Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADD3	120	genome.wustl.edu	37	10	111892110	111892110	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	111892110	111892110	A	T	SNP	ADD3	NM_016824	human	genbank	57_37b	+1	reviewed	missense	c.1780	p.I594F	1.000	NULL	superfamily_AraD-like aldolase/epimerase,HMMPfam_Aldolase_II	-	no_errors	
ALPK1	80216	genome.wustl.edu	37	4	113351611	113351611	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	113351611	113351611	G	A	SNP	ALPK1	NM_001102406	human	genbank	57_37b	+1	validated	missense	c.908	p.R303H	0.996	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00811,HMMPfam_Alpha_kinase	-	no_errors	
C4orf40	401137	genome.wustl.edu	37	4	71024598	71024598	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	71024598	71024598	C	A	SNP	C4orf40	NM_214711	human	genbank	57_37b	+1	validated	missense	c.629	p.P210H	0.000	NULL	NULL	-	no_errors	
CDCA4	55038	genome.wustl.edu	37	14	105477579	105477579	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105477579	105477579	C	T	SNP	CDCA4	NM_017955	human	genbank	57_37b	-1	reviewed	missense	c.688	p.E230K	1.000	NULL	HMMPfam_SERTA	-	no_errors	
CELF5	0	genome.wustl.edu	37	19	3224896	3224896	+	Silent	SNP	G	G	C	rs17852497	byCluster;by1000genomes	TCGA-AO-A126-01	TCGA-AO-A126-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3224896	3224896	G	C	SNP	CELF5	NM_021938	human	genbank	57_37b	+1	reviewed	silent	c.159	p.P53	0.995	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-		
ENSG00000201595	0	genome.wustl.edu	37	3	51728573	51728573	+	RNA	SNP	G	A	A	rs13090011	byCluster;byFrequency;by1000genomes	TCGA-AO-A126-01	TCGA-AO-A126-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	51728573	51728573	G	A	SNP	ENSG00000201595	ENST00000364725	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000238261	0	genome.wustl.edu	37	1	143398428	143398428	+	Splice_Site	SNP	G	G	A	rs75042706	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	143398428	143398428	G	A	SNP	ENSG00000238261	ENST00000431700	human	ensembl	57_37b	+1	known	splice_site	c.NULL	NULL	0.001	-	-	-		
ENSG00000246310	0	genome.wustl.edu	37	14	35557135	35557135	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	35557135	35557135	G	A	SNP	ENSG00000246310	ENST00000499267	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
FER1L5	90342	genome.wustl.edu	37	2	97355022	97355022	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	97355022	97355022	G	A	SNP	FER1L5	NM_001113382	human	genbank	57_37b	+1	provisional	missense	c.2419	p.V807I	1.000	HMMSmart_SM00693	HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerI,HMMPfam_FerB,HMMSmart_SM00693,HMMSmart_SM00694	-	no_errors	
HELQ	113510	genome.wustl.edu	37	4	84368010	84368010	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	84368010	84368010	A	T	SNP	HELQ	NM_133636	human	genbank	57_37b	-1	validated	missense	c.1370	p.L457Q	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
ICOS	29851	genome.wustl.edu	37	2	204820385	204820385	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	204820385	204820385	G	A	SNP	ICOS	NM_012092	human	genbank	57_37b	+1	reviewed	missense	c.85	p.E29K	0.072	NULL	NULL	-	no_errors	
IPO11	51194	genome.wustl.edu	37	5	61781290	61781290	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	61781290	61781290	G	T	SNP	IPO11	NM_001134779	human	genbank	57_37b	+1	validated	splice_site	c.1338+1	e12+1	1.000	-	-	-	no_errors	
LOC100129958	0	genome.wustl.edu	37	6	162989826	162989826	+	Missense_Mutation	SNP	G	G	A	rs10945846	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A126-01	TCGA-AO-A126-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	162989826	162989826	G	A	SNP	LOC100129958	XM_001719102	human	genbank	57_37b	+1	model	missense	c.313	p.E105K	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-		
LOC100288108	0	genome.wustl.edu	37	8	140631062	140631062	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	140631062	140631062	G	A	SNP	LOC100288108	XM_002342878	human	genbank	57_37b	+1	model	missense	c.805	p.V269M	1.000	NULL	NULL	-	no_errors	
MAGEE1	57692	genome.wustl.edu	37	X	75649280	75649280	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	75649280	75649280	C	T	SNP	MAGEE1	NM_020932	human	genbank	57_37b	+1	validated	silent	c.957	p.S319	0.000	NULL	HMMPfam_MAGE	-	no_errors	
MYO7B	4648	genome.wustl.edu	37	2	128364879	128364879	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	128364879	128364879	C	A	SNP	MYO7B	NM_001080527	human	genbank	57_37b	+1	provisional	silent	c.2523	p.A841	0.566	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMSmart_SM00139,HMMPfam_MyTH4,HMMSmart_SM00295,superfamily_Second domain of FERM,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMPfam_FERM_M	-	no_errors	
OBFC1	79991	genome.wustl.edu	37	10	105657473	105657473	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	105657473	105657473	G	T	SNP	OBFC1	NM_024928	human	genbank	57_37b	-1	validated	missense	c.586	p.P196T	0.978	HMMPfam_DUF1879	superfamily_Nucleic_acid_OB,HMMPfam_tRNA_anti,HMMPfam_DUF1879	-	no_errors	
OR13G1	441933	genome.wustl.edu	37	1	247836219	247836219	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247836219	247836219	A	C	SNP	OR13G1	NM_001005487	human	genbank	57_37b	-1	provisional	missense	c.125	p.I42S	0.058	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
PDP2	57546	genome.wustl.edu	37	16	66918915	66918915	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	66918915	66918915	C	T	SNP	PDP2	NM_020786	human	genbank	57_37b	+1	validated	missense	c.728	p.S243L	1.000	superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332	superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,PatternScan_PP2C,HMMPfam_PP2C	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-		
PNCK	139728	genome.wustl.edu	37	X	152936838	152936838	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	152936838	152936838	C	T	SNP	PNCK	ENST00000370142	human	ensembl	57_37b	-1	known	silent	c.585	p.A195	0.017	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
PPIL2	23759	genome.wustl.edu	37	22	22049730	22049730	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	22049730	22049730	T	C	SNP	PPIL2	NM_148176	human	genbank	57_37b	+1	reviewed	missense	c.1510	p.C504R	0.000	NULL	superfamily_SSF57850,HMMSmart_Ubox,superfamily_CSA_PPIase,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1	-	no_errors	
PPM1F	9647	genome.wustl.edu	37	22	22300420	22300420	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	22300420	22300420	T	C	SNP	PPM1F	NM_014634	human	genbank	57_37b	-1	reviewed	missense	c.1	p.M1V	0.938	NULL	superfamily_PP2C-related,HMMSmart_PP2Cc,HMMPfam_PP2C,HMMSmart_PP2C_SIG,PatternScan_PP2C	-	no_errors	
RERE	473	genome.wustl.edu	37	1	8421526	8421526	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	8421526	8421526	A	G	SNP	RERE	NM_001042681	human	genbank	57_37b	-1	reviewed	missense	c.2041	p.S681P	0.998	HMMPfam_Atrophin-1	HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,HMMSmart_SM00401,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_GATA,HMMPfam_Atrophin-1	-	no_errors	
SHANK2	22941	genome.wustl.edu	37	11	70331577	70331577	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	70331577	70331577	G	A	SNP	SHANK2	NM_012309	human	genbank	57_37b	-1	reviewed	silent	c.3036	p.D1012	0.026	NULL	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors	
SLC13A5	284111	genome.wustl.edu	37	17	6606363	6606363	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	6606363	6606363	G	A	SNP	SLC13A5	NM_177550	human	genbank	57_37b	-1	validated	silent	c.642	p.Y214	0.112	HMMPfam_Na_sulph_symp	HMMPfam_Na_sulph_symp,PatternScan_NA_SULFATE	-	no_errors	
SPINK5	11005	genome.wustl.edu	37	5	147505286	147505286	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	147505286	147505286	G	T	SNP	SPINK5	NM_001127698	human	genbank	57_37b	+1	reviewed	missense	c.2830	p.D944Y	0.981	superfamily_Kazal-type serine protease inhibitors	superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2,HMMSmart_SM00280,PatternScan_KAZAL,HMMPfam_Kazal_1	-	no_errors	
ZNF71	58491	genome.wustl.edu	37	19	57133612	57133612	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A126-01	TCGA-AO-A126-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	57133612	57133612	C	A	SNP	ZNF71	NM_021216	human	genbank	57_37b	+1	validated	missense	c.957	p.N319K	0.039	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
