Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AARS	16	genome.wustl.edu	37	16	70292941	70292941	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	70292941	70292941	G	C	SNP	AARS	NM_001605	human	genbank	57_37b	-1	reviewed	missense	c.1934	p.S645C	1.000	superfamily_Thr/Ala-tRNA-synth_IIc_edit	superfamily_SSF55681,HMMPfam_tRNA-synt_2c,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA_SAD,HMMPfam_DHHA1	-	no_errors	
ABCA1	19	genome.wustl.edu	37	9	107556793	107556794	+	Splice_Site	INS	-	-	AAA	novel	unknown	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	107556793	107556794	-	AAA	INS	ABCA1	NM_005502	human	genbank	57_37b	-1	reviewed	splice_site_ins	c.5383-3_5383-2	e39-2	1.000:0.061	-	-	-	no_errors	
B3GNT3	10331	genome.wustl.edu	37	19	17922586	17922586	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17922586	17922586	G	A	SNP	B3GNT3	NM_014256	human	genbank	57_37b	+1	reviewed	silent	c.774	p.V258	0.730	HMMPfam_Galactosyl_T	PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_Galactosyl_T	-	no_errors	
BZRAP1	9256	genome.wustl.edu	37	17	56388238	56388238	+	Missense_Mutation	SNP	C	G	G	rs2680704	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56388238	56388238	C	G	SNP	BZRAP1	NM_004758	human	genbank	57_37b	-1	validated	missense	c.3418	p.A1140P	0.000	NULL	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	-		
C5orf41	153222	genome.wustl.edu	37	5	172537628	172537628	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	172537628	172537628	G	C	SNP	C5orf41	NM_153607	human	genbank	57_37b	+1	validated	missense	c.1521	p.K507N	1.000	NULL	PatternScan_BZIP_BASIC	-	no_errors	
C7orf20	51608	genome.wustl.edu	37	7	930689	930689	+	Silent	SNP	C	C	T	rs13171	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	930689	930689	C	T	SNP	C7orf20	NM_015949	human	genbank	57_37b	+1	validated	silent	c.591	p.A197	0.916	HMMPfam_DUF410	HMMPfam_DUF410	-		
CDH24	64403	genome.wustl.edu	37	14	23518908	23518908	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23518908	23518908	C	G	SNP	CDH24	NM_022478	human	genbank	57_37b	-1	validated	missense	c.1639	p.G547R	0.984	superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
CLCN7	1186	genome.wustl.edu	37	16	1504437	1504437	+	Silent	SNP	C	T	T	rs12935737	byCluster;byFrequency;by1000genomes	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1504437	1504437	C	T	SNP	CLCN7	NM_001287	human	genbank	57_37b	-1	reviewed	silent	c.1128	p.P376	0.934	superfamily_Cl-channel_core,HMMPfam_Voltage_CLC	superfamily_Cl-channel_core,HMMPfam_Voltage_CLC,HMMPfam_CBS,HMMSmart_CBS,superfamily_SSF54631	-		
ENSG00000247918	0	genome.wustl.edu	37	17	40126012	40126012	+	RNA	SNP	G	G	T	novel	unknown	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40126012	40126012	G	T	SNP	ENSG00000247918	ENST00000499234	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.076	-	-	-	no_errors	
GPR98	84059	genome.wustl.edu	37	5	89979505	89979505	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	89979505	89979505	G	C	SNP	GPR98	NM_032119	human	genbank	57_37b	+1	reviewed	missense	c.5767	p.E1923Q	1.000	HMMSmart_SM00237	HMMSmart_SM00237,HMMPfam_Calx-beta,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP,PatternScan_A_DEAMINASE,PatternScan_LIPOYL,HMMPfam_GPS	-	no_errors	
KCNJ12	3768	genome.wustl.edu	37	17	21318821	21318821	+	Missense_Mutation	SNP	A	A	C	rs1714865	byCluster;byFrequency	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	21318821	21318821	A	C	SNP	KCNJ12	NM_021012	human	genbank	57_37b	+1	validated	missense	c.167	p.E56A	1.000	superfamily_SSF81324,HMMPfam_IRK	HMMPfam_IRK_N,superfamily_SSF81324,HMMPfam_IRK,superfamily_Ig_E-set	-		
LOC100290409	0	genome.wustl.edu	37	17	4626086	4626086	+	Missense_Mutation	SNP	C	C	T	rs67966027	byCluster;byFrequency;by1000genomes	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4626086	4626086	C	T	SNP	LOC100290409	XM_002347704	human	genbank	57_37b	-1	model	missense	c.231	p.M77I	0.000	NULL	NULL	-		
MKRN3	7681	genome.wustl.edu	37	15	23811712	23811712	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	23811712	23811712	C	T	SNP	MKRN3	NM_005664	human	genbank	57_37b	+1	reviewed	silent	c.783	p.L261	0.999	HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH	HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors	
MUC2	4583	genome.wustl.edu	37	11	1101649	1101649	+	Silent	SNP	T	T	C	rs7480563	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1101649	1101649	T	C	SNP	MUC2	NM_002457	human	genbank	57_37b	+1	reviewed	silent	c.7650	p.P2550	0.007	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMSmart_SM00214,PatternScan_VWFC_1,PatternScan_EGF_1,HMMPfam_VWC,HMMPfam_Cys_knot,HMMSmart_SM00041,PatternScan_CTCK_1	-		
NOTCH4	4855	genome.wustl.edu	37	6	32191658	32191659	+	In_Frame_Ins	INS	-	-	AGC	novel	unknown	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32191658	32191659	-	AGC	INS	NOTCH4	NM_004557	human	genbank	57_37b	-1	reviewed	in_frame_ins	c.48_47	p.17in_frame_insL	0.002:0.003	NULL	HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain,HMMPfam_NODP,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	G	rs104886003	unknown	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	G	G						Unknown	Unknown	Phase_IV	Capture			1	Illumina GAIIx	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	
PLIN4	0	genome.wustl.edu	37	19	4510560	4510560	+	Missense_Mutation	SNP	C	C	T	rs7251858	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4510560	4510560	C	T	SNP	PLIN4	NM_001080400	human	genbank	57_37b	-1	provisional	missense	c.3370	p.A1124T	0.002	NULL	superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain	-		
PRG4	10216	genome.wustl.edu	37	1	186276520	186276520	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	186276520	186276520	A	C	SNP	PRG4	NM_005807	human	genbank	57_37b	+1	reviewed	missense	c.1669	p.T557P	0.000	NULL	HMMSmart_SM00201,HMMPfam_Somatomedin_B,superfamily_Somatomedin B domain,PatternScan_SMB_1,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120,PatternScan_HEMOPEXIN	-	no_errors	
SART1	9092	genome.wustl.edu	37	11	65733393	65733393	+	Silent	SNP	C	C	T	rs688862	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65733393	65733393	C	T	SNP	SART1	NM_005146	human	genbank	57_37b	+1	reviewed	silent	c.774	p.T258	0.194	HMMPfam_SART-1	HMMPfam_SART-1	-		
SCGB1C1	147199	genome.wustl.edu	37	11	193146	193146	+	Missense_Mutation	SNP	G	G	A	rs61736219	unknown	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	193146	193146	G	A	SNP	SCGB1C1	NM_145651	human	genbank	57_37b	+1	validated	missense	c.47	p.C16Y	0.223	HMMPfam_Uteroglobin	HMMPfam_Uteroglobin,superfamily_Secretoglobin	-		
TRBV30	0	genome.wustl.edu	37	7	142510446	142510446	+	Nonsense_Mutation	SNP	G	G	A	rs17267	byCluster;byFrequency;by1000genomes	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	142510446	142510446	G	A	SNP	TRBV30	ENST00000417977	human	ensembl	57_37b	-1	known	nonsense	c.160	p.R54*	0.998	HMMPfam_V-set,superfamily_SSF48726	HMMPfam_V-set,superfamily_SSF48726	-		
TSKU	25987	genome.wustl.edu	37	11	76506673	76506675	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	76506673	76506675	CTG	-	DEL	TSKU	NM_015516	human	genbank	57_37b	+1	validated	in_frame_del	c.13_15	p.L8in_frame_del	0.997:1.000:0.997	NULL	superfamily_SSF52047,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP	(deletion:cds_exon[76506661,76507722])	no_errors	
TTC16	158248	genome.wustl.edu	37	9	130489558	130489558	+	Silent	SNP	A	A	G	rs472144	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	130489558	130489558	A	G	SNP	TTC16	NM_144965	human	genbank	57_37b	+1	provisional	silent	c.1578	p.K526	0.002	NULL	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR	-		
ZFYVE28	57732	genome.wustl.edu	37	4	2306053	2306053	+	Missense_Mutation	SNP	A	A	G	rs661301	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	2306053	2306053	A	G	SNP	ZFYVE28	NM_020972	human	genbank	57_37b	-1	validated	missense	c.2014	p.S672P	0.000	NULL	HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	-		
ZNF280C	55609	genome.wustl.edu	37	X	129377634	129377634	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0JC-01	TCGA-AO-A0JC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	129377634	129377634	C	G	SNP	ZNF280C	NM_017666	human	genbank	57_37b	-1	validated	missense	c.284	p.R95T	0.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
