fold	-		
C9orf86	55684	genome.wustl.edu	37	9	139731969	139731969	+	Silent	SNP	C	C	T	rs2811742	byCluster;by2Hit2Allele	TCGA-AO-A03U-01	TCGA-AO-A03U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139731969	139731969	C	T	SNP	C9orf86	NM_024718	human	genbank	57_37b	+1	validated	silent	c.981	p.A327	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Miro	-		
CYP2A7P1	0	genome.wustl.edu	37	19	41532005	41532005	+	Missense_Mutation	SNP	G	G	A	rs434606	byCluster;byFrequency;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41532005	41532005	G	A	SNP	CYP2A7P1	ENST00000301171	human	ensembl	57_37b	-1	known	missense	c.401	p.T134I	0.992	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450	-		
DCAF13	25879	genome.wustl.edu	37	8	104427578	104427578	+	Silent	SNP	T	T	C	rs3134297	byCluster;byFrequency;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	104427578	104427578	T	C	SNP	DCAF13	NM_015420	human	genbank	57_37b	+1	validated	silent	c.360	p.S120	0.922	NULL	superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMSmart_WD40,HMMPfam_Sof1	-		
DIO3OS	64150	genome.wustl.edu	37	14	102021556	102021556	+	RNA	SNP	G	G	T	rs115009049	by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	102021556	102021556	G	T	SNP	DIO3OS	NR_002770	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.000	-	-	-		
ENSG00000206192	0	genome.wustl.edu	37	13	19317503	19317503	+	Silent	SNP	T	T	C	rs58051099	byCluster	TCGA-AO-A03U-01	TCGA-AO-A03U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	19317503	19317503	T	C	SNP	ENSG00000206192	ENST00000443000	human	ensembl	57_37b	-1	known	silent	c.663	p.*221	0.003	NULL	NULL	-		
ENSG00000247188	0	genome.wustl.edu	37	2	74643418	74643418	+	RNA	DEL	G	G	-	novel	unknown	TCGA-AO-A03U-01	TCGA-AO-A03U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74643418	74643418	G	-	DEL	ENSG00000247188	ENST00000502147	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	(deletion:rna[74642574,74643692])	no_errors	
ENSG00000247630	0	genome.wustl.edu	37	1	36180629	36180629	+	RNA	DEL	G	G	-	novel	unknown	TCGA-AO-A03U-01	TCGA-AO-A03U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	36180629	36180629	G	-	DEL	ENSG00000247630	ENST00000499167	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	(deletion:rna[36179479,36181873])	no_errors	
ENSG00000247827	0	genome.wustl.edu	37	6	149705635	149705635	+	RNA	SNP	T	C	C	rs11155647	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	149705635	149705635	T	C	SNP	ENSG00000247827	ENST00000498866	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
FAM70B	348013	genome.wustl.edu	37	13	114504663	114504663	+	Missense_Mutation	SNP	G	G	A	rs41284482	unknown	TCGA-AO-A03U-01	TCGA-AO-A03U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	114504663	114504663	G	A	SNP	FAM70B	NM_182614	human	genbank	57_37b	+1	provisional	missense	c.547	p.V183I	0.984	NULL	NULL	-		
FLJ42393	401105	genome.wustl.edu	37	3	187897954	187897954	+	RNA	SNP	T	T	A	rs2127519	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	187897954	187897954	T	A	SNP	FLJ42393	NR_024413	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.003	-	-	-		
FOXM1	2305	genome.wustl.edu	37	12	2968169	2968169	+	Missense_Mutation	SNP	A	A	G	rs3742076	byCluster;byFrequency;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	2968169	2968169	A	G	SNP	FOXM1	NM_202002	human	genbank	57_37b	-1	validated	missense	c.2041	p.S681P	0.970	NULL	"HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-		
GAB4	128954	genome.wustl.edu	37	22	17446991	17446991	+	Silent	SNP	C	C	T	rs4819925	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	17446991	17446991	C	T	SNP	GAB4	NM_001037814	human	genbank	57_37b	-1	provisional	silent	c.1287	p.K429	1.000	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-		
GPR98	84059	genome.wustl.edu	37	5	89990148	89990149	+	Frame_Shift_Del	DEL	TA	TA	-	novel	unknown	TCGA-AO-A03U-01	TCGA-AO-A03U-01	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	89990148	89990149	TA	-	DEL	GPR98	NM_032119	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.7575_7576	p.I2526fs	0.154:0.184	NULL	HMMSmart_SM00237,HMMPfam_Calx-beta,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP,PatternScan_A_DEAMINASE,PatternScan_LIPOYL,HMMPfam_GPS	(deletion:cds_exon[89989707,89990518])	no_errors	
GPRIN2	9721	genome.wustl.edu	37	10	46999863	46999863	+	Missense_Mutation	SNP	C	C	G	rs4445576	byCluster;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	46999863	46999863	C	G	SNP	GPRIN2	NM_014696	human	genbank	57_37b	+1	validated	missense	c.983	p.S328C	0.016	NULL	NULL	-		
KIAA1755	85449	genome.wustl.edu	37	20	36845738	36845738	+	Missense_Mutation	SNP	C	C	T	rs760998	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	36845738	36845738	C	T	SNP	KIAA1755	NM_001029864	human	genbank	57_37b	-1	predicted	missense	c.2818	p.E940K	0.295	NULL	superfamily_Spectrin repeat	-		
LOC100130342	0	genome.wustl.edu	37	19	35136617	35136617	+	Silent	SNP	C	C	T	rs7260033	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	35136617	35136617	C	T	SNP	LOC100130342	XM_001718878	human	genbank	57_37b	+1	model	silent	c.51	p.S17	0.072	NULL	NULL	-		
LOC100132713	0	genome.wustl.edu	37	18	76264394	76264394	+	Missense_Mutation	SNP	G	G	A	rs278810	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	76264394	76264394	G	A	SNP	LOC100132713	XM_001714438	human	genbank	57_37b	+1	model	missense	c.683	p.G228D	0.002	NULL	NULL	-		
LOC100288406	0	genome.wustl.edu	37	12	92260	92260	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A03U-01	TCGA-AO-A03U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	92260	92260	G	C	SNP	LOC100288406	XM_002343141	human	genbank	57_37b	+1	model	missense	c.284	p.R95T	0.351	NULL	NULL	-	no_errors	
LOC154449	154449	genome.wustl.edu	37	6	170563646	170563646	+	RNA	SNP	T	T	C	rs3012423	byCluster;byFrequency;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	170563646	170563646	T	C	SNP	LOC154449	NR_002787	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.361	-	-	-		
LOC402198	0	genome.wustl.edu	37	5	14960628	14960628	+	Missense_Mutation	SNP	T	T	G	rs835112	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	14960628	14960628	T	G	SNP	LOC402198	XM_001716525	human	genbank	57_37b	+1	model	missense	c.727	p.F243V	1.000	NULL	superfamily_PurM C-terminal domain-like,HMMPfam_AIRS_C	-		
LOC729862	729862	genome.wustl.edu	37	5	28926651	28926651	+	RNA	SNP	T	T	C	rs459832	byCluster;by2Hit2Allele;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	28926651	28926651	T	C	SNP	LOC729862	XR_040872	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.027	-	-	-		
MAPK15	225689	genome.wustl.edu	37	8	144801593	144801593	+	Missense_Mutation	SNP	C	C	A	rs60732298	byCluster;byFrequency;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144801593	144801593	C	A	SNP	MAPK15	NM_139021	human	genbank	57_37b	+1	validated	missense	c.662	p.T221K	0.993	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_MAPK	-		
MEOX1	4222	genome.wustl.edu	37	17	41738823	41738823	+	Missense_Mutation	SNP	G	G	A	rs9898682	byCluster;byFrequency;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	41738823	41738823	G	A	SNP	MEOX1	NM_004527	human	genbank	57_37b	-1	reviewed	missense	c.80	p.S27L	0.998	NULL	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-		
MON1A	84315	genome.wustl.edu	37	3	49949071	49949071	+	Silent	SNP	A	A	G	rs868891	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49949071	49949071	A	G	SNP	MON1A	NM_032355	human	genbank	57_37b	-1	validated	silent	c.792	p.P264	0.104	HMMPfam_Mon1	HMMPfam_Mon1	-		
MYO7B	4648	genome.wustl.edu	37	2	128388790	128388790	+	Silent	SNP	G	G	A	rs13025791	byCluster;byFrequency;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	128388790	128388790	G	A	SNP	MYO7B	NM_001080527	human	genbank	57_37b	+1	provisional	silent	c.4869	p.E1623	0.722	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMSmart_SM00139,HMMPfam_MyTH4,HMMSmart_SM00295,superfamily_Second domain of FERM,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMPfam_FERM_M	-		
OBSCN	84033	genome.wustl.edu	37	1	228528563	228528563	+	Missense_Mutation	SNP	C	C	G	rs1188710	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228528563	228528563	C	G	SNP	OBSCN	NM_001098623	human	genbank	57_37b	+1	reviewed	missense	c.17671	p.Q5891E	1.000	superfamily_PH domain-like	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-		
OSBP2	23762	genome.wustl.edu	37	22	31091139	31091139	+	Silent	SNP	A	A	G	rs13053290	byCluster;by2Hit2Allele;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	31091139	31091139	A	G	SNP	OSBP2	NM_030758	human	genbank	57_37b	+1	reviewed	silent	c.243	p.E81	0.018	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_Oxysterol_BP,PatternScan_OSBP	-		
PCDHA8	56140	genome.wustl.edu	37	5	140222641	140222641	+	Missense_Mutation	SNP	A	A	G	rs6580012	byCluster;by2Hit2Allele;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140222641	140222641	A	G	SNP	PCDHA8	NM_018911	human	genbank	57_37b	+1	reviewed	missense	c.1735	p.K579E	0.003	superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-		
PIGQ	9091	genome.wustl.edu	37	16	624101	624101	+	Silent	SNP	G	G	A	rs61753370	byCluster	TCGA-AO-A03U-01	TCGA-AO-A03U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	624101	624101	G	A	SNP	PIGQ	NM_148920	human	genbank	57_37b	+1	reviewed	silent	c.27	p.T9	0.542	NULL	HMMPfam_Gpi1	-		
PJA2	9867	genome.wustl.edu	37	5	108698676	108698676	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A03U-01	TCGA-AO-A03U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	108698676	108698676	T	C	SNP	PJA2	NM_014819	human	genbank	57_37b	-1	validated	missense	c.1517	p.N506S	1.000	NULL	PatternScan_N6_MTASE,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	-	no_errors	
PLK5P	126520	genome.wustl.edu	37	19	1525307	1525307	+	RNA	SNP	G	G	A	rs2292449	byCluster;byFrequency;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1525307	1525307	G	A	SNP	PLK5P	NR_026557	human	genbank	57_37b	+1	validated	rna	NULL	NULL	1.000	-	-	-		
PLXNB2	23654	genome.wustl.edu	37	22	50722134	50722134	+	Missense_Mutation	SNP	T	T	C	rs11547731	byCluster;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50722134	50722134	T	C	SNP	PLXNB2	NM_012401	human	genbank	57_37b	-1	validated	missense	c.2467	p.I823V	1.000	HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_IPT,HMMSmart_PSI,superfamily_Rho_GAP,HMMPfam_Plexin_cytopl,superfamily_Ig_E-set,superfamily_Plexin-like_fold	-		
POLDIP3	84271	genome.wustl.edu	37	22	43010817	43010817	+	Missense_Mutation	SNP	G	G	A	rs28627172	byCluster;byFrequency;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	43010817	43010817	G	A	SNP	POLDIP3	NM_032311	human	genbank	57_37b	-1	reviewed	missense	c.47	p.A16V	0.101	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-		
RELT	84957	genome.wustl.edu	37	11	73106237	73106237	+	Silent	SNP	A	A	C	rs11544311	byCluster;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	73106237	73106237	A	C	SNP	RELT	NM_032871	human	genbank	57_37b	+1	reviewed	silent	c.1152	p.P384	0.097	NULL	PatternScan_TNFR_NGFR_1,HMMSmart_TNFR	-		
RPS27L	51065	genome.wustl.edu	37	15	63448632	63448633	+	In_Frame_Ins	INS	-	-	TAC	novel	unknown	TCGA-AO-A03U-01	TCGA-AO-A03U-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	63448632	63448633	-	TAC	INS	RPS27L	NM_015920	human	genbank	57_37b	-1	reviewed	in_frame_ins	c.95_94	p.F32in_frame_insCI	1.000:1.000	HMMPfam_Ribosomal_S27e,superfamily_Zn-binding ribosomal proteins	HMMPfam_Ribosomal_S27e,superfamily_Zn-binding ribosomal proteins,PatternScan_RIBOSOMAL_S27E	-	no_errors	
TAS1R2	80834	genome.wustl.edu	37	1	19181082	19181082	+	Silent	SNP	A	A	C	rs28470550	byCluster;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19181082	19181082	A	C	SNP	TAS1R2	NM_152232	human	genbank	57_37b	-1	validated	silent	c.882	p.T294	0.009	superfamily_SSF53822,HMMPfam_ANF_receptor	PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822,HMMPfam_ANF_receptor,HMMPfam_NCD3G,superfamily_SSF57586,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3	-		
TAS1R2	80834	genome.wustl.edu	37	1	19181393	19181393	+	Missense_Mutation	SNP	T	T	C	rs35874116	byCluster;by1000genomes	TCGA-AO-A03U-01	TCGA-AO-A03U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19181393	19181393	T	C	SNP	TAS1R2	NM_152232	human	genbank	57_37b	-1	validated	missense	c.571	p.I191V	0.002	HMMPfam_ANF_receptor,superfamily_SSF53822	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822,superfamily_SSF57586	-		
TG	7038	genome.wustl.edu	37	8	133899093	133899093	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AO-A03U-01	TCGA-AO-A03U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	133899093	133899093	A	G	SNP	TG	NM_003235	human	genbank	57_37b	+1	reviewed	silent	c.1476	p.R492	0.361	NULL	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_TNF receptor-like,HMMPfam_GCC2_GCC3,HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors	
